ISCth10
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009012 | ND | Clostridium thermocellum | Clostridium thermocellum ATCC 27405 |
DNA section
IS Length : 732 bp
Ends
Left end : TGTTTAAAGAAAACCACTGGCTATGCCAGTGGTTCTAAAGAGACAGTGTCTATGAGTAGAAAAAAGTAACCTCCTTTGTTACAATAATGTAGGTTCGCCA II struct. : Yes
Right end : AATATGCGGTTGGCGAACCATTCAACGCGTCTTAAGACTCTGCAAGGACCATGCCCTTATAGGGCTAGAGCAAACCACCGGATGAGCCGGTGGTTATGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAAAGTTTCCTGGCA | TTAT | TATAAAGCAACCACGGA | tgat |
TTACCGGGAAGGAGT | TTAT | TATTTATCTTTAGTTAT | tgat |
DNA sequence
TGTTTAAAGAAAACCACTGGCTATGCCAGTGGTTCTAAAGAGACAGTGTCTATGAGTAGAAAAAAGTAACCTCCTTTGTTACAATAATGTAGGTTCGCCA
ACTACATTAAAAACAAAGGAGGTATCACGATGCGTGATAATGCTAGTTTAGCACATACGCAATGGAATTGTAAATACCATATAGTATTTGTACCAAAATA
TAGGAGACAAGTAATATACGGTAAAATAAAGAAAGACATAGGGCAAATATTAAGAAAGCTATGCGAAATGAAAGGAGTAGAAATAATAGAAGCAAGCCTT
TGTCCCGATCATATACATATGTTAGTTAGTATACCACCAAAAATAAGTGTATCAAGTTTTATGGGATATTTGAAAGGAAAAAGCTCGTTAATGATTTTTG
ATAGGCATGCAAATTTAAAGTATAAATATGGGAACAGACATTTTTGGTGCAGGGGATACTATGTAGACACAGTAGGAAGGAACAGAAAAGCAATTGAGCA
ATATATAAGGAGACAATTACAAGAAGATATAGCAAGCGACCAGATAAGTTTAAATGAGTATATAGACCCGTTTACGGGTGAGCGAGTAAATAAAAGCAAA
AAATAAAACCACTTTAGTGGTGGCTTGAGAAGAATATGCGGTTGGCGAACCATTCAACGCGTCTTAAGACTCTGCAAGGACCATGCCCTTATAGGGCTAG
AGCAAACCACCGGATGAGCCGGTGGTTATGAT
ACTACATTAAAAACAAAGGAGGTATCACGATGCGTGATAATGCTAGTTTAGCACATACGCAATGGAATTGTAAATACCATATAGTATTTGTACCAAAATA
TAGGAGACAAGTAATATACGGTAAAATAAAGAAAGACATAGGGCAAATATTAAGAAAGCTATGCGAAATGAAAGGAGTAGAAATAATAGAAGCAAGCCTT
TGTCCCGATCATATACATATGTTAGTTAGTATACCACCAAAAATAAGTGTATCAAGTTTTATGGGATATTTGAAAGGAAAAAGCTCGTTAATGATTTTTG
ATAGGCATGCAAATTTAAAGTATAAATATGGGAACAGACATTTTTGGTGCAGGGGATACTATGTAGACACAGTAGGAAGGAACAGAAAAGCAATTGAGCA
ATATATAAGGAGACAATTACAAGAAGATATAGCAAGCGACCAGATAAGTTTAAATGAGTATATAGACCCGTTTACGGGTGAGCGAGTAAATAAAAGCAAA
AAATAAAACCACTTTAGTGGTGGCTTGAGAAGAATATGCGGTTGGCGAACCATTCAACGCGTCTTAAGACTCTGCAAGGACCATGCCCTTATAGGGCTAG
AGCAAACCACCGGATGAGCCGGTGGTTATGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
477 bp | 158 aa | 130 | 606 | + | No |
Chemistry : Y1
ORF sequence :
MRDNASLAHTQWNCKYHIVFVPKYRRQVIYGKIKKDIGQILRKLCEMKGVEIIEASLCPDHIHMLVSIPPKISVSSFMGYLKGKSSLMIFDRHANLKYKY
GNRHFWCRGYYVDTVGRNRKAIEQYIRRQLQEDIASDQISLNEYIDPFTGERVNKSKK
GNRHFWCRGYYVDTVGRNRKAIEQYIRRQLQEDIASDQISLNEYIDPFTGERVNKSKK
Blast result :
Comments
ISCth10 is 88% aa simialr to ISSep3. There are 2 copies in the genome.
References
1] Miriam Land (2009) Direct submission
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.