ISCth4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009012 ND Clostridium thermocellum
Clostridium thermocellum ATCC 27405
DNA section
IS Length : 1513 bp

Ends


IR Length : 26/33

IRL : GAGATTGTAAAATATTTTATGTAAACTAATTGACTCCTTCTATGATAGAA
IRR : GGCAGTGTAAATATTTTTGTGTAAACTAATTTTCCTTCTATGTTAGTATT

Insertion site


Left flankDirect repeatRight flankDR Length
TACCTCCTCATTAAAGACTTTATGAGGAGGTAAAATGCT0
TCCCCTTTTTAGAAATGAATTTATGAGCTTTT8
AATCGTAACAAAAAATAATAATAAAATAAAAA8
TTTTGCCTGTGTTTTTATTTTGCGGCATGCAA8
GGACAGAGGAGTATTTTAACAATTATCCCGTT8
ACTGTCCCCAAAAATTTATCCTATTTTGAGAC8
GCTGATTAATAAGGTTAACTGTTGAAATTGAT8
ACAGTTCCGTTACTTTTTTGAGAGGGAACGCA8
GACTGCGTCTTGCCTGACGGCAACCCTTGACT8
AAATGATAAAGTAGAAATCATTTTACACCAC9
TATAATTCTTTACAAGCTAAAATATTTTTATAAAAGCCAT0
TATAATTCTTTACAAGCTAAAATATTTTTATAAAAGCCAT0
GTATTAAGTGGGACTGAAAG/AAGGCAAAACATA10
AGTCAAGGGTTATCGATAGATAAGACAAAGTCT7
GAGTTAATGCCGCTTATTATTGAATATTTCAT8

DNA sequence

GAGATTGTAAAATATTTTATGTAAACTAATTGACTCCTTCTATGATAGAATAATAAAGTATAGGAGGAGTTTTTTATGGCAAGAAAAAGGATAATAACAC
CAGAAAAGAAAGAGCTTATCAGAAATCTCATTTCTGAGTACAACATTACTTCAGCAAAGGATTTGCAGGAAGCATTGAAGGATCTGCTCGGAGATACGAT
ACAAAATATGTTGGAAGCAGAGCTGGATGAACATCTCGGATATGAAAAGTACGAATCAACTGAAGAAGCGAAATCAAATTACCGTAACGGGTACACATCA
AAAACATTAAAGTCAAGTGTAGGGCAAGTGGAAATAGATATCCCGCGGGACCGGAATGCAGAATTCGAGCCGAAAATTGTTCCCAGGTATAAAAGGGACA
TTTCAGAAATTGAAAATAAAATAATAGCAATGTATGCGCGGGGGATGTCTACCAGAGAAATCAACGAGCAGATACAGGAAATCTACGGATTTGAAGTATC
TGCCGAGATGGTAAGTAAGATCACTGATAAAATACTACCTGAGATAGAAGAGTGGCAGAAAAGGCCTCTGGGAGAGGTTTATCCGATAGTATTTATTGAC
GCAATTCATTTTTCAGTAAAAAATGACGGCATTGTTGGGAAGAAGGCCGTATATATTGTGCTGGCGATTGATATAGAAGGGCAGAAAGATGTTATCGGTA
TTTATGTAGGAGAAAATGAGAGCTCAAAATTCTGGCTGAGTGTCTTAAATGACCTTAAAAACAGGGGTGTTAAAGACATTCTGATTCTCTGTGCTGATGC
ACTTTCAGGGATAAAGGATGCAATCAATGCGGCTTTTCCGAATACTGAATATCAGAGGTGTATAGTACACCAGATAAGAAACACGCTAAAGTATGTGTCA
GATAAAGACCGAAAGGAATTTGCCAGGGACTTGAAACGGATATATACGGCTCCGAATGAGAAGGCAGGGTACGACCAGATGCTTGAGGTTTCAGAGAAAT
GGGAGAAGAAATACCCGGCAGCTATGAAGAGCTGGAAGAGCAATTGGGATGTTATTTGTCCATTTTTTAAGTATTCGGAGGAACTACGTAAAATCATGTA
TACGACCAATACTATTGAGAGCCTGAATAGCAGTTATAGAAGGATAAACAAATCAAGGACAGTATTTCCTGGCGACCAGTCACTTTTAAAGAGCATATAT
TTAGCTACAGTGAAGATTACTTCAAAATGGACGATGCGTTACAAAAACTGGGGTTTGATACTGGGACAGCTACAGATTATGTTCGAAGGGCGTATATAGT
ATAATCAAGGGGTTCAGGGAAACTCTGGTTTCCTGAACCCCCCTGTAATATTTTATACGCATCATCTTTGTCAAATTTTTCTTTTGTAAGAATTTCTTAT
CAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAA
TATTTACACTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa761299+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARKRIITPEKKELIRNLISEYNITSAKDLQEALKDLLGDTIQNMLEAELDEHLGYEKYESTEEAKSNYRNGYTSKTLKSSVGQVEIDIPRDRNAEFEPK
IVPRYKRDISEIENKIIAMYARGMSTREINEQIQEIYGFEVSAEMVSKITDKILPEIEEWQKRPLGEVYPIVFIDAIHFSVKNDGIVGKKAVYIVLAIDI
EGQKDVIGIYVGENESSKFWLSVLNDLKNRGVKDILILCADALSGIKDAINAAFPNTEYQRCIVHQIRNTLKYVSDKDRKEFARDLKRIYTAPNEKAGYD
QMLEVSEKWEKKYPAAMKSWKSNWDVICPFFKYSEELRKIMYTTNTIESLNSSYRRINKSRTVFPGDQSLLKSIYLATVKITSKWTMRYKNWGLILGQLQ
IMFEGRI

 

Blast result :
Comments
ISCth4 is 74% aa similar to ISDet4. There are 15 copies in the genome.
References
1] Miriam Land (2009) Direct submission

2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Wu,J.H.D., Newcomb,M. and Richardson,P. (2007) Direct submission GenBank.