ISMae8

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISMae35
Accession numberTranspositionOriginHost
NC_010296 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
DNA section
IS Length : 1418 bp

Ends


IR Length : 13/15

IRL : TAGGGCTGTTTCATTCTCCCATCAGAATATCAAAAGTAAAAGCGATCAAT
IRR : TAGGGTTGATTCATTTAAATTAAGTACAGCGGATTTTGAGTCAATAAATT

Insertion site


Left flankDirect repeatRight flankDR Length
AGGTTCGATCCCCCCTGCCCCCCCTTGATAAGGTAG10

DNA sequence

TAGGGCTGTTTCATTCTCCCATCAGAATATCAAAAGTAAAAGCGATCAATATCAGGTAAAATGATAAGTGACCGCCAACCTTTTAAATATATGTTGAGCT
TAATAGAAAAACTGAAACAAGTCAAGGACTTTCGGAAAGATAAAGGAAAAAGACACCCTTTATGGATAGTATTAGTAGTAATAATACTGGGAACAATGCT
AGGATACTCAGGTTATAGAGAACTAGGAGAGTTTGCTAAAAATAATCGGCACAGGCTCAGTAAAGAATTTAACATAATTCCAGAAAGAGTCCCATCCTAT
TCAACAATTAGAAGGGTAATGATGGGAGTTGACTGGCAGAGTTTGTTAAAAATGTTTAATGAATGGGCATTAGAAGAATATGGACAAAGAGATGATATAA
ATTGGCTAGGTATGGATGGAAAAAGTCTCAAAAACACCCTAAAGAATCCTAATAATGAACAACAAAATTTTATCATGTTTGTCTCATTGTTTAGTCAAGA
AAGTGGATTAGTATTACACTTAAAAAGAATCGAAAACAAAAAAGGGTCTGAAATCGACGAAGGGCAAGCTATAATTGAGGATTGCTCTCTCCAAAATAAA
GTTTTTACTGGCGATGCTTTACACTGTCAGAAAAAAACAATCAGCTTAATAGCCAAGAGTAAAAATGACTATGTTATCACCGTTAAAGGAAATCAGAAAA
ATCTTTATAAGCGAATACAAGACCTGAGTAATTCCTCAAAGCCAGAAAGTTGCTTTCTTGAACAAGATAATAGTCATGGACGAAAAATATCAAGAAAAAT
AGAAGTTTTTAAAGTGAGAAAAAATGAAAGACAAGGGTTTGAAAATCTGCGAAGAGTTATTAAAGTAGAAAGAAAGGGTAGTCGCGGGGATAAAACCTAT
GAAGAAACAGCTTACTATATCAGTAGCCTAACCGAATCCGCTCAAGTATTTGCTAAAATTATTCGAGGACATTGGAAAATAGAAAATCAGTTACATTGGG
TAAAAGATGTAATTTTTGAGGAAGATAAAAGCGAGATAAGTGATTTTCAAGCGGCCAGCAATTGGTCAATTCTCACAACTATAGGATTGAATCTTTTCAG
AGGTTTGGGTTTTCTCTCAATAACAGAGGGACAGAGGTGGTTAGCTGAACGTTGGGAAAAACTGATAGTTTTATCGACGTAAGAAGCAGAAAAATTAGCT
AAATTAACAGGATGTACTCTCAGACAATTTCAAGAGAGATAGGCTTTTAGTGGCTTGGAAACAGGCTTTATCAATTTATTCATAATCAATATTGGCAGAG
GATTAAAGATTAGTTATTGTCACTAACTCTTTTGATTAGAAAAAGATAAACTTGAGAATTTTCATTCAAATTTATTGACTCAAAATCCGCTGTACTTAAT
TTAAATGAATCAACCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp363 aa911182+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MLSLIEKLKQVKDFRKDKGKRHPLWIVLVVIILGTMLGYSGYRELGEFAKNNRHRLSKEFNIIPERVPSYSTIRRVMMGVDWQSLLKMFNEWALEEYGQR
DDINWLGMDGKSLKNTLKNPNNEQQNFIMFVSLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCSLQNKVFTGDALHCQKKTISLIAKSKNDYVITVKG
NQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRVIKVERKGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQ
LHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST

 

Blast result :
Comments
ISMae8 is 73% aa similar to ISPlr1.
The ends are not CAGGG as in other ISAs1 family member but TAGGG, and it is the same in all copies in this genome.
References
1] ISfinder annotation (2009)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256