ISfinder Mirror Site

ISStma10

Family IS630
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_010943	ND	Stenotrophomonas maltophilia	Stenotrophomonas maltophilia K279a

DNA section

IS Length : 1106 bp

Ends

IR Length : 15/19

IRL : CGGCATGATTTATTCATGAACTTTTGTAGATTGCTTGAGTCGAACGTTCA
IRR : CGGCGGGGATTATTCATGAGGCCGCATAGGCGACATGCTTGTCACCAAAG

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CTTATAAACT		GATCAATAGA	0

DNA sequence

CGGCATGATTTATTCATGAACTTTTGTAGATTGCTTGAGTCGAACGTTCATGGAAAAAGAAGATGCACGCAAGCAGTCGCGGGAAGTGCTGCATGAACGG
CGCAAGCAGGTCATCCGCTTGCATCGAAAAGGTGTTGGCGTGATGCAGATCGTTGAGCAAACCGGGCTCAGTTGGTCTGGGGTTAACACTGCACTGCGCC
TGTTCGAGCAAGGCGGTGCGGCCGCACTCAAGCCCCACGCCAGGGGAAAGAAACCAGGTAGTGGACGCAGCCTGAGCACTGAGCAAGAGCGCGTGATTCG
AATGACCATCATCGACAAACGCCCAGAGCAGATCAAGATGGAGTTCGCGCTTTGGAGTCGGCCCGCAGTGCGCGAACTCATTGAACGCGACCTGGGGAAC
AAGCTGTCTGTCCGGGCGGTGGGCGACTATCTGGCACGCTGGGGTTTTACACCGCAAAAGTCGATCAAGAAAGCCTACGAGCAGCGGCCCGAGGCCGTCC
AGGCCTGGCTCGAAGATGAATACCCCACCATTGAGGCCAGAGCCAAGCGTGAAGGCGCAGAAATTCATTGGGGTGACGAAACAGCGCTGGTCAACACGGA
TGTGCGTGGCAGAAGTTACGCACCTGCGGGCCAAACACCAGTGACGCGCGCAGTCGGCGGAACGCGGCAAAAGCTCTCCATGATTGCAACCGTCACCAAC
CAGGGCAAAACGCGCTGGATGATTATTGACGAGGCGTTCAATTCAGACAGGCTGATCGAGTTCATGCAGGCCTTGATCAAGGAGTCGCAGGGCAAGAAGA
TATTCCTGATTCTGGACAACCTGAGGGTGCACCACAGCAAGCCAGTCAAGGAGTGGGCGACACAGCACAAACAGGACATTGAATTGTTCTACCTGCCCAG
CTACAGCCCTGAGCTCAACCCAGAGGAGCGGCTGAACGCAGATTTGAAGCATGCGATTGGCAGCAAGGTTCCGGTGCGAACCAAGGCCAAGCTGCGCGCA
GCGGCGACTGAACACATGACGATGTTGGAGAACACACCAGAGCGGGTCAAGAAGTACTTTGGTGACAAGCATGTCGCCTATGCGGCCTCATGAATAATCC
CCGCCG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1044 bp	347 aa	50	1093	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEKEDARKQSREVLHERRKQVIRLHRKGVGVMQIVEQTGLSWSGVNTALRLFEQGGAAALKPHARGKKPGSGRSLSTEQERVIRMTIIDKRPEQIKMEFA
LWSRPAVRELIERDLGNKLSVRAVGDYLARWGFTPQKSIKKAYEQRPEAVQAWLEDEYPTIEARAKREGAEIHWGDETALVNTDVRGRSYAPAGQTPVTR
AVGGTRQKLSMIATVTNQGKTRWMIIDEAFNSDRLIEFMQALIKESQGKKIFLILDNLRVHHSKPVKEWATQHKQDIELFYLPSYSPELNPEERLNADLK
HAIGSKVPVRTKAKLRAAATEHMTMLENTPERVKKYFGDKHVAYAAS

Blast result :

Comments

ISStma10 is 82% aa similar to IS1471.

References

1] ISfinder annotation (2009)
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74