ISStag2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUW01000009 | ND | Stappia aggregata | Stappia aggregata IAM 12614 Labrenzia aggregata IAM 12614 |
DNA section
IS Length : 1035 bp
Ends
IR Length : 20/25
IRL : TGTGAGCTCTCAACAGGTTGTCCATTCGGACCTGACCGAGGAGACTGGAG
IRR : TGTGGAGCCTCAACAGGTTGTCCCTGGTCATGTCGAGTCGACTGATCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGCATTAGC | ACTAGAGCGC | 0 |
DNA sequence
TGTGAGCTCTCAACAGGTTGTCCATTCGGACCTGACCGAGGAGACTGGAGTTACCACGCTTCAGCACTCACGGGAGGGTCCGAATGAACATCCACAAGAA
TGCCCGTCTGACGCCGCTGCGTCGAGAGGAGATGGCTCTGGCAGTGATCGAGGACGGTCTTTCCAAAGCCCGGGTGGCGCGGATCTACGGCGTGTCGGCC
AAGATCGTTTCCCGGTGGGTCGAACGCTACAAGGTGGAAGGTCCCGCTGGTATGGCCGACCGCTCCTCGCGGCCAGACCGGATGCCCGCAGCAACCGATC
CGCTCATCTGTGAACGCATCATCGCCCTGCGCCGCCAACGCTGGACAGGCAAGCACATCGCTCGAGAGGTCGGCGTGTCACCGGCCACCGTCAGCCGGGT
GCTGCGGCGGGCAGGCCTCTCGCGGCTGAAGGACCTCGACCCGGCCGAACCGGTGCGCCGTTATGAACGCCAGTATCCGGGCGAACTAATCCACATCGAC
ATCAAGAAACTCGGCCGGTTCGATCGCGTTGGCCACCGCATCACCGGCGATCGCACCGGCCAGTCCAACAGCCGCGGCGTGGGTTGGGAGTTCGTCCATG
TCTGCATCGACGATGCCTCGCGCATCGCCTTCAGCCAGATCTTGCCCGACGAGAAGAAAGAGAGCGCCATCGCTTTCCTGCGCGCCGCGCTCGCCTATTA
CGAGAGCCTGGGCGCCACCGTCACCTGCGTCATGACCGACAACGGCGCATGCTACAAATCGAAAGCCTTCGCAAAAGCCTGCCGCGATCTCGGCCTCAAG
CACATCCGCACCCGACCCTATACGCCCAGGACAAACGGCAAGGCCGAACGCTTCATACAGACGGCCCTGCGCGAATGGGGTTATGCCGTCTCCTATCCAA
CGTCAAACGACAGGGCAGAGCAGTTGCCCGTCTGGCTGCACCGCTACAATTGGCACCGACCGCACGGCAGTCTAAAATCGAAAACGCCGATCAGTCGACT
CGACATGACCAGGGACAACCTGTTGAGGCTCCACA
TGCCCGTCTGACGCCGCTGCGTCGAGAGGAGATGGCTCTGGCAGTGATCGAGGACGGTCTTTCCAAAGCCCGGGTGGCGCGGATCTACGGCGTGTCGGCC
AAGATCGTTTCCCGGTGGGTCGAACGCTACAAGGTGGAAGGTCCCGCTGGTATGGCCGACCGCTCCTCGCGGCCAGACCGGATGCCCGCAGCAACCGATC
CGCTCATCTGTGAACGCATCATCGCCCTGCGCCGCCAACGCTGGACAGGCAAGCACATCGCTCGAGAGGTCGGCGTGTCACCGGCCACCGTCAGCCGGGT
GCTGCGGCGGGCAGGCCTCTCGCGGCTGAAGGACCTCGACCCGGCCGAACCGGTGCGCCGTTATGAACGCCAGTATCCGGGCGAACTAATCCACATCGAC
ATCAAGAAACTCGGCCGGTTCGATCGCGTTGGCCACCGCATCACCGGCGATCGCACCGGCCAGTCCAACAGCCGCGGCGTGGGTTGGGAGTTCGTCCATG
TCTGCATCGACGATGCCTCGCGCATCGCCTTCAGCCAGATCTTGCCCGACGAGAAGAAAGAGAGCGCCATCGCTTTCCTGCGCGCCGCGCTCGCCTATTA
CGAGAGCCTGGGCGCCACCGTCACCTGCGTCATGACCGACAACGGCGCATGCTACAAATCGAAAGCCTTCGCAAAAGCCTGCCGCGATCTCGGCCTCAAG
CACATCCGCACCCGACCCTATACGCCCAGGACAAACGGCAAGGCCGAACGCTTCATACAGACGGCCCTGCGCGAATGGGGTTATGCCGTCTCCTATCCAA
CGTCAAACGACAGGGCAGAGCAGTTGCCCGTCTGGCTGCACCGCTACAATTGGCACCGACCGCACGGCAGTCTAAAATCGAAAACGCCGATCAGTCGACT
CGACATGACCAGGGACAACCTGTTGAGGCTCCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 84 | 1040 | + | No |
Chemistry : DDE
ORF sequence :
MNIHKNARLTPLRREEMALAVIEDGLSKARVARIYGVSAKIVSRWVERYKVEGPAGMADRSSRPDRMPAATDPLICERIIALRRQRWTGKHIAREVGVSP
ATVSRVLRRAGLSRLKDLDPAEPVRRYERQYPGELIHIDIKKLGRFDRVGHRITGDRTGQSNSRGVGWEFVHVCIDDASRIAFSQILPDEKKESAIAFLR
AALAYYESLGATVTCVMTDNGACYKSKAFAKACRDLGLKHIRTRPYTPRTNGKAERFIQTALREWGYAVSYPTSNDRAEQLPVWLHRYNWHRPHGSLKSK
TPISRLDMTRDNLLRLHN
ATVSRVLRRAGLSRLKDLDPAEPVRRYERQYPGELIHIDIKKLGRFDRVGHRITGDRTGQSNSRGVGWEFVHVCIDDASRIAFSQILPDEKKESAIAFLR
AALAYYESLGATVTCVMTDNGACYKSKAFAKACRDLGLKHIRTRPYTPRTNGKAERFIQTALREWGYAVSYPTSNDRAEQLPVWLHRYNWHRPHGSLKSK
TPISRLDMTRDNLLRLHN
Blast result :
Comments
ISStag2 is 82% aa similar to ISRel2.
References
1] King,G., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.
2] ISfinder annotation (2009).
2] ISfinder annotation (2009).