ISfinder Mirror Site

ISOan1

Family ISAs1
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
DS990628	ND	Octadecabacter antarcticus	Octadecabacter antarcticus 238

DNA section

IS Length : 1245 bp

Ends

IR Length : 15/16

IRL : CAGGGCAATCGCATGAACAATAACGATGACAAATGTTGTAGAGGCTGATT
IRR : CAGGGGAATCGCATGAGATTTAGGTGTTAATTATTTCGGCGAGGAAATCA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TCGATCACCCCTC	AAAGAAGGGG	CGATAGGGTTTG	10

DNA sequence

CAGGGCAATCGCATGAACAATAACGATGACAAATGTTGTAGAGGCTGATTCGATGGGTGATCTTCACTGGTTTAACGAGGTCATATGCCATGCCAAACCC
AAGTTCACCTGAGGTCCATCCCATTGAATTTCTTACGCATTTTTCAGAGATAAGCGATTCACGTCAAGAGGTTAAAGTGACTTACCCTTTGCCGGAAATA
CTCCTCTTAACCCTATGCGCTGTTTTGTCAGGTGCCAATGACTGGACGGCCATCTCGATATATGGGACCAAGAAACTGGGCTTTTTGAAGCGTTTTCTAC
CTTTTGCAGACGGGACACCGTCCCATGACCAACTTGGAAACATCTTTGCGGCCTTGGATGCCGAGGCGTTTCAGGCCTGTTTTATCGACTGGGTGGCCTC
CCTTAACAAGACGGTGACTGGAGTGGTCGCGATTGATGGGAAAACCTCTCGCCGCAGCCTGGATAAAGCTGGCGGCAAGGCCGCAATTCACATGATCTCG
GCCTGGAGTTCGGAATGGAATCTGACGCTGGCGCAACGGCAGGTGGACGGCAAGTCCAACGAGATAACGGCCATACCAGAACTGTTGGAACTGCTCACCC
TGAAGGGGGCTATTGTCACCATCGACGCTATGGGATGCCAACGCGAAATCGCCGCGAAGATCATCTCCAAAGAAGCAGACTACATCCTCGCTTTGAAGGG
TAATCAGGGCAGCCTACGCAAGGACACAGAATTATTCATGACGGAACAGGCGGCCGTAGATTATGACGACACAACAGTCACTTACCACGAAACGGTAGAG
AAGTCTCATGGCCGTATCGAAACAAGGAGGGTCACAGTGTGCACGGATATTGACTGGCTTAAAGCGGACCACAATTGGCCCGGTTTGAAAAGCATCGTTA
TGGTCCAGTACCACGCCATCCTGCAGGATAAAACGCGCGCCGAAACCCGCTATTACATTTCATCAATGACATCAGATGCTGAACATCACGCCAAAGCCAT
CCGTGACCACTGGGGAATAGAAAACGGGCTGCATTGGGTCATGGACATGGTGTTTCGCGACGATGAATGCCGTATCCGAAATGGCAATGCTCCAGCCAAT
TTTACGACCATAAAACACGTTGCAAGCAACATGCTGCGCTCCGTAAAGGGGAAGCATAGCCTGCGATCAAAGCGCCACATTGCATCATGGGATGATGATT
TCCTCGCCGAAATAATTAACACCTAAATCTCATGCGATTCCCCTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1110 bp	389 aa	117	1226	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MIFTGLTRSYAMPNPSSPEVHPIEFLTHFSEISDSRQEVKVTYPLPEILLLTLCAVLSGANDWTAISIYGTKKLGFLKRFLPFADGTPSHDQLGNIFAAL
DAEAFQACFIDWVASLNKTVTGVVAIDGKTSRRSLDKAGGKAAIHMISAWSSEWNLTLAQRQVDGKSNEITAIPELLELLTLKGAIVTIDAMGCQREIAA
KIISKEADYILALKGNQGSLRKDTELFMTEQAAVDYDDTTVTYHETVEKSHGRIETRRVTVCTDIDWLKADHNWPGLKSIVMVQYHAILQDKTRAETRYY
ISSMTSDAEHHAKAIRDHWGIENGLHWVMDMVFRDDECRIRNGNAPANFTTIKHVASNMLRSVKGKHSLRSKRHIASWDDDFLAEIINT

Blast result :

Comments

ISOan1 is 59% aa similar to ISAcma2.

References

1] ISfinder annotation (2009)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.