ISCth10

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009012 ND Clostridium thermocellum
Clostridium thermocellum ATCC 27405
DNA section
IS Length : 732 bp

Ends


Left end : TGTTTAAAGAAAACCACTGGCTATGCCAGTGGTTCTAAAGAGACAGTGTCTATGAGTAGAAAAAAGTAACCTCCTTTGTTACAATAATGTAGGTTCGCCA II struct. : Yes
Right end : AATATGCGGTTGGCGAACCATTCAACGCGTCTTAAGACTCTGCAAGGACCATGCCCTTATAGGGCTAGAGCAAACCACCGGATGAGCCGGTGGTTATGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAAAGTTTCCTGGCATTATTATAAAGCAACCACGGAtgat
TTACCGGGAAGGAGTTTATTATTTATCTTTAGTTATtgat

DNA sequence

TGTTTAAAGAAAACCACTGGCTATGCCAGTGGTTCTAAAGAGACAGTGTCTATGAGTAGAAAAAAGTAACCTCCTTTGTTACAATAATGTAGGTTCGCCA
ACTACATTAAAAACAAAGGAGGTATCACGATGCGTGATAATGCTAGTTTAGCACATACGCAATGGAATTGTAAATACCATATAGTATTTGTACCAAAATA
TAGGAGACAAGTAATATACGGTAAAATAAAGAAAGACATAGGGCAAATATTAAGAAAGCTATGCGAAATGAAAGGAGTAGAAATAATAGAAGCAAGCCTT
TGTCCCGATCATATACATATGTTAGTTAGTATACCACCAAAAATAAGTGTATCAAGTTTTATGGGATATTTGAAAGGAAAAAGCTCGTTAATGATTTTTG
ATAGGCATGCAAATTTAAAGTATAAATATGGGAACAGACATTTTTGGTGCAGGGGATACTATGTAGACACAGTAGGAAGGAACAGAAAAGCAATTGAGCA
ATATATAAGGAGACAATTACAAGAAGATATAGCAAGCGACCAGATAAGTTTAAATGAGTATATAGACCCGTTTACGGGTGAGCGAGTAAATAAAAGCAAA
AAATAAAACCACTTTAGTGGTGGCTTGAGAAGAATATGCGGTTGGCGAACCATTCAACGCGTCTTAAGACTCTGCAAGGACCATGCCCTTATAGGGCTAG
AGCAAACCACCGGATGAGCCGGTGGTTATGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
477 bp158 aa130606+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MRDNASLAHTQWNCKYHIVFVPKYRRQVIYGKIKKDIGQILRKLCEMKGVEIIEASLCPDHIHMLVSIPPKISVSSFMGYLKGKSSLMIFDRHANLKYKY
GNRHFWCRGYYVDTVGRNRKAIEQYIRRQLQEDIASDQISLNEYIDPFTGERVNKSKK

 

Blast result :
Comments
ISCth10 is 88% aa simialr to ISSep3. There are 2 copies in the genome.
References
1] Miriam Land (2009) Direct submission
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.