ISCysp6

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010546 ND Cyanothece sp.
Cyanothece sp. ATCC 51142 chromosome circular
Cyanothece sp. ATCC 51142 chromosome linear
DNA section
IS Length : 1360 bp

Ends


IR Length : 21

IRL : CAGGGTAAGCTCATCTAAAATGGTATAAAATGTACTTGACTAAGAAAGTA
IRR : CAGGGTAAGCTCATCTAAAATCCGCTTGACAGAAGGAATTGAGAACAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAGGACTGCCTGATCTGGGTTTTTTAACGTAAAAAACATCAAGAAGCCGGTGCTGATA0
TTTGACTAAAGAAGAAATGCGACAAATGTTATAAAAAAGTGGCTAAAAAATTAATGCCAC0
GTATTTATGTTGATCATATGCACCAGCAACCTTAATATCTCCTTATAAATTATCTGCCAT0
TTTTTTGCTCATTATTTTTAAACTCTTTTGGATAGTATAGAGCAAGAATTCTTCAAGAAA0
GACCGAAACATAGAAAAGGTGATAGTATAGTATGAAGATGTAAGTTTCTAAAATCACCTC0
TAAATTAAGAGAATAACCTAATTGTATTGCGATTTCTTCGGGGGGTGCGGATTCAAGATT0
AATTCTGTAAGTATTAAGTGAAGTCTGTAGCGAGTCGCTTTCAGTTATTG10

DNA sequence

CAGGGTAAGCTCATCTAAAATGGTATAAAATGTACTTGACTAAGAAAGTAAAGTCTAGGTGAGGCAAAAAGGGACTTAAAATAAAAAAACAAAGTACAAT
TAGGACTTTCGTAATTATGGAATCAGAACATGGCCAAGGGGTTTGCAGACCAAAAACAATCTAGTAAGAAAAAAAAGGAAAAGGGAAATATAGCATCTAT
TGATGAAATCCAAAACAATTTATTAGGCTATGTCAAAGAAATAGAAGATCCTAGAGTACAAAGAAGCAAAAAACACCTCCTTAAAGATGTATTGGCGATC
GCTATATTGGCAGTCATTGCAGGGTCCCAAGGTTGGGAAGATATGGAGAACTATGGTATCGCAAAACAGGAGTGGTTATCAGAGTTTCTAGAACTCCCTC
ACGGAATCCCGAGTGATGACACATTTAGAAGAGTTTTTGAGAGAATTGATCCAGAATCGCTGCAAAAATGCCTACAAAAATGGGTTCAATCTATAATGAA
TTCAATTCAAGGAGAAATTATCCCCATCGATGGCAAAACATTAAGGGGTTCTTACGATCGCAACGCCGGACAGTGCGCTTTACATACGGTCACAGCGTGG
GCATCCCAGCAGAGTCTGGTGTTAGGACAAGTCAAAGTTGAAAACTACTCCAATGAAATTACGGCCATTCCTGCCTTACTCGAACTATTAGACATTACAG
GCTCGATCATTACCATTGATGCAATGGGAACTCAAACCAGCATTATCCAACAAATTTGTCGGCAAAAAGCTGACTACATTGTTACTCTCAAAGCTAACCA
TCCTACTTTATTTTCTCAAGTCAAGCAATGGTTTACTGATACCCAAAACAATGGCTGGGATGGCATTGAACATGATTACTACAAAAGTGTAACCAAGGGC
CACCACCGCACCGAGAAACGATACGTTTGGGCTATACCAGTAGCAGCTATGGGAGAGCTTTACCAGCAACAACAATGGCATGGACTGCAAACTATTGTCG
TAGTCGAACGCATCCGTCACTTGTGGAACAAGACTACCCACGATATTCAGTTTTATCTGACCTCTTTACCTCCCAATGCCCAATTCCTTTGCCATGCGAT
CCGCACCCATTGGAGCATTGAGAATAACCTTCATTGGACACTCGATGTCACTTTTTCTGAAGATCAATGCCGTATTCGGTCAGAATATAGTCCACAGAAC
TTTGCTCTTCTAAGACGATTGGCTCTTAATGTTCTCCATCAAGAAAAAACATTTAAACGTAGTCTTCGCCAGAAAATGAAGCAAGCTGCTATGAACAACA
ACTATATGATGACTGTTCTCAATTCCTTCTGTCAAGCGGATTTTAGATGAGCTTACCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa1301350+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAKGFADQKQSSKKKKEKGNIASIDEIQNNLLGYVKEIEDPRVQRSKKHLLKDVLAIAILAVIAGSQGWEDMENYGIAKQEWLSEFLELPHGIPSDDTFR
RVFERIDPESLQKCLQKWVQSIMNSIQGEIIPIDGKTLRGSYDRNAGQCALHTVTAWASQQSLVLGQVKVENYSNEITAIPALLELLDITGSIITIDAMG
TQTSIIQQICRQKADYIVTLKANHPTLFSQVKQWFTDTQNNGWDGIEHDYYKSVTKGHHRTEKRYVWAIPVAAMGELYQQQQWHGLQTIVVVERIRHLWN
KTTHDIQFYLTSLPPNAQFLCHAIRTHWSIENNLHWTLDVTFSEDQCRIRSEYSPQNFALLRRLALNVLHQEKTFKRSLRQKMKQAAMNNNYMMTVLNSF
CQADFR

 

Blast result :
Comments
ISCysp6 is 96% aa similar to ISCysp2.
References
1] ISfinder annotation (2009)
2] Welsh,E.A., Liberton,M., Stockel,J., Loh,T., Elvitigala,T., Wang,C., Wollam,A., Fulton,R.S., Clifton,S.W., Jacobs,J.M., Aurora,R., Ghosh,B.K., Sherman,L.A., Smith,R.D., Wilson,R.K. and Pakrasi,H.B. (2008) Proc. Natl. Acad. Sci. U.S.A. 105 (39), 15094-15099