ISCth13
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009012 | ND | Clostridium thermocellum | Clostridium thermocellum ATCC 27405 |
DNA section
IS Length : 1874 bp
Ends
IR Length : 21/23
IRL : GGTTCTTTCCAAAGTTAGTTGAAATAAACAAAAAAACATGATAAAATAAA
IRR : AGTTCTTTCCAATGTTAGTTGAATAACCTCATTTTTTCGAGCCGAGAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAAAGAACCA | AATT | TTAGAGTAGCATTA | 4 |
GTAAATGTCAATAAAAATTT | GTGAAAATGCTCAACCCAT | 0 |
DNA sequence
GGTTCTTTCCAAAGTTAGTTGAAATAAACAAAAAAACATGATAAAATAAATAAAAATCAAACAAAAGAAAAGAGATTATACCATGGATAAGTTTATTAAA
CAATTAGATCCAAACTTAGACTATATTAATCATGAAATAAATGATGGCAAATGCTATATAACAGTAGCTTCCAACCGCAAAGAAGTAACATGTCCATTTT
GCGGCCAGTCATCATCCAGAATACATTCCACCTACAACAGAATTTTTCAGGACCTTCCAATACAAGGTAATAAGGTATTTATTATTATACGTAACAGAAA
AATGTTTTGTGATAATCCTGATTGTAGTCATACTACTTTTGCAGAAAGATTTGATTTTATCTCCTATAAAGCGAAGAAAACCCGTCGTCTTGAGGATGAA
ATTGTACGACTGTCAATAAATTGCAGTTCCGTTGCAGCATCAAAAGCTCTAAAGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAA
AAAAAAGAAACACCGGTTGTTGACAAAAAGACAGTAACAGCTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGAACAATTATGATAG
ATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCTAAATCTTCGTGTGATATCAAG
AGATGGATCTGTTATCTATAATAATGCAATTGCAAATGCACACCCGGAAGCTTTACAAATAAGTGACCGTTTTCATTTACTGAAGAATCTGACTTCCTAT
ATAACAGAGTATCTAAAAAAGAGATTAAAGCCGCAAGTTTTAATACAAGCTGTCAGTCAGGAAACTAAAGAGATAAAAACAATAAGACAGGCAGATGAAA
ACAGAAAACTTACATTGAAAGAAAAATATGAAAAGATAAAACAACTCCTATTAGAAGGAAGATGTAAAACAGAAATTTGCCGAAGCTTAAATATGGATAT
ACGAGCTTATGATAAGCTAATGGCAATGACGGCTGAAAAAAGGGAAAAGTCATTCCAGACAAAAAAGATGATCATACATGAAGAAAGAGTAAAGCAAAAA
ATGGAACGTGTAAATGAGGTGCGGGAGTTAAAGGGAATAGGTTTGAGTAATAGAGAGATATCCAGGCGTACCGGGCTTAATAGAAAAACAGTTAGCAGAT
ATCTTGATGAAAACTTTAATCCGGTCCATGCTACCTATGGCAAAAAGAGAAATGGGAAGCTGACACCATATATAAAAGCGATTGACGAATACCTTGAGAA
AGGGATTATGGGTTCATATATTGAGGAGAAGATACGCGAAATGGGATATGAGGGTTCATCATCAACTGTGCGGGATTATATAACAGACTGGAAGAAGCGG
AGAAAAAATATTACGATAAAAGTAGGAAAGATGGGACAAAAACAGAAACAATAAAAAGAGAAAATATATTAAAGCTATTGTACCAACCAATAGAAAAAGT
AAAAATAATTAGTAAGAAACAATTTGAAATGATATGCAAAGAATATCCGTTTTTTGAAAAGATATATAAAATAACATGGGAATTTAAGAGTATGCTAACT
GATAAAAATATTGATGCTTTGGATAAATGGATGGAGGGAGCCAAAAATCTAAACATACCGGAGATAAACAGTTTTATAAATGTGATTGAACGAGATATGG
AGGCTGTAAGGAATGCGATAAAATATGAATATAGTAATGGGCTTGTAGAAGGGTACATTAATAAACTGAAGGTAATAAAACGAATTATGTATGGCCGTTG
TAGTTTTGAAACACTAAAAACCAAAATTCTCGGCTCGAAAAAATGAGGTTATTCAACTAACATTGGAAAGAACT
CAATTAGATCCAAACTTAGACTATATTAATCATGAAATAAATGATGGCAAATGCTATATAACAGTAGCTTCCAACCGCAAAGAAGTAACATGTCCATTTT
GCGGCCAGTCATCATCCAGAATACATTCCACCTACAACAGAATTTTTCAGGACCTTCCAATACAAGGTAATAAGGTATTTATTATTATACGTAACAGAAA
AATGTTTTGTGATAATCCTGATTGTAGTCATACTACTTTTGCAGAAAGATTTGATTTTATCTCCTATAAAGCGAAGAAAACCCGTCGTCTTGAGGATGAA
ATTGTACGACTGTCAATAAATTGCAGTTCCGTTGCAGCATCAAAAGCTCTAAAGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAA
AAAAAAGAAACACCGGTTGTTGACAAAAAGACAGTAACAGCTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGAACAATTATGATAG
ATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCTAAATCTTCGTGTGATATCAAG
AGATGGATCTGTTATCTATAATAATGCAATTGCAAATGCACACCCGGAAGCTTTACAAATAAGTGACCGTTTTCATTTACTGAAGAATCTGACTTCCTAT
ATAACAGAGTATCTAAAAAAGAGATTAAAGCCGCAAGTTTTAATACAAGCTGTCAGTCAGGAAACTAAAGAGATAAAAACAATAAGACAGGCAGATGAAA
ACAGAAAACTTACATTGAAAGAAAAATATGAAAAGATAAAACAACTCCTATTAGAAGGAAGATGTAAAACAGAAATTTGCCGAAGCTTAAATATGGATAT
ACGAGCTTATGATAAGCTAATGGCAATGACGGCTGAAAAAAGGGAAAAGTCATTCCAGACAAAAAAGATGATCATACATGAAGAAAGAGTAAAGCAAAAA
ATGGAACGTGTAAATGAGGTGCGGGAGTTAAAGGGAATAGGTTTGAGTAATAGAGAGATATCCAGGCGTACCGGGCTTAATAGAAAAACAGTTAGCAGAT
ATCTTGATGAAAACTTTAATCCGGTCCATGCTACCTATGGCAAAAAGAGAAATGGGAAGCTGACACCATATATAAAAGCGATTGACGAATACCTTGAGAA
AGGGATTATGGGTTCATATATTGAGGAGAAGATACGCGAAATGGGATATGAGGGTTCATCATCAACTGTGCGGGATTATATAACAGACTGGAAGAAGCGG
AGAAAAAATATTACGATAAAAGTAGGAAAGATGGGACAAAAACAGAAACAATAAAAAGAGAAAATATATTAAAGCTATTGTACCAACCAATAGAAAAAGT
AAAAATAATTAGTAAGAAACAATTTGAAATGATATGCAAAGAATATCCGTTTTTTGAAAAGATATATAAAATAACATGGGAATTTAAGAGTATGCTAACT
GATAAAAATATTGATGCTTTGGATAAATGGATGGAGGGAGCCAAAAATCTAAACATACCGGAGATAAACAGTTTTATAAATGTGATTGAACGAGATATGG
AGGCTGTAAGGAATGCGATAAAATATGAATATAGTAATGGGCTTGTAGAAGGGTACATTAATAAACTGAAGGTAATAAAACGAATTATGTATGGCCGTTG
TAGTTTTGAAACACTAAAAACCAAAATTCTCGGCTCGAAAAAATGAGGTTATTCAACTAACATTGGAAAGAACT
Protein section
ORF number : 0
Comments
ISCth13 is probably inactive, the transposase is degenerated, there are frameshifts.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.