ISfinder Mirror Site

ISVsa17

Family ISNCY
Group ISPlu15

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_011312	ND	Aliivibrio salmonicida	Aliivibrio salmonicida LFI1238 chromosome 1

DNA section

IS Length : 1038 bp

Ends

IR Length : 5

IRL : ATTATTTTCCATTCGATTAGTGGTATACTTAACTTAATCAGTAGAGTGGA
IRR : ATTATGACGTAATGTGCTAATGAGAAATAAGTTCTAATTCACGAGAGCTA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TAACAGAGACTAA		GTAATGCATATTT	0

DNA sequence

ATTATTTTCCATTCGATTAGTGGTATACTTAACTTAATCAGTAGAGTGGATCACTTTTCATGAGTAAGAAAAACACAACAACACCCCATGATGGGTTGTT
TAAAGCCTTTTTAACAACGCCTGATACCGCTAAAGATATGTTGGAAATACACTTACCAACGCATCTTAAAACGTTATGCGACCTATCAACATTGAAACTG
GAATCAGGTTCGTTTTTAGAAGACGACTTACGTCCGTATTATTCAGACGTGCTCTACTCAATGAAGACAGAATGTGGTGACGGCTATATTTATGCTCTTA
TTGAGCACCAAAGTAGCCCTGACGAGCACATGGCCTTTCGTATGTTCAGATATGCTATTGCAGCCATGCAAAAGCATCTTGACGCTGGAAACAAAGATCT
GCCATTAGTTGTTCCTCTGCTGTTTTACCACGGTAAAACATCACCATATCCATACAGCATGAATTGGTTAGATTGTTTTACTAAACCAGAAATGGCGAAA
GCTCTCTATAACAATGATTTTCCATTAGTGGATGTCACTGTTATGGATGACAGCGAGATAATGCAGCACAAGCGCATTGCACTATTAGAGCTAGTCCAGA
AACACATTTACCAAAAAGACATCAATGATATTCTTGAATCGTTAGCCATCTTATTATTAAATGACTACCACACAGACAGCCAAGTCCGAACCCTGATTGA
ATACTTAGTAACGGTAGGGGAAACTCAGAACGTGAATACGTTATTGGAAGAGTTGGCACAGCAAGTACCAAAACACGAGGGCACACTAATGACAATAGCA
GAGCAACTAATTTTGCAAGGCGAGCAAAAAGGTCTTCAACAGGGACTTCAACAAGGTCGTCAAGAAGGCGAACAAAAAGGCCGTCAAGAAGGCCGTCAAG
AAGGCCGTCAAGATACATTGAAAGAAATGGCTCGTAACTTACTTCTCTCAGGCGTTGATAAAGATGCAATCATGAAAGCGACTGGATTTAGCTCTCGTGA
ATTAGAACTTATTTCTCATTAGCACATTACGTCATAAT

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
963 bp	320 aa	60	1022	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSKKNTTTPHDGLFKAFLTTPDTAKDMLEIHLPTHLKTLCDLSTLKLESGSFLEDDLRPYYSDVLYSMKTECGDGYIYALIEHQSSPDEHMAFRMFRYAI
AAMQKHLDAGNKDLPLVVPLLFYHGKTSPYPYSMNWLDCFTKPEMAKALYNNDFPLVDVTVMDDSEIMQHKRIALLELVQKHIYQKDINDILESLAILLL
NDYHTDSQVRTLIEYLVTVGETQNVNTLLEELAQQVPKHEGTLMTIAEQLILQGEQKGLQQGLQQGRQEGEQKGRQEGRQEGRQDTLKEMARNLLLSGVD
KDAIMKATGFSSRELELISH

Blast result :

Comments

ISVsa17 is 73% aa similar to ISPlu15.

References

1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.