ISVsp18
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ01000001 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1241 bp
Ends
IR Length : 17
IRL : CAGGGCTTACGCATCTAGTTTTTACAAAGCACGTGGAAATTAGTTAAGAT
IRR : CAGGGCTTACGCATCTAAATTTACTCCAAGCAAGGTTTGGAGATAGTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGCATAAAGC | GTCCGTTCAG | TTTACGCCATC | 10 |
DNA sequence
CAGGGCTTACGCATCTAGTTTTTACAAAGCACGTGGAAATTAGTTAAGATGTGTGAATGAAGTGGGGCATGTCTTCCGCCTCTGCATCTCCTGACAGCAA
CCTTCGTGAAGTTTTTCAGAGCATTGATGACTGGAGGGTGCAGCGTACCCAGCGACATGATCTGGCCGACATCCTGGTGATTGCCACCTGCGCCATGCTG
TGCGGTCAGGGGCATTACACCCATATGGAAGCCTTCGGCAATCTGAAGCGCACTTGGTTGGAGAGCTTTCTTGCCCTGCCCAACGGCATTCCCAGTCACG
ACACGTTCCGTAAAGTCTTCAGCCTGCTTGATCCCAAGCGCTTCATGGAAGCCTTCAGTCTCTGGACCCAAGGTGTATTGCGCCAACTCTCCAGCGAGGG
GCTTGAGAGCGGTCTCAAAGGGGTGATCGCCATTGATGGAAAGGCACTGCGCGGGGCCGTCGACAAAGGGCAGGCACCTGCGGTCATCGTGGGGGCTTGG
GCCAGTGAATTGAGCCTGTGCCTTGGACAGGTCAAGGTTGCTGACAAGAGCAATGAGATTGGCGCGATGCCGGAGTTGTTGGAAATGCTGGCGTTGAAAG
GCTGCATCGTGACCATCGACGCCATGGGCTGCCAGAGGGAGGTGGCCAGGAAAATCATCCAGCAAAAGGGGGACTACATCCTGGCCCTCAAAAGCAACCA
GGAAAGCCTCCATCAACAGGTCAGCCACTATTTGGACACGGGGGAGGACCTGGCCAGGGCAGAAGGCAACTTTCATCAAGAGGAAAGCGATGGGCACGGC
CGGCATGAAGTGCGTCGCTGTTGGGTGAGTGAGGAAGTGGAATGCTGGCTGCAGGGGGCAGAAAAGTGGGCGGGACTGCGCAGCGTGGCTGCGGTGGAAT
GCGAGCGCACCGTGGCGGGTCAGACCACGGTGCAAAGGCGTTACTTCATCAGCAGTTTGAAAGCCGATGCCGCGCTCATTGCAGCCTCAGTACGCGCTCA
CTGGGGGATTGAAAACTCGCTGCACTGGGTTCTAGATGTGACCTTTGGCGAAGATGAGAGCCGGTCTAGAAGAGGTTACAGCGCGGAGAATCTGGCCACC
CTTCGACGCCTGACTCATGCAATGATCAAGCGAGAGAACCCAAACTCCAAAAAATCGGTCAACCAACGCAGATTCGAAGCCGGACTCAGTACAGACTATC
TCCAAACCTTGCTTGGAGTAAATTTAGATGCGTAAGCCCTG
CCTTCGTGAAGTTTTTCAGAGCATTGATGACTGGAGGGTGCAGCGTACCCAGCGACATGATCTGGCCGACATCCTGGTGATTGCCACCTGCGCCATGCTG
TGCGGTCAGGGGCATTACACCCATATGGAAGCCTTCGGCAATCTGAAGCGCACTTGGTTGGAGAGCTTTCTTGCCCTGCCCAACGGCATTCCCAGTCACG
ACACGTTCCGTAAAGTCTTCAGCCTGCTTGATCCCAAGCGCTTCATGGAAGCCTTCAGTCTCTGGACCCAAGGTGTATTGCGCCAACTCTCCAGCGAGGG
GCTTGAGAGCGGTCTCAAAGGGGTGATCGCCATTGATGGAAAGGCACTGCGCGGGGCCGTCGACAAAGGGCAGGCACCTGCGGTCATCGTGGGGGCTTGG
GCCAGTGAATTGAGCCTGTGCCTTGGACAGGTCAAGGTTGCTGACAAGAGCAATGAGATTGGCGCGATGCCGGAGTTGTTGGAAATGCTGGCGTTGAAAG
GCTGCATCGTGACCATCGACGCCATGGGCTGCCAGAGGGAGGTGGCCAGGAAAATCATCCAGCAAAAGGGGGACTACATCCTGGCCCTCAAAAGCAACCA
GGAAAGCCTCCATCAACAGGTCAGCCACTATTTGGACACGGGGGAGGACCTGGCCAGGGCAGAAGGCAACTTTCATCAAGAGGAAAGCGATGGGCACGGC
CGGCATGAAGTGCGTCGCTGTTGGGTGAGTGAGGAAGTGGAATGCTGGCTGCAGGGGGCAGAAAAGTGGGCGGGACTGCGCAGCGTGGCTGCGGTGGAAT
GCGAGCGCACCGTGGCGGGTCAGACCACGGTGCAAAGGCGTTACTTCATCAGCAGTTTGAAAGCCGATGCCGCGCTCATTGCAGCCTCAGTACGCGCTCA
CTGGGGGATTGAAAACTCGCTGCACTGGGTTCTAGATGTGACCTTTGGCGAAGATGAGAGCCGGTCTAGAAGAGGTTACAGCGCGGAGAATCTGGCCACC
CTTCGACGCCTGACTCATGCAATGATCAAGCGAGAGAACCCAAACTCCAAAAAATCGGTCAACCAACGCAGATTCGAAGCCGGACTCAGTACAGACTATC
TCCAAACCTTGCTTGGAGTAAATTTAGATGCGTAAGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 57 | 1235 | + | No |
Chemistry : Unknow
ORF sequence :
MKWGMSSASASPDSNLREVFQSIDDWRVQRTQRHDLADILVIATCAMLCGQGHYTHMEAFGNLKRTWLESFLALPNGIPSHDTFRKVFSLLDPKRFMEAF
SLWTQGVLRQLSSEGLESGLKGVIAIDGKALRGAVDKGQAPAVIVGAWASELSLCLGQVKVADKSNEIGAMPELLEMLALKGCIVTIDAMGCQREVARKI
IQQKGDYILALKSNQESLHQQVSHYLDTGEDLARAEGNFHQEESDGHGRHEVRRCWVSEEVECWLQGAEKWAGLRSVAAVECERTVAGQTTVQRRYFISS
LKADAALIAASVRAHWGIENSLHWVLDVTFGEDESRSRRGYSAENLATLRRLTHAMIKRENPNSKKSVNQRRFEAGLSTDYLQTLLGVNLDA
SLWTQGVLRQLSSEGLESGLKGVIAIDGKALRGAVDKGQAPAVIVGAWASELSLCLGQVKVADKSNEIGAMPELLEMLALKGCIVTIDAMGCQREVARKI
IQQKGDYILALKSNQESLHQQVSHYLDTGEDLARAEGNFHQEESDGHGRHEVRRCWVSEEVECWLQGAEKWAGLRSVAAVECERTVAGQTTVQRRYFISS
LKADAALIAASVRAHWGIENSLHWVLDVTFGEDESRSRRGYSAENLATLRRLTHAMIKRENPNSKKSVNQRRFEAGLSTDYLQTLLGVNLDA
Blast result :
Comments
ISVsp18 is 64% aa similar to ISVer2.
References
1] ISfinder annotation
2] Ward,N.L., Wu,M., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn-Giglio,M., Kothari,S.P., Madupu,R., Nelson,W.C., Rosovitz,M.J., Shrivastava,S., Sullivan,S., Haft,D.H., Selengut,J.D., Creasy,T., Zafar,N., Davidsen,T.M., Yang,Q., Ganapaty,A., Dimitrov,G., Sosa,J., Toms,B. and Khouri,H. ( 2007) Direct submission GenBank
2] Ward,N.L., Wu,M., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn-Giglio,M., Kothari,S.P., Madupu,R., Nelson,W.C., Rosovitz,M.J., Shrivastava,S., Sullivan,S., Haft,D.H., Selengut,J.D., Creasy,T., Zafar,N., Davidsen,T.M., Yang,Q., Ganapaty,A., Dimitrov,G., Sosa,J., Toms,B. and Khouri,H. ( 2007) Direct submission GenBank