ISJs1
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAMN01000006 | ND | Janibacter sp. | Janibacter sp. HTCC2649 |
DNA section
IS Length : 1104 bp
Ends
IR Length : 23
IRL : TGTACTGACCCGACAGGTTGGTTGAGTGATTGCGATCCGCTGATCTGATC
IRR : TGTACTGACCCGACAGGTTGGTTAAGCGGGTGATGGGTGGCTTGTTCCCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGGACCGCG | TCTAGC | TCGCCTTTGC | 6 |
| AGAGTGCGCC | ACTAGA | CTCGGGACGG | 6 |
| GATTCAGAGG | GCTAGG | CGCGTCTGAC | 6 |
DNA sequence
TGTACTGACCCGACAGGTTGGTTGAGTGATTGCGATCCGCTGATCTGATCAGTGGCGCGGGAAGGGCCTCCCGCGGTGGAGTGGAACTGCCAAGTCACCA
CTGCCACACACAGGAGGCCCTCATGTCCCACGCTAACGCCGCTCTGACGGTTCGTCACCGGCTCAAGGTCGCTCAGCTCGTCGTCGATCAGCGAGTCCCG
ATCAGCGAGGTCGCGGCACGATTCCAATGTTCCTGGCCGACGGTGAAGCGATGGGCCGATCGGTACGCCGCTGGTGAACCGATGAGCGACCGCTCGAGCC
GTCCACACGCGATGCCCGCCAAGACGTCTCCCTCGACGACGAAGCGGATCGTGTCGTTGCGGCTGCGCAAACGGTTGGGCCCGGTCCAGCTCGCCGCACA
CGTGGGGGTTGCACCCTCCACAGTGCACCGGGTGCTCACCAGGTGCCACCTCAACCGGTTGGCGCACGTCGACCGTGCCACCGGGGAGCCGGTGCGCCGT
TACGAGCACGAGCGCCCCGGGGACATGCTGCACGTGGACGTCAAGAAGTTCGGAAACATCCCCGACGGTGGCGGGTGGCGCTTCGTGGGCCGAGCCCAAG
GCGGGAAGAACCGGGCAGGCACCCCGGGCAAACCGAGGAACAAGCATTACCAGCCGAAGATGGGCCACGCGTTCGTGCACACCGTCATCGATGACCACTC
TCGTGTGGCCTACGCCGAGGTCCACGACAACGAAACCGCCGTGACCGCCACTGGTGTCCTACGCCGCGCCGTCGCCTGGTTCGCTGTCCGTGGCATCACC
ACACGCAGAGTCCTGTCCGACAACGGATCCGCCTACATCTCGCACCTGTGGCGCGACGTGTGCGCCGAGCTCGGGATCAAGCACTCCCGCACCCGACCCC
GCCGTCCGCAGACCAACGGCAAGATCGAACGCTTCCACCGCACCATGGCCGACGGGTGGGGATACGCCCGCTGCTACACCTCAGAAACCGAACGACGCCA
AGCTCTGCCAGCATGGCTCCACGAGTACAACCACCACCGACCCCACACCGCCTGCGGGAACAAGCCACCCATCACCCGCTTAACCAACCTGTCGGGTCAG
TACA
CTGCCACACACAGGAGGCCCTCATGTCCCACGCTAACGCCGCTCTGACGGTTCGTCACCGGCTCAAGGTCGCTCAGCTCGTCGTCGATCAGCGAGTCCCG
ATCAGCGAGGTCGCGGCACGATTCCAATGTTCCTGGCCGACGGTGAAGCGATGGGCCGATCGGTACGCCGCTGGTGAACCGATGAGCGACCGCTCGAGCC
GTCCACACGCGATGCCCGCCAAGACGTCTCCCTCGACGACGAAGCGGATCGTGTCGTTGCGGCTGCGCAAACGGTTGGGCCCGGTCCAGCTCGCCGCACA
CGTGGGGGTTGCACCCTCCACAGTGCACCGGGTGCTCACCAGGTGCCACCTCAACCGGTTGGCGCACGTCGACCGTGCCACCGGGGAGCCGGTGCGCCGT
TACGAGCACGAGCGCCCCGGGGACATGCTGCACGTGGACGTCAAGAAGTTCGGAAACATCCCCGACGGTGGCGGGTGGCGCTTCGTGGGCCGAGCCCAAG
GCGGGAAGAACCGGGCAGGCACCCCGGGCAAACCGAGGAACAAGCATTACCAGCCGAAGATGGGCCACGCGTTCGTGCACACCGTCATCGATGACCACTC
TCGTGTGGCCTACGCCGAGGTCCACGACAACGAAACCGCCGTGACCGCCACTGGTGTCCTACGCCGCGCCGTCGCCTGGTTCGCTGTCCGTGGCATCACC
ACACGCAGAGTCCTGTCCGACAACGGATCCGCCTACATCTCGCACCTGTGGCGCGACGTGTGCGCCGAGCTCGGGATCAAGCACTCCCGCACCCGACCCC
GCCGTCCGCAGACCAACGGCAAGATCGAACGCTTCCACCGCACCATGGCCGACGGGTGGGGATACGCCCGCTGCTACACCTCAGAAACCGAACGACGCCA
AGCTCTGCCAGCATGGCTCCACGAGTACAACCACCACCGACCCCACACCGCCTGCGGGAACAAGCCACCCATCACCCGCTTAACCAACCTGTCGGGTCAG
TACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 987 bp | 328 aa | 123 | 1109 | + | No |
Chemistry : DDE
ORF sequence :
MSHANAALTVRHRLKVAQLVVDQRVPISEVAARFQCSWPTVKRWADRYAAGEPMSDRSSRPHAMPAKTSPSTTKRIVSLRLRKRLGPVQLAAHVGVAPST
VHRVLTRCHLNRLAHVDRATGEPVRRYEHERPGDMLHVDVKKFGNIPDGGGWRFVGRAQGGKNRAGTPGKPRNKHYQPKMGHAFVHTVIDDHSRVAYAEV
HDNETAVTATGVLRRAVAWFAVRGITTRRVLSDNGSAYISHLWRDVCAELGIKHSRTRPRRPQTNGKIERFHRTMADGWGYARCYTSETERRQALPAWLH
EYNHHRPHTACGNKPPITRLTNLSGQYI
VHRVLTRCHLNRLAHVDRATGEPVRRYEHERPGDMLHVDVKKFGNIPDGGGWRFVGRAQGGKNRAGTPGKPRNKHYQPKMGHAFVHTVIDDHSRVAYAEV
HDNETAVTATGVLRRAVAWFAVRGITTRRVLSDNGSAYISHLWRDVCAELGIKHSRTRPRRPQTNGKIERFHRTMADGWGYARCYTSETERRQALPAWLH
EYNHHRPHTACGNKPPITRLTNLSGQYI
Blast result :
Comments
ISJs1 is 80% aa similar to ISKrh1.
There are no STOP codon, the transposase use the first Stop codon after the end of the IRR.The transposase in the database is cut at the end of the IS.
There are no STOP codon, the transposase use the first Stop codon after the end of the IRR.The transposase in the database is cut at the end of the IS.
References
1]Giovannoni,S.J., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2005) Direct Submission Genbank.
2]ISfinder annotation (2009)
2]ISfinder annotation (2009)