ISRosp5
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAYC01000001 | ND | Roseobacter sp. | Roseobacter sp. SK209-2-6 |
DNA section
IS Length : 1217 bp
Ends
IR Length : 19/25
IRL : TGATCCTCCCCCACTGAAGTGATCCGCCCGTATAGTTAGGAAACGGAGGA
IRR : TGATCAGCCCCATCGAAGTGGTCCAGTGTGAGTGTTAGTGCATGATCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCGAATAC | GTGGGAAAAC | 0 |
DNA sequence
TGATCCTCCCCCACTGAAGTGATCCGCCCGTATAGTTAGGAAACGGAGGATCAGATATGGGAATCAAGCGACACAAGCCCGAAGAGATTGTCACGAAGTT
ACGGCAGGTTGAGGTGCTTTGCGGCCAAGGGATGCCGCGCGTAGACGCCATTCGACAGGTGCAGATTACAGAACAAACCTTCTATCTCTGGCGCAAGCAA
TATGGCGGTATGGGAACCGACCAACTGAAGGAACTAAAGCGACTTCAGAAGGAGAATGACCGGCTGCGTCGGGCAGTTTCTGATCTGACATTGGACAAGC
TCATTCTGTCGGAAGCTGCACGGGGAAACTTCTGAGCCCCTCGCGCCGCCGTAACTGCATTGATCATGTGCGACGCCAGTTCCACGTCTCAGAGCGTCGC
GCCTGCCGTGTTCTGGGACAGCACCGTTCCACACAGAGGCGGGTGCCTGTTGGACGTGCTGACGAAGACCGGTTGGTGTCTGACATGATCGAACTGACAC
GCCAATATGGTCGATACGGTTACCGTCGGATAGCGGCTCTTCTGAGAGACGCCGGCTGGCAAATCAACGACAAACGTGTTGAGCGCCTATGGCGGCGTGA
GGGGCTGAAAGTTCCAATGAAACAACCGAAGAAAGGACGGCTCTGGCTGAACGACGGGTCGTGTGTTCGACTCCGGCCCGAATATCGTGACCATGTCTGG
TCCTATGACTTCGTGCACCATCGAACGGATGACGGGAAAGCGTTCCGGACACTGAACATTCTGGATGAACACAGCCGGGAATGCCTGGCGATCCGGGTGA
AGAGGCGCTTGAACTCGGCAGAAGTTATTGACGCGCTGACAGATCTTTTCATCCTGCGTGGCGTTCCTGCTTTCATCAGATCAGATAATGGCCCAGAGTT
CATTGCTCAGGCCGTTCGAGATTGGATCGCAGCGGTCGGTGCCCAAACGGCCTACATTGAACCAGGATCACCTTGGGAGAACGGATACTGTGAAAGCTTC
AACGCGCGCTTCAGAGACGAGCTGCTGAATGGAGAGGTATTTTACAGCCTGCGTGAAGCCCAGATCCTGATTGAACAATGGAGAAATCACTACAACACAA
AACGGCCGCATAGTGCTCTGGGCTATCGCCCACCGGCTCCGGAAGCCATCGTTCCGGTGGAAACCAGGCCGATCATGCACTAACACTCACACTGGACCAC
TTCGATGGGGCTGATCA
ACGGCAGGTTGAGGTGCTTTGCGGCCAAGGGATGCCGCGCGTAGACGCCATTCGACAGGTGCAGATTACAGAACAAACCTTCTATCTCTGGCGCAAGCAA
TATGGCGGTATGGGAACCGACCAACTGAAGGAACTAAAGCGACTTCAGAAGGAGAATGACCGGCTGCGTCGGGCAGTTTCTGATCTGACATTGGACAAGC
TCATTCTGTCGGAAGCTGCACGGGGAAACTTCTGAGCCCCTCGCGCCGCCGTAACTGCATTGATCATGTGCGACGCCAGTTCCACGTCTCAGAGCGTCGC
GCCTGCCGTGTTCTGGGACAGCACCGTTCCACACAGAGGCGGGTGCCTGTTGGACGTGCTGACGAAGACCGGTTGGTGTCTGACATGATCGAACTGACAC
GCCAATATGGTCGATACGGTTACCGTCGGATAGCGGCTCTTCTGAGAGACGCCGGCTGGCAAATCAACGACAAACGTGTTGAGCGCCTATGGCGGCGTGA
GGGGCTGAAAGTTCCAATGAAACAACCGAAGAAAGGACGGCTCTGGCTGAACGACGGGTCGTGTGTTCGACTCCGGCCCGAATATCGTGACCATGTCTGG
TCCTATGACTTCGTGCACCATCGAACGGATGACGGGAAAGCGTTCCGGACACTGAACATTCTGGATGAACACAGCCGGGAATGCCTGGCGATCCGGGTGA
AGAGGCGCTTGAACTCGGCAGAAGTTATTGACGCGCTGACAGATCTTTTCATCCTGCGTGGCGTTCCTGCTTTCATCAGATCAGATAATGGCCCAGAGTT
CATTGCTCAGGCCGTTCGAGATTGGATCGCAGCGGTCGGTGCCCAAACGGCCTACATTGAACCAGGATCACCTTGGGAGAACGGATACTGTGAAAGCTTC
AACGCGCGCTTCAGAGACGAGCTGCTGAATGGAGAGGTATTTTACAGCCTGCGTGAAGCCCAGATCCTGATTGAACAATGGAGAAATCACTACAACACAA
AACGGCCGCATAGTGCTCTGGGCTATCGCCCACCGGCTCCGGAAGCCATCGTTCCGGTGGAAACCAGGCCGATCATGCACTAACACTCACACTGGACCAC
TTCGATGGGGCTGATCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
279 bp | 92 aa | 57 | 335 | + | No |
Description : First part of the transposase
ORF sequence :
MGIKRHKPEEIVTKLRQVEVLCGQGMPRVDAIRQVQITEQTFYLWRKQYGGMGTDQLKELKRLQKENDRLRRAVSDLTLDKLILSEAARGNF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
900 bp | 299 aa | 284 | 1183 | + | No |
Description : Second part of the transposase
ORF sequence :
SDIGQAHSVGSCTGKLLSPSRRRNCIDHVRRQFHVSERRACRVLGQHRSTQRRVPVGRADEDRLVSDMIELTRQYGRYGYRRIAALLRDAGWQINDKRVE
RLWRREGLKVPMKQPKKGRLWLNDGSCVRLRPEYRDHVWSYDFVHHRTDDGKAFRTLNILDEHSRECLAIRVKRRLNSAEVIDALTDLFILRGVPAFIRS
DNGPEFIAQAVRDWIAAVGAQTAYIEPGSPWENGYCESFNARFRDELLNGEVFYSLREAQILIEQWRNHYNTKRPHSALGYRPPAPEAIVPVETRPIMH
RLWRREGLKVPMKQPKKGRLWLNDGSCVRLRPEYRDHVWSYDFVHHRTDDGKAFRTLNILDEHSRECLAIRVKRRLNSAEVIDALTDLFILRGVPAFIRS
DNGPEFIAQAVRDWIAAVGAQTAYIEPGSPWENGYCESFNARFRDELLNGEVFYSLREAQILIEQWRNHYNTKRPHSALGYRPPAPEAIVPVETRPIMH
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1127 bp | 375 aa | 57 | 1183 | + | Yes |
Chemistry : DDE
ORF sequence :
MGIKRHKPEEIVTKLRQVEVLCGQGMPRVDAIRQVQITEQTFYLWRKQYGGMGTDQLKELKRLQKENDRLRRAVSDLTLDKLILSEAARGKLLSPSRRRN
CIDHVRRQFHVSERRACRVLGQHRSTQRRVPVGRADEDRLVSDMIELTRQYGRYGYRRIAALLRDAGWQINDKRVERLWRREGLKVPMKQPKKGRLWLND
GSCVRLRPEYRDHVWSYDFVHHRTDDGKAFRTLNILDEHSRECLAIRVKRRLNSAEVIDALTDLFILRGVPAFIRSDNGPEFIAQAVRDWIAAVGAQTAY
IEPGSPWENGYCESFNARFRDELLNGEVFYSLREAQILIEQWRNHYNTKRPHSALGYRPPAPEAIVPVETRPIMH
CIDHVRRQFHVSERRACRVLGQHRSTQRRVPVGRADEDRLVSDMIELTRQYGRYGYRRIAALLRDAGWQINDKRVERLWRREGLKVPMKQPKKGRLWLND
GSCVRLRPEYRDHVWSYDFVHHRTDDGKAFRTLNILDEHSRECLAIRVKRRLNSAEVIDALTDLFILRGVPAFIRSDNGPEFIAQAVRDWIAAVGAQTAY
IEPGSPWENGYCESFNARFRDELLNGEVFYSLREAQILIEQWRNHYNTKRPHSALGYRPPAPEAIVPVETRPIMH
Blast result :
Comments
Genome in progress.
ISRosp5 is 82% aa similar to ISMex5.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISRosp5 is 82% aa similar to ISMex5.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.
2] ISfinder annotation (2009).
2] ISfinder annotation (2009).