ISfinder Mirror Site

ISCysp5

Family ISAs1
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_011884	ND	Cyanothece sp.	Cyanothece sp. PCC 7425

DNA section

IS Length : 1262 bp

Ends

IR Length : 21/25

IRL : CAGGGCAAACGCATCTAAACGGGAGCGGATAAGGGTGTAGGATCGGGGAT
IRR : CAGGGTAAACGCATCAAAATAGGAGGTCAAACTATGCCTCATCAAGTAGT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GCAACCCAATGATT	CTACGCCAGT	CAATCTCTGGATGG	10

DNA sequence

CAGGGCAAACGCATCTAAACGGGAGCGGATAAGGGTGTAGGATCGGGGATTTACCCCCTCCGCCATGCCTCCCACCGTTAACCGAGAAAGCTTATCAGCC
TGTCTGGAGCAATACTTTGGTGAGATTACTGACCCCAGAGTCGAGCGAACCCGCGCTCATCAACTGCTCGATATCATTGCAATTGCCTTGTTTGCTGTGC
TGGCGGGAGCCGACAGTTGGGTAGGCATCGAAACCTACGGTCAGGCTAAACGCGCTTGGTTGGAAACCTTCCTGGCTCTACCGAATGGAATTCCCTCCCA
CGATACCTTCGCCCGTGTGTTTGCTCGTCTTGACCCGGAAGCGTTGGAGACCCGTTTCCAGCATTGGGTCAAAGGGGTGGTATCCACGCTAGGGGCACAA
GTGATTGCAATTGATGGCAAAACAGCTAAAGGTTCTTATGACCGCGAAGGCGGTGTCAAAGCCTTGCAACTGGTGAGTGCCTGGGCGAGTGAGCATCGCT
TAGTGCTAGGACAATGCGCGGTGGACACCAAGTCGAATGAAATCACAGCGATCCCTGTGTTATTGGAGCAGCTGGCCTTAGCAGGGTGTATCGTCAGTAT
CGACGCGATGGGAACCCATCAGACCATTGCAGCGCAGATCCACAAGCAGCAAGCTGACTATATTCTCGCCCTCAAAGGCAATCAACCCACGCTATTTAAG
CAAGCTCAGCAGTGGTTTGAGGAGTTTCAGACGGGGTCCAACGCAGGAGCGGAGTACACGCAGCATCAACAGTGTGAGACGGCCCATCATCGCATTGAGT
CGAGGCGCGTGTTTCAGGTTCCGGTTGAGCAAGTGTTTACCCCCAAGCAGGGTAGGGATTGGGCTGGGTTACGAAGTCTGGTGGTGATTCAATCCCAGCG
TTGCCTCTGGAACAAAGACACGACTGAAACCCGTTACTTTCTCAGTTCGCTTTCGACGGATGCCGCCACCTTTGCTCACTACATTCGCGCTCATTGGGGG
ATTGAAAACCAACTCCACTGGTGTTTAGATGTTGTTTTTAATGAAGATAAATCCCGCATTCGTAAGGATCATGCACCTCGCAACTTCAGTTTGCTGCGTC
GCTTGACCCTCAACCTCTTGCATCGCGACTCCTCAAAGGGCAGTTTAGTGATGAAACGCTACAGAGCCGGACTTGACGACCAATTTATGATGCAACTGCT
TACCCCGCTTCTACTACTTGATGAGGCATAGTTTGACCTCCTATTTTGATGCGTTTACCCTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1167 bp	388 aa	65	1231	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPPTVNRESLSACLEQYFGEITDPRVERTRAHQLLDIIAIALFAVLAGADSWVGIETYGQAKRAWLETFLALPNGIPSHDTFARVFARLDPEALETRFQH
WVKGVVSTLGAQVIAIDGKTAKGSYDREGGVKALQLVSAWASEHRLVLGQCAVDTKSNEITAIPVLLEQLALAGCIVSIDAMGTHQTIAAQIHKQQADYI
LALKGNQPTLFKQAQQWFEEFQTGSNAGAEYTQHQQCETAHHRIESRRVFQVPVEQVFTPKQGRDWAGLRSLVVIQSQRCLWNKDTTETRYFLSSLSTDA
ATFAHYIRAHWGIENQLHWCLDVVFNEDKSRIRKDHAPRNFSLLRRLTLNLLHRDSSKGSLVMKRYRAGLDDQFMMQLLTPLLLLDEA

Blast result :

Comments

ISCysp5 is 67% aa similar to ISCysp2.

References

1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Meineke,L., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P. (2009) Direct submission Genbank.