ISTde1
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE017226 | ND | Treponema denticola | Treponema denticola ATCC 35405 |
DNA section
IS Length : 1327 bp
Ends
IR Length : 19/29
IRL : TGTTGAAACACAGTGATAAAGTCCCCTTGTAAGCACCGTTAAAATGTCCC
IRR : TGTCAATACACCATAGAAATGTCCCCTGTTTTAGCACCATAGAAATGTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCTTTGCC | AACAGCTTTAGCAATAC | TTGACATAAA | 17 |
AATTTATACA | AACAAAAAATCGTCCTA | TTGACATATT | 17 |
ATAAAAGTCG | ACGGATAAAAACCGGCC | TTGACAGAGA | 17 |
DNA sequence
TGTTGAAACACAGTGATAAAGTCCCCTTGTAAGCACCGTTAAAATGTCCCCATAATAAATTGTGGAGATGACGGTGATGGAAGAAAAATTAAATATGGGA
AAAAAGGAAAGAACAAGGGGAAAAATACTGGCAATGGTAGTAGAGCGTCAAATAACCTTAAAACAAGCAGCCATAAAAATGCAGGTATGTTACAGACAAG
CAAAGCGTATTTACAAAAGGTATTTGGAACAAGGAGATAAAGGTCTTTTGCATAAAAGTCTAGGAAAACCTTCCTCAAAAAGAGTCGATGAAAATATAAA
GAAAAAATGCTTGGAACTGTACGCTGAAAAATATCATGATTTTGGTCCTACTCTGGCAGCAGAAAAACTTGAAGAACTTGATGGGATAAAAATAAATCAT
GAAACGCTTAGGCGATTACTAATCAAAGCAGGTCTTTGGAGTAGAAAACGGCGAAGGAACATTCATCGAAGTAGAAGAGAAAGAAGAGAATGTTTTGGAC
AGATGCTTCAATTTGACGGAAGTCATCATAAATGGTTTGAGCAAAGAGGACCTAAATGCTGTTTAATGAATATAGTCGATGATGCAACAGGAATGACACA
GTCGTTTTTGACGGAACAAGAGACAACGGAAGCTGCTATGAGGCTTTTATGGGGCTGGATAGACTGTCATGGGATACCTCAAGCGGTATGTTGTGATAAA
AAAAATGCTTATGTTATTACACGGGAGCCAACTATGTCAGAAATAATAAAAAATGTAAGGCCTAAAACCCCGTTTCAAAAAGCTTGTGAAAAACTTGGAA
TACAAATAATAGTGGCTCATTCGGCTCAATCTAAAGGCCGTGTAGAAAGGAATCATAGTGTTTATCAAGACAGATTTGTAAAAGAATTACGCCTTGCAAA
AATAAATACTATTGAAAAGGCTAATGCTTTTTTACAAAAAGAGTATTTACCGAAAATAAATAAAAAGTTCGCCATTGCACCTTTAGACTCACAAGATGGG
CATGCTCCTTGTCCAAGTAAAGAACAGCTTGCTAATATTTTCTGCTATGAAGAACAAAGGGTTGTAAGTAATGATTTTGTTATCAGGTATGAAAACAGAC
TTTTTCAAATAACAAAATCGAACCGTAATATACCGAGACCTAAAACAAACATATTGTTAAGAGAACTCTTGGATGGAACCATAAAACTAATATGGAACAA
CAAAGAGCTTGATTTCTTAGAAATAACTAAAGAGTATCTTAAGGAGGTAAAATTATCATAACCGGCATAACAAAAGGGGACATTTCTATGGTGCTAAAAC
AGGGGACATTTCTATGGTGTATTGACA
AAAAAGGAAAGAACAAGGGGAAAAATACTGGCAATGGTAGTAGAGCGTCAAATAACCTTAAAACAAGCAGCCATAAAAATGCAGGTATGTTACAGACAAG
CAAAGCGTATTTACAAAAGGTATTTGGAACAAGGAGATAAAGGTCTTTTGCATAAAAGTCTAGGAAAACCTTCCTCAAAAAGAGTCGATGAAAATATAAA
GAAAAAATGCTTGGAACTGTACGCTGAAAAATATCATGATTTTGGTCCTACTCTGGCAGCAGAAAAACTTGAAGAACTTGATGGGATAAAAATAAATCAT
GAAACGCTTAGGCGATTACTAATCAAAGCAGGTCTTTGGAGTAGAAAACGGCGAAGGAACATTCATCGAAGTAGAAGAGAAAGAAGAGAATGTTTTGGAC
AGATGCTTCAATTTGACGGAAGTCATCATAAATGGTTTGAGCAAAGAGGACCTAAATGCTGTTTAATGAATATAGTCGATGATGCAACAGGAATGACACA
GTCGTTTTTGACGGAACAAGAGACAACGGAAGCTGCTATGAGGCTTTTATGGGGCTGGATAGACTGTCATGGGATACCTCAAGCGGTATGTTGTGATAAA
AAAAATGCTTATGTTATTACACGGGAGCCAACTATGTCAGAAATAATAAAAAATGTAAGGCCTAAAACCCCGTTTCAAAAAGCTTGTGAAAAACTTGGAA
TACAAATAATAGTGGCTCATTCGGCTCAATCTAAAGGCCGTGTAGAAAGGAATCATAGTGTTTATCAAGACAGATTTGTAAAAGAATTACGCCTTGCAAA
AATAAATACTATTGAAAAGGCTAATGCTTTTTTACAAAAAGAGTATTTACCGAAAATAAATAAAAAGTTCGCCATTGCACCTTTAGACTCACAAGATGGG
CATGCTCCTTGTCCAAGTAAAGAACAGCTTGCTAATATTTTCTGCTATGAAGAACAAAGGGTTGTAAGTAATGATTTTGTTATCAGGTATGAAAACAGAC
TTTTTCAAATAACAAAATCGAACCGTAATATACCGAGACCTAAAACAAACATATTGTTAAGAGAACTCTTGGATGGAACCATAAAACTAATATGGAACAA
CAAAGAGCTTGATTTCTTAGAAATAACTAAAGAGTATCTTAAGGAGGTAAAATTATCATAACCGGCATAACAAAAGGGGACATTTCTATGGTGCTAAAAC
AGGGGACATTTCTATGGTGTATTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1185 bp | 394 aa | 77 | 1261 | + | No |
Chemistry : DDE
ORF sequence :
MEEKLNMGKKERTRGKILAMVVERQITLKQAAIKMQVCYRQAKRIYKRYLEQGDKGLLHKSLGKPSSKRVDENIKKKCLELYAEKYHDFGPTLAAEKLEE
LDGIKINHETLRRLLIKAGLWSRKRRRNIHRSRRERRECFGQMLQFDGSHHKWFEQRGPKCCLMNIVDDATGMTQSFLTEQETTEAAMRLLWGWIDCHGI
PQAVCCDKKNAYVITREPTMSEIIKNVRPKTPFQKACEKLGIQIIVAHSAQSKGRVERNHSVYQDRFVKELRLAKINTIEKANAFLQKEYLPKINKKFAI
APLDSQDGHAPCPSKEQLANIFCYEEQRVVSNDFVIRYENRLFQITKSNRNIPRPKTNILLRELLDGTIKLIWNNKELDFLEITKEYLKEVKLS
LDGIKINHETLRRLLIKAGLWSRKRRRNIHRSRRERRECFGQMLQFDGSHHKWFEQRGPKCCLMNIVDDATGMTQSFLTEQETTEAAMRLLWGWIDCHGI
PQAVCCDKKNAYVITREPTMSEIIKNVRPKTPFQKACEKLGIQIIVAHSAQSKGRVERNHSVYQDRFVKELRLAKINTIEKANAFLQKEYLPKINKKFAI
APLDSQDGHAPCPSKEQLANIFCYEEQRVVSNDFVIRYENRLFQITKSNRNIPRPKTNILLRELLDGTIKLIWNNKELDFLEITKEYLKEVKLS
Blast result :
Comments
There are 3 copies of ISTde1 in this strain. The right end of ISTde1 appears to insert preferentially near the target sequence TTGACA which is identical to the 6 terminal residues of the right end.
ISTde1 is 56% aa similar to ISCARN112.
ISTde1 is 56% aa similar to ISCARN112.
References
1] Bob DeBoy (2005) Direct submission
2] Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F., Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H., Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.F., Durkin,A.S., Daugherty,S.C., Shetty,J., Shvartsbeyn,A., Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J.A., Ayodeji,B., Shatsman,S., McLeod,M.P., Majs,D., Howell,J.K., Pal,S., Amin,A., Vashisth,P., McNeill,T.Z., Weinstock,G.M., Norris,S.J., Fraser,C.M. and Paulsen,I.T. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (15), 5646-5651
2] Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F., Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H., Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.F., Durkin,A.S., Daugherty,S.C., Shetty,J., Shvartsbeyn,A., Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J.A., Ayodeji,B., Shatsman,S., McLeod,M.P., Majs,D., Howell,J.K., Pal,S., Amin,A., Vashisth,P., McNeill,T.Z., Weinstock,G.M., Norris,S.J., Fraser,C.M. and Paulsen,I.T. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (15), 5646-5651