ISCysp6
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010546 | ND | Cyanothece sp. | Cyanothece sp. ATCC 51142 chromosome circular Cyanothece sp. ATCC 51142 chromosome linear |
DNA section
IS Length : 1360 bp
Ends
IR Length : 21
IRL : CAGGGTAAGCTCATCTAAAATGGTATAAAATGTACTTGACTAAGAAAGTA
IRR : CAGGGTAAGCTCATCTAAAATCCGCTTGACAGAAGGAATTGAGAACAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAGGACTGCCTGATCTGGGTTTTTTAAC | GTAAAAAACATCAAGAAGCCGGTGCTGATA | 0 | |
TTTGACTAAAGAAGAAATGCGACAAATGTT | ATAAAAAAGTGGCTAAAAAATTAATGCCAC | 0 | |
GTATTTATGTTGATCATATGCACCAGCAAC | CTTAATATCTCCTTATAAATTATCTGCCAT | 0 | |
TTTTTTGCTCATTATTTTTAAACTCTTTTG | GATAGTATAGAGCAAGAATTCTTCAAGAAA | 0 | |
GACCGAAACATAGAAAAGGTGATAGTATAG | TATGAAGATGTAAGTTTCTAAAATCACCTC | 0 | |
TAAATTAAGAGAATAACCTAATTGTATTGC | GATTTCTTCGGGGGGTGCGGATTCAAGATT | 0 | |
AATTCTGTAAGTATTAAGTG | AAGTCTGTAG | CGAGTCGCTTTCAGTTATTG | 10 |
DNA sequence
CAGGGTAAGCTCATCTAAAATGGTATAAAATGTACTTGACTAAGAAAGTAAAGTCTAGGTGAGGCAAAAAGGGACTTAAAATAAAAAAACAAAGTACAAT
TAGGACTTTCGTAATTATGGAATCAGAACATGGCCAAGGGGTTTGCAGACCAAAAACAATCTAGTAAGAAAAAAAAGGAAAAGGGAAATATAGCATCTAT
TGATGAAATCCAAAACAATTTATTAGGCTATGTCAAAGAAATAGAAGATCCTAGAGTACAAAGAAGCAAAAAACACCTCCTTAAAGATGTATTGGCGATC
GCTATATTGGCAGTCATTGCAGGGTCCCAAGGTTGGGAAGATATGGAGAACTATGGTATCGCAAAACAGGAGTGGTTATCAGAGTTTCTAGAACTCCCTC
ACGGAATCCCGAGTGATGACACATTTAGAAGAGTTTTTGAGAGAATTGATCCAGAATCGCTGCAAAAATGCCTACAAAAATGGGTTCAATCTATAATGAA
TTCAATTCAAGGAGAAATTATCCCCATCGATGGCAAAACATTAAGGGGTTCTTACGATCGCAACGCCGGACAGTGCGCTTTACATACGGTCACAGCGTGG
GCATCCCAGCAGAGTCTGGTGTTAGGACAAGTCAAAGTTGAAAACTACTCCAATGAAATTACGGCCATTCCTGCCTTACTCGAACTATTAGACATTACAG
GCTCGATCATTACCATTGATGCAATGGGAACTCAAACCAGCATTATCCAACAAATTTGTCGGCAAAAAGCTGACTACATTGTTACTCTCAAAGCTAACCA
TCCTACTTTATTTTCTCAAGTCAAGCAATGGTTTACTGATACCCAAAACAATGGCTGGGATGGCATTGAACATGATTACTACAAAAGTGTAACCAAGGGC
CACCACCGCACCGAGAAACGATACGTTTGGGCTATACCAGTAGCAGCTATGGGAGAGCTTTACCAGCAACAACAATGGCATGGACTGCAAACTATTGTCG
TAGTCGAACGCATCCGTCACTTGTGGAACAAGACTACCCACGATATTCAGTTTTATCTGACCTCTTTACCTCCCAATGCCCAATTCCTTTGCCATGCGAT
CCGCACCCATTGGAGCATTGAGAATAACCTTCATTGGACACTCGATGTCACTTTTTCTGAAGATCAATGCCGTATTCGGTCAGAATATAGTCCACAGAAC
TTTGCTCTTCTAAGACGATTGGCTCTTAATGTTCTCCATCAAGAAAAAACATTTAAACGTAGTCTTCGCCAGAAAATGAAGCAAGCTGCTATGAACAACA
ACTATATGATGACTGTTCTCAATTCCTTCTGTCAAGCGGATTTTAGATGAGCTTACCCTG
TAGGACTTTCGTAATTATGGAATCAGAACATGGCCAAGGGGTTTGCAGACCAAAAACAATCTAGTAAGAAAAAAAAGGAAAAGGGAAATATAGCATCTAT
TGATGAAATCCAAAACAATTTATTAGGCTATGTCAAAGAAATAGAAGATCCTAGAGTACAAAGAAGCAAAAAACACCTCCTTAAAGATGTATTGGCGATC
GCTATATTGGCAGTCATTGCAGGGTCCCAAGGTTGGGAAGATATGGAGAACTATGGTATCGCAAAACAGGAGTGGTTATCAGAGTTTCTAGAACTCCCTC
ACGGAATCCCGAGTGATGACACATTTAGAAGAGTTTTTGAGAGAATTGATCCAGAATCGCTGCAAAAATGCCTACAAAAATGGGTTCAATCTATAATGAA
TTCAATTCAAGGAGAAATTATCCCCATCGATGGCAAAACATTAAGGGGTTCTTACGATCGCAACGCCGGACAGTGCGCTTTACATACGGTCACAGCGTGG
GCATCCCAGCAGAGTCTGGTGTTAGGACAAGTCAAAGTTGAAAACTACTCCAATGAAATTACGGCCATTCCTGCCTTACTCGAACTATTAGACATTACAG
GCTCGATCATTACCATTGATGCAATGGGAACTCAAACCAGCATTATCCAACAAATTTGTCGGCAAAAAGCTGACTACATTGTTACTCTCAAAGCTAACCA
TCCTACTTTATTTTCTCAAGTCAAGCAATGGTTTACTGATACCCAAAACAATGGCTGGGATGGCATTGAACATGATTACTACAAAAGTGTAACCAAGGGC
CACCACCGCACCGAGAAACGATACGTTTGGGCTATACCAGTAGCAGCTATGGGAGAGCTTTACCAGCAACAACAATGGCATGGACTGCAAACTATTGTCG
TAGTCGAACGCATCCGTCACTTGTGGAACAAGACTACCCACGATATTCAGTTTTATCTGACCTCTTTACCTCCCAATGCCCAATTCCTTTGCCATGCGAT
CCGCACCCATTGGAGCATTGAGAATAACCTTCATTGGACACTCGATGTCACTTTTTCTGAAGATCAATGCCGTATTCGGTCAGAATATAGTCCACAGAAC
TTTGCTCTTCTAAGACGATTGGCTCTTAATGTTCTCCATCAAGAAAAAACATTTAAACGTAGTCTTCGCCAGAAAATGAAGCAAGCTGCTATGAACAACA
ACTATATGATGACTGTTCTCAATTCCTTCTGTCAAGCGGATTTTAGATGAGCTTACCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 130 | 1350 | + | No |
Chemistry : Unknow
ORF sequence :
MAKGFADQKQSSKKKKEKGNIASIDEIQNNLLGYVKEIEDPRVQRSKKHLLKDVLAIAILAVIAGSQGWEDMENYGIAKQEWLSEFLELPHGIPSDDTFR
RVFERIDPESLQKCLQKWVQSIMNSIQGEIIPIDGKTLRGSYDRNAGQCALHTVTAWASQQSLVLGQVKVENYSNEITAIPALLELLDITGSIITIDAMG
TQTSIIQQICRQKADYIVTLKANHPTLFSQVKQWFTDTQNNGWDGIEHDYYKSVTKGHHRTEKRYVWAIPVAAMGELYQQQQWHGLQTIVVVERIRHLWN
KTTHDIQFYLTSLPPNAQFLCHAIRTHWSIENNLHWTLDVTFSEDQCRIRSEYSPQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNSF
CQADFR
RVFERIDPESLQKCLQKWVQSIMNSIQGEIIPIDGKTLRGSYDRNAGQCALHTVTAWASQQSLVLGQVKVENYSNEITAIPALLELLDITGSIITIDAMG
TQTSIIQQICRQKADYIVTLKANHPTLFSQVKQWFTDTQNNGWDGIEHDYYKSVTKGHHRTEKRYVWAIPVAAMGELYQQQQWHGLQTIVVVERIRHLWN
KTTHDIQFYLTSLPPNAQFLCHAIRTHWSIENNLHWTLDVTFSEDQCRIRSEYSPQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNSF
CQADFR
Blast result :
Comments
ISCysp6 is 96% aa similar to ISCysp2.
References
1] ISfinder annotation (2009)
2] Welsh,E.A., Liberton,M., Stockel,J., Loh,T., Elvitigala,T., Wang,C., Wollam,A., Fulton,R.S., Clifton,S.W., Jacobs,J.M., Aurora,R., Ghosh,B.K., Sherman,L.A., Smith,R.D., Wilson,R.K. and Pakrasi,H.B. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (39), 15094-15099
2] Welsh,E.A., Liberton,M., Stockel,J., Loh,T., Elvitigala,T., Wang,C., Wollam,A., Fulton,R.S., Clifton,S.W., Jacobs,J.M., Aurora,R., Ghosh,B.K., Sherman,L.A., Smith,R.D., Wilson,R.K. and Pakrasi,H.B. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (39), 15094-15099