ISVsa6

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011312 ND Aliivibrio salmonicida
Aliivibrio salmonicida LFI1238 chromosome 1
DNA section
IS Length : 1001 bp

Ends


IR Length : 17

IRL : ACCTGAATTCTGGATAAGGCTGAACTAATTGCCCACCTAACGATCAGATC
IRR : ACCTGAATTCTGGATAAAACATGCTTTAAGCGAGGATTAGTTCAAATTCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATATGTTTTAGTTATTTAATGGTAAAGAA2

DNA sequence

ACCTGAATTCTGGATAAGGCTGAACTAATTGCCCACCTAACGATCAGATCTTTCGACCAAGAATTATTTGAACGTATTTTAAAAGGTGGGCAAGATGAAT
AAATTAGTTGATATATTTTGTGATGTCGATGATTTTTGTTATCAATTCTTATCTCAATGGGAAAAATACCTTGTTGAGGCTAGTGAGAGAAAAAGAAAAC
GTCAGTCAGTAATGTCTACTAGTGAATGTATGACTATTGTCATCGCTTTTCATCAATCAAATCATAGAGATTTCAAGAACTTCTATATCGGGTTAGTTCA
TCAATATTGGAAAGGATACTTTCCAAATTTACTTAGCTACACTCGATTTGTGAGCAAAATGCCTAGCCTAATCGCCCCAATGTGTGCCTATTTTCAATCT
ATCAAAGGTAAGCCGACTGGCATTGCTTTTGTTGACTCCACGAGTCTTAAAGTATGCCATAACATTCGAATTCCTCGCCATAAAGTCTTTGATGGTGTTG
CGAAAAGAGGAAAAGGTACCATGGGATGGTTTTTCGGCTTCAAACTTCATTTATTGATTAACCATCTTGGAGAAATTATTTCGCTGAAAATCACAGCTGG
CAATGTAAATGATAGGACTCCTGTACCTGATTTATGCAAAGAACTCTCGGGGAAATTGTACGCTGATAAAGGGTACATAGGTAAAAAGTTGAGTGAGAGC
TTAAAGAACTCTGATGTCGATTTAGTGACTACCTCGCGAAAAAACATGAAAGCAAAAGAGATAAGTGCTTTTGATAAGGCTATGTTATCAAAGAGATACA
TTATCGAAACGATAAATGACCAATTGAAGAATATCTCTCAAATTGAACATAGCCGTCATCGTAGCGTGACTGGTTTCATGCTAAATGTAATTTCAGGCGT
TGTGGCTTATTGTTTAAAAAAACAAAAGCCACGAATTAAGCTATCAGAATGTGAATTTGAACTAATCCTCGCTTAAAGCATGTTTTATCCAGAATTCAGG
T
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
882 bp293 aa95976+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKLVDIFCDVDDFCYQFLSQWEKYLVEASERKRKRQSVMSTSECMTIVIAFHQSNHRDFKNFYIGLVHQYWKGYFPNLLSYTRFVSKMPSLIAPMCAYF
QSIKGKPTGIAFVDSTSLKVCHNIRIPRHKVFDGVAKRGKGTMGWFFGFKLHLLINHLGEIISLKITAGNVNDRTPVPDLCKELSGKLYADKGYIGKKLS
ESLKNSDVDLVTTSRKNMKAKEISAFDKAMLSKRYIIETINDQLKNISQIEHSRHRSVTGFMLNVISGVVAYCLKKQKPRIKLSECEFELILA

 

Blast result :
Comments
ISVsa6 is 75% aa similar to ISSde7.
References
1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.