ISGob5

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABGO01000003 ND Gemmata obscuriglobus
Gemmata obscuriglobus UQM 2246
DNA section
IS Length : 1308 bp

Ends


IR Length : 21

IRL : CAGGGCAAACGCACTCAATCCCCTAGGAATCGCTGGATTCTAGCTAATTT
IRR : CAGGGCAAACGCACTCAATCCTCGGGATTTTTCAGTAGTACCTGTTCGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCAAGATCGACTACACGAACACGGTCACGTTCGG10

DNA sequence

CAGGGCAAACGCACTCAATCCCCTAGGAATCGCTGGATTCTAGCTAATTTTGAGGCGTGTGATCGAGCGGCCATCGCTCGCCTCCTGCGCATGTGCGGCC
CCGCCTCCATATGATTCTGGCGCGCCCTCACCGCCTCGGAGTCTGCCGATGAGTGCCGCCCCCGGCCCACGCCCGTTAATCGAGTACCTGTCCCAGATCC
CGGATCCGCGGGTCGAGTTGAAGTGCTTCCACGACTTGATTGATGTACTCATGATCGTGACCTGTGGGACGATCGTCGGGGCCGATGACTTCGTGTCGAT
CGCCGAGTTCGCGCGGGCCAAGGAGTCCTGGTTCCGGGACCGGCTGGGGCTGACGCTGCGCAACGGGATTCCGTCCCACGACACCCTCAACCGGGTGTTC
GCGCTGGTCCGCCCGGAGGCGTTCGGGCGGTGCTTCCGGGCGTGGGTCGCGGACGCCGCCGAGGGCCTCCGGGTGCCCCACATCCCGATCGACGGGAAGA
CCATGCGGGGGTCCAAGCGGGTCACCGGCACGGGGGCTCGCAAGGCCACACACATCGTCAGCGCATGGGCTCAGCAGTTGGGCCTCACGTTGGCCCAGGT
GAAGACCGACGAGAAGTCCAACGAGATCACCGCGATCCCGGAACTGCTGGAGCGGCTGGACCTCGCGGGGGCCCTGGTGAGCATCGACGCGATGGGCACC
CAGAAGGACATCGCCCAGCAGATCGTGGCCGCCAAGGGGGACTACCTGCTGGCGGTCAAGGACAACCAGCCGCGGCTGCTCGAGGACATCCAGCGGTTGG
CCGAGGGGGCCCTAGAGGCGAGCTACGCGGGCCGCTCGACCGACCTCAACGAAGGAACGGGCCACGGGCGCGAGGAGATGCGGTTCTGCTTCGTGATCGA
CGACCTGGAGTCGATCCGGGACCGGAATGTGTGGCCCCGGTTGCGGTCCGTCGTGGTGCTCGTCAGCAGCCGCACGGTCGCCGGTAGGACGAGCGACGAG
GTGCGGTATTACATCAGCTCGCGGAAGGCATCGGCCAAGCGGTTCCAAACGTGGATCCGGGCTCATTGGTGCATCGAGAATTCATGCCATTGGGTGCTGG
ATGTCGCGTTCCGAGAAGACGACCACCGACTCCGTGAAGGGCACGGCCCGCAGAATATGGCCCTCGTGCGCAAGATCGCCTTGGCGATGTTGAAGAAGGC
AAACGCCAAATGTGGGATCAAGAACCGGCGACTCAAGGCCGGATGGGATAATACCTACCTCGAACAGGTACTACTGAAAAATCCCGAGGATTGAGTGCGT
TTGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1146 bp381 aa1491294+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSAAPGPRPLIEYLSQIPDPRVELKCFHDLIDVLMIVTCGTIVGADDFVSIAEFARAKESWFRDRLGLTLRNGIPSHDTLNRVFALVRPEAFGRCFRAWV
ADAAEGLRVPHIPIDGKTMRGSKRVTGTGARKATHIVSAWAQQLGLTLAQVKTDEKSNEITAIPELLERLDLAGALVSIDAMGTQKDIAQQIVAAKGDYL
LAVKDNQPRLLEDIQRLAEGALEASYAGRSTDLNEGTGHGREEMRFCFVIDDLESIRDRNVWPRLRSVVVLVSSRTVAGRTSDEVRYYISSRKASAKRFQ
TWIRAHWCIENSCHWVLDVAFREDDHRLREGHGPQNMALVRKIALAMLKKANAKCGIKNRRLKAGWDNTYLEQVLLKNPED

 

Blast result :
Comments
ISGob5 is 60% aa similar to ISUnCu11.
References
1] ISfinder annotation (2009)
2] Ward,N.(2007) Direct submission GenBank.