ISVsa13

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011312 ND Aliivibrio salmonicida
Aliivibrio salmonicida LFI1238
DNA section
IS Length : 1226 bp

Ends


IR Length : 16/22

IRL : CAGGGCAAGATCGTGAACGTTTTTTAAACAAAAAAGATCGGTTTGACGAT
IRR : CAGGGCAACCGCATGAGTGTTTAGTTTTTAGACAACCCCGCAATCAACAC

Insertion site


Left flankDirect repeatRight flankDR Length
GTCTCAAAATGGATAAAAAGTGTCTCAGCT10

DNA sequence

CAGGGCAAGATCGTGAACGTTTTTTAAACAAAAAAGATCGGTTTGACGATCTCATTTACTTGTGATCTTATACTCCTTTTTTAGGGAGCCAGTATGCATA
TCGACAGCTTCAAAGAGCATTTTAAAATCATTGCTGATCAACGCCAAAGTGCGAAAGTTACTTACCCTCTGTTTGACGTTTTATTTGGTTCTCTTTGCGC
TGTGATCGCCGGTGCTAAAGGCTGGTTTGACATTCGAGAGTACATTCAAGGCCATCACCATTGGTTTCAAAAGAACGATATGTTCATGGTTGATATTCCT
GCTGACGATACTATTGCTCGGATCATATCAACGATAGAGCCGGTGCAGTTTCACGAATGTTTTTTGAACTGGATGCAATCAGTACATACTTTGACTGAAG
GTCAAGTGATCGCAATTGATGGTAAAACACTTCGCGGCTCATACAACCGAGAAGACCGAGCCAGCACAATCCATATGATAAGTGCTTACGCCTCTTCGAA
TAAACTGGTGCTTGGACAGATAAAAACCGACCAAAAGAGCAATGAAATTACCGCCATTCCTGAACTTTTAAAGATGCTAGACTTACGTGGTGCTCTAGTC
ACCATCGATGCGATGGCATGCCAAACAAAAATTGCCAAAGCCATAGTTAATCAAGACGGAGACTACTTGCTTGCGGTTAAAAACAACCAAGGTCAACTGC
GTAAAGCGGTAGAGAAAGCGTTTAGTCATCAAAGAGCTACGACAGCGCAAGACATAGAATTCGAGAATGGCCATGGCCGTGTAGAGTCACGCCAGTGCTA
TGTGCTCAACAGTGATGTTTTAGAAGGTAATTTCTCTCGTTGGACAGGGTTAAAAAACATCATCATGGTTGAGAGTTTCCGGTATAAAAAAGGAAAATCC
ATAGGGCTAGAATATCGCTATTACATTAGCTCGAAAACATTAACAGCAGAGCAAGCAGCTAATGCTGTTCGTGAGCATTGGGGCATAGAGTCGATGCACT
GGATACTTGACGTTAGTATGAATGAAGATGCCTGTCAGATATACAAAGATAACGGTGCGGAAAATCTATCCTGTCTACGTCACATGGCTCTGAATATGCT
TCGGGTTGAGCCAACGAAAGTGAGTATCGTCGGAAAACAAAAGCGTTGTTTAATGAATATATCAATGCTGGAAAACGTGTTGATTGCGGGGTTGTCTAAA
AACTAAACACTCATGCGGTTGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1113 bp370 aa941206+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MHIDSFKEHFKIIADQRQSAKVTYPLFDVLFGSLCAVIAGAKGWFDIREYIQGHHHWFQKNDMFMVDIPADDTIARIISTIEPVQFHECFLNWMQSVHTL
TEGQVIAIDGKTLRGSYNREDRASTIHMISAYASSNKLVLGQIKTDQKSNEITAIPELLKMLDLRGALVTIDAMACQTKIAKAIVNQDGDYLLAVKNNQG
QLRKAVEKAFSHQRATTAQDIEFENGHGRVESRQCYVLNSDVLEGNFSRWTGLKNIIMVESFRYKKGKSIGLEYRYYISSKTLTAEQAANAVREHWGIES
MHWILDVSMNEDACQIYKDNGAENLSCLRHMALNMLRVEPTKVSIVGKQKRCLMNISMLENVLIAGLSKN

 

Blast result :
Comments
ISVsa13 is 91% aa similar to ISVha1.
References
1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.