ISMex3
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 22/25
IRL : GAGCTATGCGGGAGATTGGGTGACGACGGTGTGTTGAAGGCGGCGTATCG
IRR : GAGCTATGCAGGATTTTAGGTGACGGAGGCGGTCAGGCGGCGCGGTGATC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCTGCTAGAA | CCGACCCGG | AAGTGACGCC | 9 |
| TCTTGGCGAT | GTCGCCAAGC | 0 | |
| GACTGCGCCC | CGTCTGGGCC | 0 | |
| GCTCAAGCGG | CCGCGCCGG | CACGTCAGTG | 9 |
| GTCATCGACG | AGTTGGAGA | AGGCTGTCGC | 9 |
| GCCGGCAGCC | GCTGACCGC | CGGTCCGCGG | 9 |
| AAGGAGTCGG | CCTGAGGACA | 0 | |
| CCTCGATGGA | ACTCGCGAT | CACCGACGAC | 9 |
| CTCGCAGGGC | CCCTCGCGAC | 0 | |
| AGCAGTTCGA | GGTCCAGCG | CGTCGACTAC | 9 |
| ACGTCGGAGT | CGTCGGGGA | TCTCTGAGGC | 9 |
| TCTATGTGGC | ACCCAAGAC | GGCCGCCTAC | 9 |
| GGCGTGCCGG | TCCTGCGGA | AGGCAACGGG | 9 |
| TGGTAGCGTG | GCCCTCCTC | AGGCAAAGGT | 9 |
| CGGCCGGCCC | CTCGATCGA | CGGCAAGGGC | 9 |
| GATGCCGACG | CTCTGCCTA | AAGGCACGGA | 9 |
| GGAGGGGTGG | CGCGTTCGC | AAGGACGGTT | 9 |
| GCTCTCCAGG | ATCTCCCAG | GCCTCGTCAG | 9 |
| AGGGAGCCTG | TAAGTCAAA | CGCTCACGGC | 9 |
| CTGCTCGGCT | CAGCCGCGG | CAGGGTTTAT | 9 |
| TCCGGCACGG | GTCGCGACG | TGGGCCGGTA | 9 |
| GTAAGCGAAG | AGGGCACGG | TGCCGCCGAC | 9 |
| TTTTCATTGT | TCTGCTCCG | TACGCTCACC | 9 |
| CGTCGGGCAG | CCGCGTGTG | CGGCATCACC | 9 |
| TCGTCGGCGA | TGGCTGCCC | AGCCGTACGG | 9 |
DNA sequence
GAGCTATGCGGGAGATTGGGTGACGACGGTGTGTTGAAGGCGGCGTATCGAGGCGGGTGTCGAAGCCTGCCAGAACCTCTCAGCGAGAGCGATACGCCAT
GGAGACACCTACCAACATCGTCCGGCTTCGTCAGCCCGAAGACCTCGACGATCCCCTGACCGAGGTGCTGCGCGCCGGGGCCCGCCGCCTGCTCGCCCAA
GCTGTTGAGATGGAGGCGGACGCGTTCCTGAGCGCGATGCAGGATCTGCGGCTTCCGGACGGACGCGCGCGGCTGGTGCGGCACGGCCATGGCCCGGAGC
GGGCGATCCAGACCGGCATCGGCCCGGTGCCGGTGGCGCGGGTTCGTGTCCGAGATCGCGGCGCGAGCGGATCTGAGGACCGGGTTCGGTTCACCTCGAC
GCTCCTGCCGAAGTGGGCGCGGCGCACCCGCAGCCTGGATGCGTTACTGCCGGTCCTGTACCTACGCGGTGTCTCGACCGGCGACTTCCAGGAGGCGCTG
GCCGCCCTTCTGGGTCGGGATGCTCCGAACCTCTCGCCGGCCGTCATTGCCCGGCTGACCGCGGCCTGGGCGGACGAGTATGCCCGCTGGCAGGGCCGCG
ATCTCTCCGCACGCCGCTACGTCTATGTCTGGGCCGACGGCGTCTACCTGCAGGCCCGGATGGAGGACCAGGCCGAGTGCATGCTCGTGCTGATCGGGGC
GACGCCCGAGGGCCGGAAAGAACTCGTCGGCTTCCAGGTGGGCGTGCGCGAGAGCGCCCAGAGCTGGCGCGAGCTGCTCGTCGACGTGAAGCGGCGTGGG
CTGTCGATCGCGCCCGAGATCGCGGTCGGCGACGGCGCACTCGGCTTCTGGCAGGCCCTGGACGAGGTCTTTCCGGGCACCGCTCACCAACGGTGTTGGG
TTCACAAAGCGGCCAACGTCCTCGACAAGGTGCCGAAGTCCGTTCAGGGCGCGATGAAGGTGGATCTGCGTGAGATCCACGGTGCGCCGACCCGGGCGGC
GGCCGAGGCGGCGCTGGCTGTCTTCGTCGAGAAGTACGGGGCCAAGTACCCGCGCGCCGCCACCTGCCTGACCAAGGACCGGGAGGCGCTGCTGGCGTTC
TACGACTTCCCGGCCGAGCACTGGGACCACCTGCGCAGCTCGAACCCGATCGAGAGCGTGTTCGCCACGGTGCGGCATCGGACCGTGCGGACCAAAGGTG
CACTCTCGGCCACGACCGCCAAGCTGATGGTGTTCAAGCTGGTGATGGCAGCCTCGAAAACCTGGCGACGGTTGAAGGGCGAAAACCAGTTGCCGAAGGT
CGTGGCCGGCGTCATCTTCCGCGACGGGACCGAGGTCACCGCGAGCCCAGATCACCGCGCCGCCTGACCGCCTCCGTCACCTAAAATCCTGCATAGCTC
GGAGACACCTACCAACATCGTCCGGCTTCGTCAGCCCGAAGACCTCGACGATCCCCTGACCGAGGTGCTGCGCGCCGGGGCCCGCCGCCTGCTCGCCCAA
GCTGTTGAGATGGAGGCGGACGCGTTCCTGAGCGCGATGCAGGATCTGCGGCTTCCGGACGGACGCGCGCGGCTGGTGCGGCACGGCCATGGCCCGGAGC
GGGCGATCCAGACCGGCATCGGCCCGGTGCCGGTGGCGCGGGTTCGTGTCCGAGATCGCGGCGCGAGCGGATCTGAGGACCGGGTTCGGTTCACCTCGAC
GCTCCTGCCGAAGTGGGCGCGGCGCACCCGCAGCCTGGATGCGTTACTGCCGGTCCTGTACCTACGCGGTGTCTCGACCGGCGACTTCCAGGAGGCGCTG
GCCGCCCTTCTGGGTCGGGATGCTCCGAACCTCTCGCCGGCCGTCATTGCCCGGCTGACCGCGGCCTGGGCGGACGAGTATGCCCGCTGGCAGGGCCGCG
ATCTCTCCGCACGCCGCTACGTCTATGTCTGGGCCGACGGCGTCTACCTGCAGGCCCGGATGGAGGACCAGGCCGAGTGCATGCTCGTGCTGATCGGGGC
GACGCCCGAGGGCCGGAAAGAACTCGTCGGCTTCCAGGTGGGCGTGCGCGAGAGCGCCCAGAGCTGGCGCGAGCTGCTCGTCGACGTGAAGCGGCGTGGG
CTGTCGATCGCGCCCGAGATCGCGGTCGGCGACGGCGCACTCGGCTTCTGGCAGGCCCTGGACGAGGTCTTTCCGGGCACCGCTCACCAACGGTGTTGGG
TTCACAAAGCGGCCAACGTCCTCGACAAGGTGCCGAAGTCCGTTCAGGGCGCGATGAAGGTGGATCTGCGTGAGATCCACGGTGCGCCGACCCGGGCGGC
GGCCGAGGCGGCGCTGGCTGTCTTCGTCGAGAAGTACGGGGCCAAGTACCCGCGCGCCGCCACCTGCCTGACCAAGGACCGGGAGGCGCTGCTGGCGTTC
TACGACTTCCCGGCCGAGCACTGGGACCACCTGCGCAGCTCGAACCCGATCGAGAGCGTGTTCGCCACGGTGCGGCATCGGACCGTGCGGACCAAAGGTG
CACTCTCGGCCACGACCGCCAAGCTGATGGTGTTCAAGCTGGTGATGGCAGCCTCGAAAACCTGGCGACGGTTGAAGGGCGAAAACCAGTTGCCGAAGGT
CGTGGCCGGCGTCATCTTCCGCGACGGGACCGAGGTCACCGCGAGCCCAGATCACCGCGCCGCCTGACCGCCTCCGTCACCTAAAATCCTGCATAGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1311 bp | 436 aa | 57 | 1367 | + | No |
Chemistry : DDE
ORF sequence :
VSKPARTSQRERYAMETPTNIVRLRQPEDLDDPLTEVLRAGARRLLAQAVEMEADAFLSAMQDLRLPDGRARLVRHGHGPERAIQTGIGPVPVARVRVRD
RGASGSEDRVRFTSTLLPKWARRTRSLDALLPVLYLRGVSTGDFQEALAALLGRDAPNLSPAVIARLTAAWADEYARWQGRDLSARRYVYVWADGVYLQA
RMEDQAECMLVLIGATPEGRKELVGFQVGVRESAQSWRELLVDVKRRGLSIAPEIAVGDGALGFWQALDEVFPGTAHQRCWVHKAANVLDKVPKSVQGAM
KVDLREIHGAPTRAAAEAALAVFVEKYGAKYPRAATCLTKDREALLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAAS
KTWRRLKGENQLPKVVAGVIFRDGTEVTASPDHRAA
RGASGSEDRVRFTSTLLPKWARRTRSLDALLPVLYLRGVSTGDFQEALAALLGRDAPNLSPAVIARLTAAWADEYARWQGRDLSARRYVYVWADGVYLQA
RMEDQAECMLVLIGATPEGRKELVGFQVGVRESAQSWRELLVDVKRRGLSIAPEIAVGDGALGFWQALDEVFPGTAHQRCWVHKAANVLDKVPKSVQGAM
KVDLREIHGAPTRAAAEAALAVFVEKYGAKYPRAATCLTKDREALLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAAS
KTWRRLKGENQLPKVVAGVIFRDGTEVTASPDHRAA
Blast result :
Comments
ISMex3 is 71% aa similar to ISPpa1.
References