ISVsp18

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ01000001 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1241 bp

Ends


IR Length : 17

IRL : CAGGGCTTACGCATCTAGTTTTTACAAAGCACGTGGAAATTAGTTAAGAT
IRR : CAGGGCTTACGCATCTAAATTTACTCCAAGCAAGGTTTGGAGATAGTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGCATAAAGCGTCCGTTCAGTTTACGCCATC10

DNA sequence

CAGGGCTTACGCATCTAGTTTTTACAAAGCACGTGGAAATTAGTTAAGATGTGTGAATGAAGTGGGGCATGTCTTCCGCCTCTGCATCTCCTGACAGCAA
CCTTCGTGAAGTTTTTCAGAGCATTGATGACTGGAGGGTGCAGCGTACCCAGCGACATGATCTGGCCGACATCCTGGTGATTGCCACCTGCGCCATGCTG
TGCGGTCAGGGGCATTACACCCATATGGAAGCCTTCGGCAATCTGAAGCGCACTTGGTTGGAGAGCTTTCTTGCCCTGCCCAACGGCATTCCCAGTCACG
ACACGTTCCGTAAAGTCTTCAGCCTGCTTGATCCCAAGCGCTTCATGGAAGCCTTCAGTCTCTGGACCCAAGGTGTATTGCGCCAACTCTCCAGCGAGGG
GCTTGAGAGCGGTCTCAAAGGGGTGATCGCCATTGATGGAAAGGCACTGCGCGGGGCCGTCGACAAAGGGCAGGCACCTGCGGTCATCGTGGGGGCTTGG
GCCAGTGAATTGAGCCTGTGCCTTGGACAGGTCAAGGTTGCTGACAAGAGCAATGAGATTGGCGCGATGCCGGAGTTGTTGGAAATGCTGGCGTTGAAAG
GCTGCATCGTGACCATCGACGCCATGGGCTGCCAGAGGGAGGTGGCCAGGAAAATCATCCAGCAAAAGGGGGACTACATCCTGGCCCTCAAAAGCAACCA
GGAAAGCCTCCATCAACAGGTCAGCCACTATTTGGACACGGGGGAGGACCTGGCCAGGGCAGAAGGCAACTTTCATCAAGAGGAAAGCGATGGGCACGGC
CGGCATGAAGTGCGTCGCTGTTGGGTGAGTGAGGAAGTGGAATGCTGGCTGCAGGGGGCAGAAAAGTGGGCGGGACTGCGCAGCGTGGCTGCGGTGGAAT
GCGAGCGCACCGTGGCGGGTCAGACCACGGTGCAAAGGCGTTACTTCATCAGCAGTTTGAAAGCCGATGCCGCGCTCATTGCAGCCTCAGTACGCGCTCA
CTGGGGGATTGAAAACTCGCTGCACTGGGTTCTAGATGTGACCTTTGGCGAAGATGAGAGCCGGTCTAGAAGAGGTTACAGCGCGGAGAATCTGGCCACC
CTTCGACGCCTGACTCATGCAATGATCAAGCGAGAGAACCCAAACTCCAAAAAATCGGTCAACCAACGCAGATTCGAAGCCGGACTCAGTACAGACTATC
TCCAAACCTTGCTTGGAGTAAATTTAGATGCGTAAGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa571235+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKWGMSSASASPDSNLREVFQSIDDWRVQRTQRHDLADILVIATCAMLCGQGHYTHMEAFGNLKRTWLESFLALPNGIPSHDTFRKVFSLLDPKRFMEAF
SLWTQGVLRQLSSEGLESGLKGVIAIDGKALRGAVDKGQAPAVIVGAWASELSLCLGQVKVADKSNEIGAMPELLEMLALKGCIVTIDAMGCQREVARKI
IQQKGDYILALKSNQESLHQQVSHYLDTGEDLARAEGNFHQEESDGHGRHEVRRCWVSEEVECWLQGAEKWAGLRSVAAVECERTVAGQTTVQRRYFISS
LKADAALIAASVRAHWGIENSLHWVLDVTFGEDESRSRRGYSAENLATLRRLTHAMIKRENPNSKKSVNQRRFEAGLSTDYLQTLLGVNLDA

 

Blast result :
Comments
ISVsp18 is 64% aa similar to ISVer2.
References
1] ISfinder annotation
2] Ward,N.L., Wu,M., Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn-Giglio,M., Kothari,S.P., Madupu,R., Nelson,W.C., Rosovitz,M.J., Shrivastava,S., Sullivan,S., Haft,D.H., Selengut,J.D., Creasy,T., Zafar,N., Davidsen,T.M., Yang,Q., Ganapaty,A., Dimitrov,G., Sosa,J., Toms,B. and Khouri,H. ( 2007) Direct submission GenBank