ISStma4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011071 | ND | Stenotrophomonas maltophilia | Stenotrophomonas maltophilia R551-3 |
DNA section
IS Length : 1249 bp
Ends
Left end : AGCCGAGCCTAGGCTCGGCTCTTGTGTCTTGGATCGTGCCCTGATCAGGCACAATCCCCCGGTGACCCGGGAGGCTCCGATGACGCTGCCTCGGCTCTTA
Right end : TGCGCAAGCTCATCCATCTGATTTGGGGCGTACTGAGAAGTGGCCGACCCTTTGAGCCTGACGTCGCCCTTGCCTAGGCGAGGGCGACACGGTATCTACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCGCATGGCGACGACAGGC | GTGAATGCGGCAACTCGTAG | 0 | |
CCCGGCGCTACCGAAAAGCG | GATGCGAGGGCGTCACGGCG | 0 | |
GCTCGGCTCACGGCAGAAGC | ACGGCACCGAACTCAGCGCG | 0 | |
GCTCGGCTCCGGGAACAAGC | TGCCTGCGCCTCACAACTGA | 0 | |
AAACCCGCGCTGCGCGCGAT | TGGACGCTGCAGACCGCCCC | 0 | |
CACCATGTCTGGCGAAAAGC | ACGGCCCGGCTCAGCGCATC | 0 | |
CGGATACCTGACCAAAGAGC | AGGAGCGCGGTCCCCGCCTT | 0 |
DNA sequence
AGCCGAGCCTAGGCTCGGCTCTTGTGTCTTGGATCGTGCCCTGATCAGGCACAATCCCCCGGTGACCCGGGAGGCTCCGATGACGCTGCCTCGGCTCTTA
AGCCTTCGAGCTTGCAAAGTAGATTCAGCGCGTCGGCGGCCTGACACCGCCATGGAACTTGAACGGTATCTTAGGCCCGCCATCGGGTGAGAGCCTGTAC
TCACAAGGGCAAGTCTGGCGGCTTCCGATCACGATCGTAAGTTCAAGCTGGAGCGAAATCATGCAATTTATCGGCATCGACGCAGCCAAGGCGACTTTTG
ACATCGCCCTGCCTCTATCTCACGGCAAGTATCGAACCAAGGCCAAACTCCCCAATACGCCAAAGGGTTTTGATGAGCTTCTGGCCTGGCGCGCCAAACA
TGCGCCGAACGCGGCGGTAGGTATGGAGGCTACAGGCATCTATCACGAGGCCTTGGCTCAAGCACTGGTGGAAGCGGGGGTAGTGGTTCATGTGGCCAAT
CCCGCCCGAGTAAAGGCGTTTGGGCAGGCGGAGGGGATGCGGACCAAGACTGACCGCAGCGACGCCAAGCTGATTGCCCGGTTTTTTGAGGCACAACGCT
CGGAAAAGCTGTATCCCTACGTTCCACCGACGCCCTCGGAGGTGAAGCTGCGCGCCTTGGTACGGCGTCGAGATGACCTCCAGGAAATGCTGCAGATGGA
GCACAACCGCCTGGACGTTGCCGATATCTCGGTCCAGCAAGGGATCAAGGATGTGATCCGGACGTTGGAAGAGCAGATCAAGCAGGTCCAGAAGGCGATT
GAGGACCATATCGATAACGATCCGGACCTGCGCCGGCGTCATCAACTGCTTACCAGCATCCCCGGTGTAGGCAACACCAGCAGTGCCCAGCTGTTGGCCA
TGCTGGGGGATCTAAGCAAATACAGCGACGTGCGCCAGGTGGTTGCCCACGCGGGCCTGAATCCGGCCCAGCGTCAATCAGGAAACTACGAAGGCAAATG
CCGGATATCACGCGTCGGCGACGCCAATTTCCGCAAAAAGCTGTACATGCCGGCGCTGACCGGGAAGACCCACAACCCCACACTGAAGTCCTTTGCAGAC
CGGCTCAGCGCGAAAGGCAAGCCCTTCAAGGTCGTCATGTGTGCAGTGATGCGCAAGCTCATCCATCTGATTTGGGGCGTACTGAGAAGTGGCCGACCCT
TTGAGCCTGACGTCGCCCTTGCCTAGGCGAGGGCGACACGGTATCTACA
AGCCTTCGAGCTTGCAAAGTAGATTCAGCGCGTCGGCGGCCTGACACCGCCATGGAACTTGAACGGTATCTTAGGCCCGCCATCGGGTGAGAGCCTGTAC
TCACAAGGGCAAGTCTGGCGGCTTCCGATCACGATCGTAAGTTCAAGCTGGAGCGAAATCATGCAATTTATCGGCATCGACGCAGCCAAGGCGACTTTTG
ACATCGCCCTGCCTCTATCTCACGGCAAGTATCGAACCAAGGCCAAACTCCCCAATACGCCAAAGGGTTTTGATGAGCTTCTGGCCTGGCGCGCCAAACA
TGCGCCGAACGCGGCGGTAGGTATGGAGGCTACAGGCATCTATCACGAGGCCTTGGCTCAAGCACTGGTGGAAGCGGGGGTAGTGGTTCATGTGGCCAAT
CCCGCCCGAGTAAAGGCGTTTGGGCAGGCGGAGGGGATGCGGACCAAGACTGACCGCAGCGACGCCAAGCTGATTGCCCGGTTTTTTGAGGCACAACGCT
CGGAAAAGCTGTATCCCTACGTTCCACCGACGCCCTCGGAGGTGAAGCTGCGCGCCTTGGTACGGCGTCGAGATGACCTCCAGGAAATGCTGCAGATGGA
GCACAACCGCCTGGACGTTGCCGATATCTCGGTCCAGCAAGGGATCAAGGATGTGATCCGGACGTTGGAAGAGCAGATCAAGCAGGTCCAGAAGGCGATT
GAGGACCATATCGATAACGATCCGGACCTGCGCCGGCGTCATCAACTGCTTACCAGCATCCCCGGTGTAGGCAACACCAGCAGTGCCCAGCTGTTGGCCA
TGCTGGGGGATCTAAGCAAATACAGCGACGTGCGCCAGGTGGTTGCCCACGCGGGCCTGAATCCGGCCCAGCGTCAATCAGGAAACTACGAAGGCAAATG
CCGGATATCACGCGTCGGCGACGCCAATTTCCGCAAAAAGCTGTACATGCCGGCGCTGACCGGGAAGACCCACAACCCCACACTGAAGTCCTTTGCAGAC
CGGCTCAGCGCGAAAGGCAAGCCCTTCAAGGTCGTCATGTGTGCAGTGATGCGCAAGCTCATCCATCTGATTTGGGGCGTACTGAGAAGTGGCCGACCCT
TTGAGCCTGACGTCGCCCTTGCCTAGGCGAGGGCGACACGGTATCTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 321 aa | 261 | 1226 | + | No |
Chemistry : DEDD
ORF sequence :
MQFIGIDAAKATFDIALPLSHGKYRTKAKLPNTPKGFDELLAWRAKHAPNAAVGMEATGIYHEALAQALVEAGVVVHVANPARVKAFGQAEGMRTKTDRS
DAKLIARFFEAQRSEKLYPYVPPTPSEVKLRALVRRRDDLQEMLQMEHNRLDVADISVQQGIKDVIRTLEEQIKQVQKAIEDHIDNDPDLRRRHQLLTSI
PGVGNTSSAQLLAMLGDLSKYSDVRQVVAHAGLNPAQRQSGNYEGKCRISRVGDANFRKKLYMPALTGKTHNPTLKSFADRLSAKGKPFKVVMCAVMRKL
IHLIWGVLRSGRPFEPDVALA
DAKLIARFFEAQRSEKLYPYVPPTPSEVKLRALVRRRDDLQEMLQMEHNRLDVADISVQQGIKDVIRTLEEQIKQVQKAIEDHIDNDPDLRRRHQLLTSI
PGVGNTSSAQLLAMLGDLSKYSDVRQVVAHAGLNPAQRQSGNYEGKCRISRVGDANFRKKLYMPALTGKTHNPTLKSFADRLSAKGKPFKVVMCAVMRKL
IHLIWGVLRSGRPFEPDVALA
Blast result :
Comments
ISStma4 is 61% aa similar to IS621. There are 7 copies in the genome.
References
1] Miriam Land (2009) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Taghavi,S., Monchy,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Taghavi,S., Monchy,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. (2008) Direct submission GenBank.