ISfinder Mirror Site

ISStma8

Family IS110
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_011071	ND	Stenotrophomonas maltophilia	Stenotrophomonas maltophilia R551-3

DNA section

IS Length : 1224 bp

Ends

Left end : TATCTGATCGGAATCTGGCAGCGTAGGTGCCGAGAGCCGGCGTGGGCCGCCGTACAAGCCTGGATCTCGACGATCGCCATGTAGCTTGGCGCCCACGCCG
Right end : GCGAGCCAGGGCGAAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTTTACCTGAAGGGCACGAGCCTCCCATCAACACAGTTGCTACA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TGGATGGCGCCTACGAGCCT		AGGACGTACTTGCGGCGTGT	0

DNA sequence

TATCTGATCGGAATCTGGCAGCGTAGGTGCCGAGAGCCGGCGTGGGCCGCCGTACAAGCCTGGATCTCGACGATCGCCATGTAGCTTGGCGCCCACGCCG
GAATCTCCCTTGATCCGCCCAAACAGTTGCTGGAGCTGACACTCGCAGTGATAAGACTGGGCAAGCGGGGGGAGCTCTCGACCCTTCCAGACTATACGGA
GTCGGATGATGAACGGGATCGGGATTGATGTCAGTAAGCGCCAGCTGGATATCGGTACGACGGACGGAGAAACCCTGCAGGTCAGCAACAACCGCTCCGG
GTTTTCTGAATTGGATGTTTGGCTGAAGAAGCGTCCGACCAGCCAGATCGTGCTTGAAGCCACAGGTGGCTATGAGCAGCCGGTGCTGGATTTACTGCAC
AAGGTCGGTCATCCGGTGGCCCGTGCCAATGCCTTGCGCGCCCGGAAACTGGCTCAGGGGTTGGGTCAGATTGCCAAAACCGACCGTTTGGATGCCTACG
CGTTGGCGCAGATGGCCGCCCTGGTGAAGCTACCTCCCTATCAGCCGCTGCAGCCTTGGCAGCAGAAGATGCGGGAGTTCGTTCGGGCACGTCGGCAGGC
GATGGACGCCTTGACCATCGCGCGGCAGCAGCAGGAAATGGTGCTTGATCGTGAACTGCGCCGACTACTGCAGGGCAACATCACCCGCCTACAAACGATG
GTTGAGCGTCTGGGCAAGCAGATCGCCGAGCAGGTTGGTCAGCAACCTCAACTGAAGACGCTGAAGTCAATGAAGGGCGTAGGGCCTGCGCTGCAGGCAG
TTCTAGCCAGCTATCTGCCAGAGCTTGGCAGGATCACTGGCAAGCGCATCGCCAGCCTGGTCGGGGTAGCTCCGATGTCCCACGACAGCGGCACGATGAG
AGGAAAACGAAGCATCCACGGTGGAAGAGCCGAAATCCGGCAAGTGCTCTACATGGCGGCAATGTCGGCCATGCGGCATGAACCTCGGTTACGCGACTTT
TACCAGTCGCTACGAGCCCGCGGCAAGGAAGGCAAGGTGGCCATCGTGGCAGTGATGCGGAAGATGCTGGTCATCCTCAACGCCCGTGTCCGCGACGCTG
AAAGCGGACTAGTCCCTGCCTGAGGCGAGCCAGGGCGAAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTTTACCTGAAGGGCACGAG
CCTCCCATCAACACAGTTGCTACA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
915 bp	304 aa	209	1123	+	No

ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNGIGIDVSKRQLDIGTTDGETLQVSNNRSGFSELDVWLKKRPTSQIVLEATGGYEQPVLDLLHKVGHPVARANALRARKLAQGLGQIAKTDRLDAYALA
QMAALVKLPPYQPLQPWQQKMREFVRARRQAMDALTIARQQQEMVLDRELRRLLQGNITRLQTMVERLGKQIAEQVGQQPQLKTLKSMKGVGPALQAVLA
SYLPELGRITGKRIASLVGVAPMSHDSGTMRGKRSIHGGRAEIRQVLYMAAMSAMRHEPRLRDFYQSLRARGKEGKVAIVAVMRKMLVILNARVRDAESG
LVPA

Blast result :

Comments

ISStma8 is 92% aa similar to ISStma7.

References

1] Isfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Taghavi,S., Monchy,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. (2008) Direct submission GenBank.