ISStag2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAUW01000009 ND Stappia aggregata
Stappia aggregata IAM 12614
Labrenzia aggregata IAM 12614
DNA section
IS Length : 1035 bp

Ends


IR Length : 20/25

IRL : TGTGAGCTCTCAACAGGTTGTCCATTCGGACCTGACCGAGGAGACTGGAG
IRR : TGTGGAGCCTCAACAGGTTGTCCCTGGTCATGTCGAGTCGACTGATCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCATTAGCACTAGAGCGC0

DNA sequence

TGTGAGCTCTCAACAGGTTGTCCATTCGGACCTGACCGAGGAGACTGGAGTTACCACGCTTCAGCACTCACGGGAGGGTCCGAATGAACATCCACAAGAA
TGCCCGTCTGACGCCGCTGCGTCGAGAGGAGATGGCTCTGGCAGTGATCGAGGACGGTCTTTCCAAAGCCCGGGTGGCGCGGATCTACGGCGTGTCGGCC
AAGATCGTTTCCCGGTGGGTCGAACGCTACAAGGTGGAAGGTCCCGCTGGTATGGCCGACCGCTCCTCGCGGCCAGACCGGATGCCCGCAGCAACCGATC
CGCTCATCTGTGAACGCATCATCGCCCTGCGCCGCCAACGCTGGACAGGCAAGCACATCGCTCGAGAGGTCGGCGTGTCACCGGCCACCGTCAGCCGGGT
GCTGCGGCGGGCAGGCCTCTCGCGGCTGAAGGACCTCGACCCGGCCGAACCGGTGCGCCGTTATGAACGCCAGTATCCGGGCGAACTAATCCACATCGAC
ATCAAGAAACTCGGCCGGTTCGATCGCGTTGGCCACCGCATCACCGGCGATCGCACCGGCCAGTCCAACAGCCGCGGCGTGGGTTGGGAGTTCGTCCATG
TCTGCATCGACGATGCCTCGCGCATCGCCTTCAGCCAGATCTTGCCCGACGAGAAGAAAGAGAGCGCCATCGCTTTCCTGCGCGCCGCGCTCGCCTATTA
CGAGAGCCTGGGCGCCACCGTCACCTGCGTCATGACCGACAACGGCGCATGCTACAAATCGAAAGCCTTCGCAAAAGCCTGCCGCGATCTCGGCCTCAAG
CACATCCGCACCCGACCCTATACGCCCAGGACAAACGGCAAGGCCGAACGCTTCATACAGACGGCCCTGCGCGAATGGGGTTATGCCGTCTCCTATCCAA
CGTCAAACGACAGGGCAGAGCAGTTGCCCGTCTGGCTGCACCGCTACAATTGGCACCGACCGCACGGCAGTCTAAAATCGAAAACGCCGATCAGTCGACT
CGACATGACCAGGGACAACCTGTTGAGGCTCCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa841040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIHKNARLTPLRREEMALAVIEDGLSKARVARIYGVSAKIVSRWVERYKVEGPAGMADRSSRPDRMPAATDPLICERIIALRRQRWTGKHIAREVGVSP
ATVSRVLRRAGLSRLKDLDPAEPVRRYERQYPGELIHIDIKKLGRFDRVGHRITGDRTGQSNSRGVGWEFVHVCIDDASRIAFSQILPDEKKESAIAFLR
AALAYYESLGATVTCVMTDNGACYKSKAFAKACRDLGLKHIRTRPYTPRTNGKAERFIQTALREWGYAVSYPTSNDRAEQLPVWLHRYNWHRPHGSLKSK
TPISRLDMTRDNLLRLHN

 

Blast result :
Comments
ISStag2 is 82% aa similar to ISRel2.
References
1] King,G., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.

2] ISfinder annotation (2009).