ISUnCu11

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB294750 ND uncultured bacterium
uncultured bacterium
DNA section
IS Length : 1223 bp

Ends


IR Length : 15

IRL : TAGGGCAAACGCATATTCATTTTTCAAGATAGCCAATAGCGCGTATCCTC
IRR : TAGGGCAAACGCATACTAACCTGAAAGCACCTTGACAAGATAGTCATTGT

Insertion site


Left flankDirect repeatRight flankDR Length
AACGGTTCCAATCTGGCGTCCACGGCCGCAGCGTGCA10

DNA sequence

TAGGGCAAACGCATATTCATTTTTCAAGATAGCCAATAGCGCGTATCCTCTGCAAAAATGGGGAGATACGCATGTCTGACACAGTAGTAGCTACAATTGA
AGTCCACTTCAGTAAGGTAGAAGACCCGCGCTGCACTTATCTGAATGACCATCCACTTATCAACATTATCACGATTGCCTTGTGCGCTGTCATCGCTGGT
GCAGAAAGCTGGAATGACATCGCCAACTTCGGTCAACAGAAAACCGATTGGTTGAGCAAGTTTCTAGATTTAAGAAATGGCATTCCATCACATGACACCT
TCAATCGTGTCTTTGCTCGACTAGACCCAGAGCAATTTCGCCAAGGCTTTCTTTCCTGGGTGCAAGCTGTGTTTGAAGTGAGTAATGGCCAGGTCATTGC
GATTGATGGCAAACAACTGCGGCGGTCACACGACAAAAGCAACCGGCAAAAAGCGATTCATATGGTCAGCGCCTGGGCCACAGCCAATCATCTGGTGTTG
GGTCAGGTAAAAGTAAAGGGCAAATCCAACGAGATTACGGCTATTCCCGTACTATTGGCCTTGCTGGACTTGACGGGTTGCATTGTCACCATTGATGCGA
TTGGCACGCAGACAGAAATTGCTCAGCAAATTGTTAACCAAGGCGGCGACTACCTATTGTCTGTCAAGCAAAACCAGAGGCAACTGTATGAAGACATCCA
ACTCTTCTTCAAACTGGCGCAAGAGAACGAATTTGCCAGGGTGAATCACACCTATCATCGCACGACGAATAGCGGTCATGGACGGATTGAAATCCGGCAT
TGCTGGGCGATTGCGGGCGCTGAGAGCCTGGATTTCTTACGCGGTGTAGCAAACTGGGCCAAGCTACAGACGCTTGTCATGATGCAATTCGAACGACATA
TCGGCCGTAAGATTACCCGGCAGACACACTATTTCATTACCAGCGTTACCAATGACGCTCAAGTGCTCCTGGCAGCTAAACGCAGTCATTGGGGAATTGA
AAACGAACTGCATTGGGTGCTTGACGTTGCCTTTCGTGAGGACGATTGTCGTGTTCGCCAAGGCAATGCACCACAAAATCTGGCCATCCTACGTCACATG
GCCCTCAATCTGCTCAAGCAAGAGAAGACAGCTAAAGGCGGCATCAAGGCCAAGCGTTTGCAGGCTGCTTGGAACAATGACTATCTTGTCAAGGTGCTTT
CAGGTTAGTATGCGTTTGCCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1137 bp378 aa721208+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSDTVVATIEVHFSKVEDPRCTYLNDHPLINIITIALCAVIAGAESWNDIANFGQQKTDWLSKFLDLRNGIPSHDTFNRVFARLDPEQFRQGFLSWVQAV
FEVSNGQVIAIDGKQLRRSHDKSNRQKAIHMVSAWATANHLVLGQVKVKGKSNEITAIPVLLALLDLTGCIVTIDAIGTQTEIAQQIVNQGGDYLLSVKQ
NQRQLYEDIQLFFKLAQENEFARVNHTYHRTTNSGHGRIEIRHCWAIAGAESLDFLRGVANWAKLQTLVMMQFERHIGRKITRQTHYFITSVTNDAQVLL
AAKRSHWGIENELHWVLDVAFREDDCRVRQGNAPQNLAILRHMALNLLKQEKTAKGGIKAKRLQAAWNNDYLVKVLSG

 

Blast result :
Comments
ISUnCu11 is 68% aa similar to ISAcma2.
References
1] Isfinder annotation (2009)
2] Mori,T., Suenaga,H. and Miyazaki,K. (2008) Biosci. Biotechnol. Biochem. 72 (6), 1611-1614