ISCth13

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009012 ND Clostridium thermocellum
Clostridium thermocellum ATCC 27405
DNA section
IS Length : 1874 bp

Ends


IR Length : 21/23

IRL : GGTTCTTTCCAAAGTTAGTTGAAATAAACAAAAAAACATGATAAAATAAA
IRR : AGTTCTTTCCAATGTTAGTTGAATAACCTCATTTTTTCGAGCCGAGAATT

Insertion site


Left flankDirect repeatRight flankDR Length
GGAAAGAACCAAATTTTAGAGTAGCATTA4
GTAAATGTCAATAAAAATTTGTGAAAATGCTCAACCCAT0

DNA sequence

GGTTCTTTCCAAAGTTAGTTGAAATAAACAAAAAAACATGATAAAATAAATAAAAATCAAACAAAAGAAAAGAGATTATACCATGGATAAGTTTATTAAA
CAATTAGATCCAAACTTAGACTATATTAATCATGAAATAAATGATGGCAAATGCTATATAACAGTAGCTTCCAACCGCAAAGAAGTAACATGTCCATTTT
GCGGCCAGTCATCATCCAGAATACATTCCACCTACAACAGAATTTTTCAGGACCTTCCAATACAAGGTAATAAGGTATTTATTATTATACGTAACAGAAA
AATGTTTTGTGATAATCCTGATTGTAGTCATACTACTTTTGCAGAAAGATTTGATTTTATCTCCTATAAAGCGAAGAAAACCCGTCGTCTTGAGGATGAA
ATTGTACGACTGTCAATAAATTGCAGTTCCGTTGCAGCATCAAAAGCTCTAAAGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAA
AAAAAAGAAACACCGGTTGTTGACAAAAAGACAGTAACAGCTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGAACAATTATGATAG
ATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCTAAATCTTCGTGTGATATCAAG
AGATGGATCTGTTATCTATAATAATGCAATTGCAAATGCACACCCGGAAGCTTTACAAATAAGTGACCGTTTTCATTTACTGAAGAATCTGACTTCCTAT
ATAACAGAGTATCTAAAAAAGAGATTAAAGCCGCAAGTTTTAATACAAGCTGTCAGTCAGGAAACTAAAGAGATAAAAACAATAAGACAGGCAGATGAAA
ACAGAAAACTTACATTGAAAGAAAAATATGAAAAGATAAAACAACTCCTATTAGAAGGAAGATGTAAAACAGAAATTTGCCGAAGCTTAAATATGGATAT
ACGAGCTTATGATAAGCTAATGGCAATGACGGCTGAAAAAAGGGAAAAGTCATTCCAGACAAAAAAGATGATCATACATGAAGAAAGAGTAAAGCAAAAA
ATGGAACGTGTAAATGAGGTGCGGGAGTTAAAGGGAATAGGTTTGAGTAATAGAGAGATATCCAGGCGTACCGGGCTTAATAGAAAAACAGTTAGCAGAT
ATCTTGATGAAAACTTTAATCCGGTCCATGCTACCTATGGCAAAAAGAGAAATGGGAAGCTGACACCATATATAAAAGCGATTGACGAATACCTTGAGAA
AGGGATTATGGGTTCATATATTGAGGAGAAGATACGCGAAATGGGATATGAGGGTTCATCATCAACTGTGCGGGATTATATAACAGACTGGAAGAAGCGG
AGAAAAAATATTACGATAAAAGTAGGAAAGATGGGACAAAAACAGAAACAATAAAAAGAGAAAATATATTAAAGCTATTGTACCAACCAATAGAAAAAGT
AAAAATAATTAGTAAGAAACAATTTGAAATGATATGCAAAGAATATCCGTTTTTTGAAAAGATATATAAAATAACATGGGAATTTAAGAGTATGCTAACT
GATAAAAATATTGATGCTTTGGATAAATGGATGGAGGGAGCCAAAAATCTAAACATACCGGAGATAAACAGTTTTATAAATGTGATTGAACGAGATATGG
AGGCTGTAAGGAATGCGATAAAATATGAATATAGTAATGGGCTTGTAGAAGGGTACATTAATAAACTGAAGGTAATAAAACGAATTATGTATGGCCGTTG
TAGTTTTGAAACACTAAAAACCAAAATTCTCGGCTCGAAAAAATGAGGTTATTCAACTAACATTGGAAAGAACT
Protein section
ORF number : 0

 

Comments
ISCth13 is probably inactive, the transposase is degenerated, there are frameshifts.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.