ISStma3
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011071 | ND | Stenotrophomonas maltophilia | Stenotrophomonas maltophilia R551-3 |
DNA section
IS Length : 1023 bp
Ends
IR Length : 19/28
IRL : TGTGATCTCTCTGTAGGTTGTTCATCCGGGACATCTTTGGAAAATGGTGG
IRR : TGTGTAAACCCACTACGTTGTTCAGCCGTACTCTTGAGATAGGTGGCTGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGATAGTCG | ACTAAC | AGTCGACTCT | 6 |
| GCGTTAGTCG | ACTAAC | AGTCGACTCT | 6 |
| AGAGTCGACT | GTTAGT | TGTGATCTCT | 6 |
| GGTTTACACA | GTTAGT | CGACTGCTCT | 6 |
| AGAGCCGACT | GTTAGT | CGGCTGCTCT | 6 |
DNA sequence
TGTGATCTCTCTGTAGGTTGTTCATCCGGGACATCTTTGGAAAATGGTGGTTACCACACCGTTCCAGTCCCCAAAGAGCCCGGATGAACAATCATAAAAA
TGCCCGTTTGACGCCGTTTAGTCGAGCGCTTCTGGTCCGCCGCATCCTCCACGAGGGCCTACGCCCGGAAGAAGCAGCTCAAGCGTGTGGCGTAAGTGTG
CGTACGGCCTACAAGTGGCTGGCCCGATTCCGCCAGTTCGGGGCACCGGGCCTGGAAAACCGCAGCTCACGGCCTCACCAGACGCCGCATGCCACACCTG
CTCCGGTAGTCGAGCAAATCAAGGAGCACCGCCGTAAGCGGCAGACCTACCTGACCATCTCCAAGGCGCTGGGGGTCGGCCACAGTACGATTTCAAGGCT
GATGCGCGCCCACGGCCTCAATCGGTTGTGTCGGCTTGATCCGCCCAAGGAGGTCATCCGATACGAATACGATCAGCCCGGAGGGCTGCTGCATCTGGAC
ATCAAGAAGCTGGGCAACTTCCAGCGGCCAGGGCACAGAACCGATGCCAAGCGCAGGGGAAACGCCGCCGGCGGTGGCTGGGGCTACGTCCACGTGGCCA
TCGACGATCACTCCCGGGTCGCCTTCAGCAGCGTCCACCCCAACGAACAGGGCGAAACCGCCTGTCAGGCGTTGCTGGGCGCTCTGGAGTACTACGCCAG
CCTGGGAATCACCTTCAAGCGGATCCTGACCGACAACGGTGCCTGCTATCGCTCTACCGCCTTTGCCAAGCTGCTCAAATCCCTTGGGATCAAGCACATC
AGAACCAAGCCCTACACGCCGCGGACCAATGGCAAAGCCGAGCGCTTCATCCAGACCAGCCTGCGCGAGTGGGCTTACGCCTGCGAGTACGCATCCTCGG
ACCAGCGCAATTCCGTGTTGAACCAATGGCTGCACCACTACAACTGGCACCGTCCCCATATGGCGATCGGCGGCCAGCCACCTATCTCAAGAGTACGGCT
GAACAACGTAGTGGGTTTACACA
TGCCCGTTTGACGCCGTTTAGTCGAGCGCTTCTGGTCCGCCGCATCCTCCACGAGGGCCTACGCCCGGAAGAAGCAGCTCAAGCGTGTGGCGTAAGTGTG
CGTACGGCCTACAAGTGGCTGGCCCGATTCCGCCAGTTCGGGGCACCGGGCCTGGAAAACCGCAGCTCACGGCCTCACCAGACGCCGCATGCCACACCTG
CTCCGGTAGTCGAGCAAATCAAGGAGCACCGCCGTAAGCGGCAGACCTACCTGACCATCTCCAAGGCGCTGGGGGTCGGCCACAGTACGATTTCAAGGCT
GATGCGCGCCCACGGCCTCAATCGGTTGTGTCGGCTTGATCCGCCCAAGGAGGTCATCCGATACGAATACGATCAGCCCGGAGGGCTGCTGCATCTGGAC
ATCAAGAAGCTGGGCAACTTCCAGCGGCCAGGGCACAGAACCGATGCCAAGCGCAGGGGAAACGCCGCCGGCGGTGGCTGGGGCTACGTCCACGTGGCCA
TCGACGATCACTCCCGGGTCGCCTTCAGCAGCGTCCACCCCAACGAACAGGGCGAAACCGCCTGTCAGGCGTTGCTGGGCGCTCTGGAGTACTACGCCAG
CCTGGGAATCACCTTCAAGCGGATCCTGACCGACAACGGTGCCTGCTATCGCTCTACCGCCTTTGCCAAGCTGCTCAAATCCCTTGGGATCAAGCACATC
AGAACCAAGCCCTACACGCCGCGGACCAATGGCAAAGCCGAGCGCTTCATCCAGACCAGCCTGCGCGAGTGGGCTTACGCCTGCGAGTACGCATCCTCGG
ACCAGCGCAATTCCGTGTTGAACCAATGGCTGCACCACTACAACTGGCACCGTCCCCATATGGCGATCGGCGGCCAGCCACCTATCTCAAGAGTACGGCT
GAACAACGTAGTGGGTTTACACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 940 bp | 314 aa | 84 | 1023 | + | No |
Chemistry : DDE
ORF sequence :
MNNHKNARLTPFSRALLVRRILHEGLRPEEAAQACGVSVRTAYKWLARFRQFGAPGLENRSSRPHQTPHATPAPVVEQIKEHRRKRQTYLTISKALGVGH
STISRLMRAHGLNRLCRLDPPKEVIRYEYDQPGGLLHLDIKKLGNFQRPGHRTDAKRRGNAAGGGWGYVHVAIDDHSRVAFSSVHPNEQGETACQALLGA
LEYYASLGITFKRILTDNGACYRSTAFAKLLKSLGIKHIRTKPYTPRTNGKAERFIQTSLREWAYACEYASSDQRNSVLNQWLHHYNWHRPHMAIGGQPP
ISRVRLNNVVGLHS
STISRLMRAHGLNRLCRLDPPKEVIRYEYDQPGGLLHLDIKKLGNFQRPGHRTDAKRRGNAAGGGWGYVHVAIDDHSRVAFSSVHPNEQGETACQALLGA
LEYYASLGITFKRILTDNGACYRSTAFAKLLKSLGIKHIRTKPYTPRTNGKAERFIQTSLREWAYACEYASSDQRNSVLNQWLHHYNWHRPHMAIGGQPP
ISRVRLNNVVGLHS
Blast result :
Comments
ISStma3 is 66% aa similar to IS481. There is no STOP codon in the sequence, it is given by the insertion site.
There are 5 copies in Stenotrophomonas maltophilia R551-3.
There are 5 copies in Stenotrophomonas maltophilia R551-3.
References
1] Miriam Land (2009) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Taghavi,S., Monchy,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Taghavi,S., Monchy,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. (2008) Direct submission GenBank.