ISVsa13
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011312 | ND | Aliivibrio salmonicida | Aliivibrio salmonicida LFI1238 |
DNA section
IS Length : 1226 bp
Ends
IR Length : 16/22
IRL : CAGGGCAAGATCGTGAACGTTTTTTAAACAAAAAAGATCGGTTTGACGAT
IRR : CAGGGCAACCGCATGAGTGTTTAGTTTTTAGACAACCCCGCAATCAACAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCTCAAAAT | GGATAAAAAG | TGTCTCAGCT | 10 |
DNA sequence
CAGGGCAAGATCGTGAACGTTTTTTAAACAAAAAAGATCGGTTTGACGATCTCATTTACTTGTGATCTTATACTCCTTTTTTAGGGAGCCAGTATGCATA
TCGACAGCTTCAAAGAGCATTTTAAAATCATTGCTGATCAACGCCAAAGTGCGAAAGTTACTTACCCTCTGTTTGACGTTTTATTTGGTTCTCTTTGCGC
TGTGATCGCCGGTGCTAAAGGCTGGTTTGACATTCGAGAGTACATTCAAGGCCATCACCATTGGTTTCAAAAGAACGATATGTTCATGGTTGATATTCCT
GCTGACGATACTATTGCTCGGATCATATCAACGATAGAGCCGGTGCAGTTTCACGAATGTTTTTTGAACTGGATGCAATCAGTACATACTTTGACTGAAG
GTCAAGTGATCGCAATTGATGGTAAAACACTTCGCGGCTCATACAACCGAGAAGACCGAGCCAGCACAATCCATATGATAAGTGCTTACGCCTCTTCGAA
TAAACTGGTGCTTGGACAGATAAAAACCGACCAAAAGAGCAATGAAATTACCGCCATTCCTGAACTTTTAAAGATGCTAGACTTACGTGGTGCTCTAGTC
ACCATCGATGCGATGGCATGCCAAACAAAAATTGCCAAAGCCATAGTTAATCAAGACGGAGACTACTTGCTTGCGGTTAAAAACAACCAAGGTCAACTGC
GTAAAGCGGTAGAGAAAGCGTTTAGTCATCAAAGAGCTACGACAGCGCAAGACATAGAATTCGAGAATGGCCATGGCCGTGTAGAGTCACGCCAGTGCTA
TGTGCTCAACAGTGATGTTTTAGAAGGTAATTTCTCTCGTTGGACAGGGTTAAAAAACATCATCATGGTTGAGAGTTTCCGGTATAAAAAAGGAAAATCC
ATAGGGCTAGAATATCGCTATTACATTAGCTCGAAAACATTAACAGCAGAGCAAGCAGCTAATGCTGTTCGTGAGCATTGGGGCATAGAGTCGATGCACT
GGATACTTGACGTTAGTATGAATGAAGATGCCTGTCAGATATACAAAGATAACGGTGCGGAAAATCTATCCTGTCTACGTCACATGGCTCTGAATATGCT
TCGGGTTGAGCCAACGAAAGTGAGTATCGTCGGAAAACAAAAGCGTTGTTTAATGAATATATCAATGCTGGAAAACGTGTTGATTGCGGGGTTGTCTAAA
AACTAAACACTCATGCGGTTGCCCTG
TCGACAGCTTCAAAGAGCATTTTAAAATCATTGCTGATCAACGCCAAAGTGCGAAAGTTACTTACCCTCTGTTTGACGTTTTATTTGGTTCTCTTTGCGC
TGTGATCGCCGGTGCTAAAGGCTGGTTTGACATTCGAGAGTACATTCAAGGCCATCACCATTGGTTTCAAAAGAACGATATGTTCATGGTTGATATTCCT
GCTGACGATACTATTGCTCGGATCATATCAACGATAGAGCCGGTGCAGTTTCACGAATGTTTTTTGAACTGGATGCAATCAGTACATACTTTGACTGAAG
GTCAAGTGATCGCAATTGATGGTAAAACACTTCGCGGCTCATACAACCGAGAAGACCGAGCCAGCACAATCCATATGATAAGTGCTTACGCCTCTTCGAA
TAAACTGGTGCTTGGACAGATAAAAACCGACCAAAAGAGCAATGAAATTACCGCCATTCCTGAACTTTTAAAGATGCTAGACTTACGTGGTGCTCTAGTC
ACCATCGATGCGATGGCATGCCAAACAAAAATTGCCAAAGCCATAGTTAATCAAGACGGAGACTACTTGCTTGCGGTTAAAAACAACCAAGGTCAACTGC
GTAAAGCGGTAGAGAAAGCGTTTAGTCATCAAAGAGCTACGACAGCGCAAGACATAGAATTCGAGAATGGCCATGGCCGTGTAGAGTCACGCCAGTGCTA
TGTGCTCAACAGTGATGTTTTAGAAGGTAATTTCTCTCGTTGGACAGGGTTAAAAAACATCATCATGGTTGAGAGTTTCCGGTATAAAAAAGGAAAATCC
ATAGGGCTAGAATATCGCTATTACATTAGCTCGAAAACATTAACAGCAGAGCAAGCAGCTAATGCTGTTCGTGAGCATTGGGGCATAGAGTCGATGCACT
GGATACTTGACGTTAGTATGAATGAAGATGCCTGTCAGATATACAAAGATAACGGTGCGGAAAATCTATCCTGTCTACGTCACATGGCTCTGAATATGCT
TCGGGTTGAGCCAACGAAAGTGAGTATCGTCGGAAAACAAAAGCGTTGTTTAATGAATATATCAATGCTGGAAAACGTGTTGATTGCGGGGTTGTCTAAA
AACTAAACACTCATGCGGTTGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1113 bp | 370 aa | 94 | 1206 | + | No |
Chemistry : Unknow
ORF sequence :
MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQKNDMFMVDIPADDTIARIISTIEPVQFHECFLNWMQSVHTL
TEGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLKMLDLRGALVTIDAMACQTKIAKAIVNQDGDYLLAVKNNQG
QLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNSDVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIES
MHWILDVSMNEDACQIYKDNGAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLENVLIAGLSKN
TEGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLKMLDLRGALVTIDAMACQTKIAKAIVNQDGDYLLAVKNNQG
QLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNSDVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIES
MHWILDVSMNEDACQIYKDNGAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLENVLIAGLSKN
Blast result :
Comments
ISVsa13 is 91% aa similar to ISVha1.
References
1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.