ISfinder Mirror Site

ISVsa7

Family IS30
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_011312	ND	Aliivibrio salmonicida	Aliivibrio salmonicida LFI1238 chromosome 1

DNA section

IS Length : 1054 bp

Ends

IR Length : 22/28

IRL : CCTAGGTTCCAAGAATAACCGACACACTTTGGTATAGATTTGAGAGTCAG
IRR : GCTAGATCGTAACAATAACCGACACACTCTTACCGTTTAAAAACTCGCTC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TACAAGGTATTTCTTAA	AAA	TTCATCACAAGAT	3

DNA sequence

CCTAGGTTCCAAGAATAACCGACACACTTTGGTATAGATTTGAGAGTCAGTTGCCTATAAGCTTCAAGCTCTCACACAATCAACTAAGGTAACCCCATGG
GATACCAATATAAGCAACTGACACTAGGTGAAAGATACCAGATTGAAGCGTGGAATACACATAGTATTTCTGCTCGTGAAATAGGACAAAAATTAAAACG
GAGCAATGGCTCCATTTCAAAGGAACTACGACGTTGTCCTGCTGGAAGCTATTCTGCCGAGCAAGCGCATAAACACGCTTTCCAAAAAAGAACACTTTCG
ATTAAGCACACAAAATGCAGCCAAAAGAATAAAAAAATAATTCACCTATATCTTCAGCTTGGTTGGAGCCCAGAGCAAATATCTGGACGAATGCGTAGAG
AAAAAATAGAAAATACAATATGTTGCAGTACTATTTACAACGCAATTAAAAGAGAGCAGTGGCAAAGGATGCTTGCTCGAAAAGGCAAAAAATACAAACA
ACGCAAAGGTGTAGAAGCAGGAGCAAGACTCATTCCTAACCGCATTGATATATCTCAACGCCCTGCTATTGTCGATGATAAATCTGAGGTTGGTCACTGG
GAAGGTGACACTGTTTATGGTCAAGACGGGTATTTAGTAACGATGGTAGAACGAGTGTCTAAGCTATTAGTTACGTGCAAAGTACGCAATAAATCCAAAA
AGGCCGTTACTCGCGGGATAAATCGCATGATGAAGCCCTTTAAAGAGCTTTGCAAAACAATCACATTTGATAATGGCGGAGAGTTCGCAGGTCATGCTAA
GATAGCTAAGCATCTGAACTGTGACATTTATTTTGCTAAACCTTACCATTCTTGGCAACGAGGTTTGAATGAAAATACCAATGGTTTACTAAGACGTTTT
TTCCCAAAGGGAATGGCCATTGGAGAACTTACTGCAAAAGAGATTAAACAGGCAGAGTTTTTGATTAATTCTCGACCTAGAAAGACATTAAATTTTCTGA
GTCCGAGCGAGTTTTTAAACGGTAAGAGTGTGTCGGTTATTGTTACGATCTAGC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
957 bp	318 aa	97	1053	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGYQYKQLTLGERYQIEAWNTHSISAREIGQKLKRSNGSISKELRRCPAGSYSAEQAHKHAFQKRTLSIKHTKCSQKNKKIIHLYLQLGWSPEQISGRMR
REKIENTICCSTIYNAIKREQWQRMLARKGKKYKQRKGVEAGARLIPNRIDISQRPAIVDDKSEVGHWEGDTVYGQDGYLVTMVERVSKLLVTCKVRNKS
KKAVTRGINRMMKPFKELCKTITFDNGGEFAGHAKIAKHLNCDIYFAKPYHSWQRGLNENTNGLLRRFFPKGMAIGELTAKEIKQAEFLINSRPRKTLNF
LSPSEFLNGKSVSVIVTI

Blast result :

Comments

ISVsa7 is 57% aa similar to ISPpu17.

References

1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.