ISVsa6
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011312 | ND | Aliivibrio salmonicida | Aliivibrio salmonicida LFI1238 chromosome 1 |
DNA section
IS Length : 1001 bp
Ends
IR Length : 17
IRL : ACCTGAATTCTGGATAAGGCTGAACTAATTGCCCACCTAACGATCAGATC
IRR : ACCTGAATTCTGGATAAAACATGCTTTAAGCGAGGATTAGTTCAAATTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATATGTTTTAGT | TA | TTTAATGGTAAAGAA | 2 |
DNA sequence
ACCTGAATTCTGGATAAGGCTGAACTAATTGCCCACCTAACGATCAGATCTTTCGACCAAGAATTATTTGAACGTATTTTAAAAGGTGGGCAAGATGAAT
AAATTAGTTGATATATTTTGTGATGTCGATGATTTTTGTTATCAATTCTTATCTCAATGGGAAAAATACCTTGTTGAGGCTAGTGAGAGAAAAAGAAAAC
GTCAGTCAGTAATGTCTACTAGTGAATGTATGACTATTGTCATCGCTTTTCATCAATCAAATCATAGAGATTTCAAGAACTTCTATATCGGGTTAGTTCA
TCAATATTGGAAAGGATACTTTCCAAATTTACTTAGCTACACTCGATTTGTGAGCAAAATGCCTAGCCTAATCGCCCCAATGTGTGCCTATTTTCAATCT
ATCAAAGGTAAGCCGACTGGCATTGCTTTTGTTGACTCCACGAGTCTTAAAGTATGCCATAACATTCGAATTCCTCGCCATAAAGTCTTTGATGGTGTTG
CGAAAAGAGGAAAAGGTACCATGGGATGGTTTTTCGGCTTCAAACTTCATTTATTGATTAACCATCTTGGAGAAATTATTTCGCTGAAAATCACAGCTGG
CAATGTAAATGATAGGACTCCTGTACCTGATTTATGCAAAGAACTCTCGGGGAAATTGTACGCTGATAAAGGGTACATAGGTAAAAAGTTGAGTGAGAGC
TTAAAGAACTCTGATGTCGATTTAGTGACTACCTCGCGAAAAAACATGAAAGCAAAAGAGATAAGTGCTTTTGATAAGGCTATGTTATCAAAGAGATACA
TTATCGAAACGATAAATGACCAATTGAAGAATATCTCTCAAATTGAACATAGCCGTCATCGTAGCGTGACTGGTTTCATGCTAAATGTAATTTCAGGCGT
TGTGGCTTATTGTTTAAAAAAACAAAAGCCACGAATTAAGCTATCAGAATGTGAATTTGAACTAATCCTCGCTTAAAGCATGTTTTATCCAGAATTCAGG
T
AAATTAGTTGATATATTTTGTGATGTCGATGATTTTTGTTATCAATTCTTATCTCAATGGGAAAAATACCTTGTTGAGGCTAGTGAGAGAAAAAGAAAAC
GTCAGTCAGTAATGTCTACTAGTGAATGTATGACTATTGTCATCGCTTTTCATCAATCAAATCATAGAGATTTCAAGAACTTCTATATCGGGTTAGTTCA
TCAATATTGGAAAGGATACTTTCCAAATTTACTTAGCTACACTCGATTTGTGAGCAAAATGCCTAGCCTAATCGCCCCAATGTGTGCCTATTTTCAATCT
ATCAAAGGTAAGCCGACTGGCATTGCTTTTGTTGACTCCACGAGTCTTAAAGTATGCCATAACATTCGAATTCCTCGCCATAAAGTCTTTGATGGTGTTG
CGAAAAGAGGAAAAGGTACCATGGGATGGTTTTTCGGCTTCAAACTTCATTTATTGATTAACCATCTTGGAGAAATTATTTCGCTGAAAATCACAGCTGG
CAATGTAAATGATAGGACTCCTGTACCTGATTTATGCAAAGAACTCTCGGGGAAATTGTACGCTGATAAAGGGTACATAGGTAAAAAGTTGAGTGAGAGC
TTAAAGAACTCTGATGTCGATTTAGTGACTACCTCGCGAAAAAACATGAAAGCAAAAGAGATAAGTGCTTTTGATAAGGCTATGTTATCAAAGAGATACA
TTATCGAAACGATAAATGACCAATTGAAGAATATCTCTCAAATTGAACATAGCCGTCATCGTAGCGTGACTGGTTTCATGCTAAATGTAATTTCAGGCGT
TGTGGCTTATTGTTTAAAAAAACAAAAGCCACGAATTAAGCTATCAGAATGTGAATTTGAACTAATCCTCGCTTAAAGCATGTTTTATCCAGAATTCAGG
T
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
882 bp | 293 aa | 95 | 976 | + | No |
Chemistry : DDE
ORF sequence :
MNKLVDIFCDVDDFCYQFLSQWEKYLVEASERKRKRQSVMSTSECMTIVIAFHQSNHRDFKNFYIGLVHQYWKGYFPNLLSYTRFVSKMPSLIAPMCAYF
QSIKGKPTGIAFVDSTSLKVCHNIRIPRHKVFDGVAKRGKGTMGWFFGFKLHLLINHLGEIISLKITAGNVNDRTPVPDLCKELSGKLYADKGYIGKKLS
ESLKNSDVDLVTTSRKNMKAKEISAFDKAMLSKRYIIETINDQLKNISQIEHSRHRSVTGFMLNVISGVVAYCLKKQKPRIKLSECEFELILA
QSIKGKPTGIAFVDSTSLKVCHNIRIPRHKVFDGVAKRGKGTMGWFFGFKLHLLINHLGEIISLKITAGNVNDRTPVPDLCKELSGKLYADKGYIGKKLS
ESLKNSDVDLVTTSRKNMKAKEISAFDKAMLSKRYIIETINDQLKNISQIEHSRHRSVTGFMLNVISGVVAYCLKKQKPRIKLSECEFELILA
Blast result :
Comments
ISVsa6 is 75% aa similar to ISSde7.
References
1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.