ISSme3
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Sinorhizobium medicae | Sinorhizobium medicae WSM419
Sinorhizobium meliloti 1021 Sinorhizobium meliloti GR4 Sinorhizobium meliloti SM11 Sinorhizobium meliloti AK83 Sinorhizobium meliloti Rm41 Ochrobactrum anthropi ATCC 49188 |
DNA section
IS Length : 3149 bp
Ends
IR Length : 19/22
IRL : GTGAGCGCTACGAACAGCCCACCTTGCCTTTGCTGATTGAGACCGCGAGA
IRR : GTGAGCGCGACGAGCATCCCACGGCTTTCGTCTGTTGACGGAGGAGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGATCGTC | GACTTGCC | AGAGGAATTG | 8 |
CAGGTTACAT | ATCCAGTT | TAGAGGACTT | 8 |
GGTGGTGGCA | GTACAGCG | GTACTGCCAA | 8 |
CCCGAAGAAT | ATTCTTCG | CGAAGAATAA | 8 |
DNA sequence
GTGAGCGCTACGAACAGCCCACCTTGCCTTTGCTGATTGAGACCGCGAGATAAGCTCCGTCATCGACAGGAGTGGAACGGGATGGTTGGAGATCGCGCTG
GTGCCATGCTTGGAGTCATGCATGAAGCCATGGATGAAGCCAGGCATGATGGAGCCTACCGGCGGATCGAGCTGATCACCGGGCGACGCCAGCGGCGGAA
TTGGACCGACGAGGAGAAGGCGCGGATCCTTGCGGAGAGCGCTGAACCCGGAGTGAACATCTCGGCTGTTGCCCGGCGTTGGGGCGTCAATCGCGGCTTG
CTGAATGTCTGGCGCCGCGAAGCCGGGCTGACCTCTCGACGATCAGAGCAAGCCTGCGCACAGCAGGCGATGTTCGTGCCGGTGACAGTGGTTGGAGAAC
GAACGCTTCACCAGAGCGCGTCGTCGGATATCGCTTCCGTCGCTTCCGGTCGAATTGAGATCGAGATTGCCGGGGCGCGCATGACCGTGATCGGCTCGGT
GGCGCCCGAGTTGGCGCAGGCGATGGTGGCGGCGTTGCGAGGACGCCGGTGATCGGAGTTTCGCCGAATGCCGTGAAGATCATGGTGGCGACGCAGCCTG
TCGACTTCCGGCGCGGCATGAATGGCCTGGTGGCTTTGGTGGCATCAGCGCTTGCGGCCGATCCCTATTGTGGCGACGTGTTCGTGTTCCGGGCCAAGCG
TCTCGATCGACTTCGCTGCATTTACTGGGACGGATCAGGCATGATCCTGGTGACGAAATGGCTGGAGGCGGGCAAGTTCGTTTGGCCACCGATCCGCGAT
GGCGCGATGCAGATGAGTAGCCAGGAGTTCTCGCTTTTGTTGGCCGGTATCGACTGGACGCGGGTCAAACGAAACGCGGTAAAGCGACCGACGAAAGCAG
GCTGATCCTATTGGTTTTGCTTGCAGATTCAGGCTTGTGTGGTAGGGTCGTCCATGCCGCTCCGACCCACCCCCTTGCCTCAGGATGCTGCGCAATTAAC
CCGGATCATTCTCTCGCTCGACGAAGAGAATGCCGATCTCAAAGCGCGCGTCGCCTTCCTCGAGGGCCAGCTCTTTGGGCCGAAGTCGGAGAAAATGACG
GCGATCGACCCGACGCAGGCGACGCTCGACCTTGGCGACCTCAGCGACATTCCCGCAGCTGCCAATGACGATGTTGCGCCCGTCACCGAGGGGACAACAC
CGGCTCGACGATCGCCAGCCCGCAATATCGGCCGTTTGCCCAAGCACCTTCCCCGGTATGAAGAGGTCATCGAGCCGGAGAGCAAGAGCTGCCCCTGCTG
TTCGTTCGACCTGCATTGCATCGGCACGGATGTCAGCGAGGCGCTCGACATCGTGCCGGCTGTTGTCCGGGTCAAACGGACGATCCGGCCGCGCTACGCA
TGCCGGGCCTGCGAAAGCGTTGTTGTGCAAGCGCCCGCGCCGGCGCGTGTGATGGACGGCGGCATGGTGACTACGGCCTTTGCCGCCCATGTCGCCGTTT
CGAAGTTTGCCTGGCATCTGCCGCTGCATCGCCAGGCGCAGATGCTTGCCTCCTGCGGCGTGGTGATCGATCGCGGCACGCTCGGCGCCTGGGTGACGCG
GATCGCTTGGTGGCTCGAGCTTCTCTACGATGCGCTTACCGCCTTCATCCGCTCCCAGCCAAGGGTGTTCTGTGACGAGACGCCGCTTCCGCGGCTCGAT
CCGGGGCGCAAGCGCACCAAGCTCTGCCAGTTATGGGCACAGGCCATCGATGATCGCCCATGGAATGGTCCGGCGCCACCGGCGGTCGCCTATATCTTTG
CCGACAGCCGCAGCGCCCGTGAGGTCGAGGGGCAACTATCGTCGTTTGGCGGCGTGCTTCAAGTCGATGGCTACCAAGCCTATAAGACCATGGCCAAGCG
CCGGGGGAAGAGCAATGTCGCCCCCATGCGGCTGGCGTTCTGCCTTGCCCATGCGCGGCGCAAGTTCGTCGATGTCGTCAAACTGACCGGCTCCTCGGAG
GCGCTGTCGATCCTTGCCAGGATTGCCGAGATCTATCGCATCGAAGCGAAGATCCGAGGCGAAAGTGCCGATACCCGGCTGAGGGTGCGGCGTCGCGAGG
CAGCGCCCATCATGAGCGAACTGAAGGCCCAGCTCACCGAACTGAGCGACGAGGTGTCGGCAAAATCGGCGCTTGGCAAGGCCGTCACCTACACGCTCAA
CCACTGGAACGGACTGGCAGCCTTCCTAGAGGATGGCCGGATCGAAGTAGACTCCAATGTGGTCGAGCGTTCGATGAAATCGGTGGCCCTGACGAGGAAG
AATTCCTTGTTCGTGGGCAGTGCGCGCGGCGGAGAGACTTTCGCTGTGCTCGCATCACTGATCAACACGGCAAAGCTTAACGGCGTGGATCCTGAAGTCT
GGCTTGCCGATGTGCTGGAACGCATCATCTCCGGCAAAGTGAAAGCCAACCGGATGGAAAGCCTATTGCCGTGGGCTTGGAAGGCCGAACGCGAGGACAT
TGCAGATCAGGAGCGACGGGCGGCATGACACAGAACAGCCAAGGGACGACGGTACGACCGAAGCTCGATGACGAGGCGTTCGAAGCCTTCATCAGGGCAC
GTCGTCCGGCATCGCCAATCTGGTCAATGAGCGGTCTCGATGGCTATCTCACGGCTCTCATCATCGGCCCGAAGTTTATCGACCCACGTCAATGGATCCC
GGAGCTGACTGGCCCGGAGGCACTGAACCTGCCGATGGAAACGACCGAGCATCGGGCCGTACAGACCATCGTTGCGGAATATAACCGCATCTCGGCGAGC
CTCGCCGAAACGCCAAAAGACCACCGGCCCAGGTTCACCAGGATCGATGATCAGACCTTTGATGCCATGGACTGGGACGTCTGCTTTCTGATGGGAACCG
GGTTCGCGCCGAAGCTGTGGCGGCCCGTCGTTCGCGGTCATGCCGTCACTGGCGACATCATTGCGCCAATCCGCAAGCTCAGCGAGACAAAAGGACCAGC
TACCCACAAGGATGCTGCTGCCGTCGCCGAGGCGCTCGTCAATATCCGAAGCTACTTCATGCCAAAGCGCGCAAAGCAGAAGTTCTAAAACAGCGGACGG
CTCCTCCTCCGTCAACAGACGAAAGCCGTGGGATGCTCGTCGCGCTCAC
GTGCCATGCTTGGAGTCATGCATGAAGCCATGGATGAAGCCAGGCATGATGGAGCCTACCGGCGGATCGAGCTGATCACCGGGCGACGCCAGCGGCGGAA
TTGGACCGACGAGGAGAAGGCGCGGATCCTTGCGGAGAGCGCTGAACCCGGAGTGAACATCTCGGCTGTTGCCCGGCGTTGGGGCGTCAATCGCGGCTTG
CTGAATGTCTGGCGCCGCGAAGCCGGGCTGACCTCTCGACGATCAGAGCAAGCCTGCGCACAGCAGGCGATGTTCGTGCCGGTGACAGTGGTTGGAGAAC
GAACGCTTCACCAGAGCGCGTCGTCGGATATCGCTTCCGTCGCTTCCGGTCGAATTGAGATCGAGATTGCCGGGGCGCGCATGACCGTGATCGGCTCGGT
GGCGCCCGAGTTGGCGCAGGCGATGGTGGCGGCGTTGCGAGGACGCCGGTGATCGGAGTTTCGCCGAATGCCGTGAAGATCATGGTGGCGACGCAGCCTG
TCGACTTCCGGCGCGGCATGAATGGCCTGGTGGCTTTGGTGGCATCAGCGCTTGCGGCCGATCCCTATTGTGGCGACGTGTTCGTGTTCCGGGCCAAGCG
TCTCGATCGACTTCGCTGCATTTACTGGGACGGATCAGGCATGATCCTGGTGACGAAATGGCTGGAGGCGGGCAAGTTCGTTTGGCCACCGATCCGCGAT
GGCGCGATGCAGATGAGTAGCCAGGAGTTCTCGCTTTTGTTGGCCGGTATCGACTGGACGCGGGTCAAACGAAACGCGGTAAAGCGACCGACGAAAGCAG
GCTGATCCTATTGGTTTTGCTTGCAGATTCAGGCTTGTGTGGTAGGGTCGTCCATGCCGCTCCGACCCACCCCCTTGCCTCAGGATGCTGCGCAATTAAC
CCGGATCATTCTCTCGCTCGACGAAGAGAATGCCGATCTCAAAGCGCGCGTCGCCTTCCTCGAGGGCCAGCTCTTTGGGCCGAAGTCGGAGAAAATGACG
GCGATCGACCCGACGCAGGCGACGCTCGACCTTGGCGACCTCAGCGACATTCCCGCAGCTGCCAATGACGATGTTGCGCCCGTCACCGAGGGGACAACAC
CGGCTCGACGATCGCCAGCCCGCAATATCGGCCGTTTGCCCAAGCACCTTCCCCGGTATGAAGAGGTCATCGAGCCGGAGAGCAAGAGCTGCCCCTGCTG
TTCGTTCGACCTGCATTGCATCGGCACGGATGTCAGCGAGGCGCTCGACATCGTGCCGGCTGTTGTCCGGGTCAAACGGACGATCCGGCCGCGCTACGCA
TGCCGGGCCTGCGAAAGCGTTGTTGTGCAAGCGCCCGCGCCGGCGCGTGTGATGGACGGCGGCATGGTGACTACGGCCTTTGCCGCCCATGTCGCCGTTT
CGAAGTTTGCCTGGCATCTGCCGCTGCATCGCCAGGCGCAGATGCTTGCCTCCTGCGGCGTGGTGATCGATCGCGGCACGCTCGGCGCCTGGGTGACGCG
GATCGCTTGGTGGCTCGAGCTTCTCTACGATGCGCTTACCGCCTTCATCCGCTCCCAGCCAAGGGTGTTCTGTGACGAGACGCCGCTTCCGCGGCTCGAT
CCGGGGCGCAAGCGCACCAAGCTCTGCCAGTTATGGGCACAGGCCATCGATGATCGCCCATGGAATGGTCCGGCGCCACCGGCGGTCGCCTATATCTTTG
CCGACAGCCGCAGCGCCCGTGAGGTCGAGGGGCAACTATCGTCGTTTGGCGGCGTGCTTCAAGTCGATGGCTACCAAGCCTATAAGACCATGGCCAAGCG
CCGGGGGAAGAGCAATGTCGCCCCCATGCGGCTGGCGTTCTGCCTTGCCCATGCGCGGCGCAAGTTCGTCGATGTCGTCAAACTGACCGGCTCCTCGGAG
GCGCTGTCGATCCTTGCCAGGATTGCCGAGATCTATCGCATCGAAGCGAAGATCCGAGGCGAAAGTGCCGATACCCGGCTGAGGGTGCGGCGTCGCGAGG
CAGCGCCCATCATGAGCGAACTGAAGGCCCAGCTCACCGAACTGAGCGACGAGGTGTCGGCAAAATCGGCGCTTGGCAAGGCCGTCACCTACACGCTCAA
CCACTGGAACGGACTGGCAGCCTTCCTAGAGGATGGCCGGATCGAAGTAGACTCCAATGTGGTCGAGCGTTCGATGAAATCGGTGGCCCTGACGAGGAAG
AATTCCTTGTTCGTGGGCAGTGCGCGCGGCGGAGAGACTTTCGCTGTGCTCGCATCACTGATCAACACGGCAAAGCTTAACGGCGTGGATCCTGAAGTCT
GGCTTGCCGATGTGCTGGAACGCATCATCTCCGGCAAAGTGAAAGCCAACCGGATGGAAAGCCTATTGCCGTGGGCTTGGAAGGCCGAACGCGAGGACAT
TGCAGATCAGGAGCGACGGGCGGCATGACACAGAACAGCCAAGGGACGACGGTACGACCGAAGCTCGATGACGAGGCGTTCGAAGCCTTCATCAGGGCAC
GTCGTCCGGCATCGCCAATCTGGTCAATGAGCGGTCTCGATGGCTATCTCACGGCTCTCATCATCGGCCCGAAGTTTATCGACCCACGTCAATGGATCCC
GGAGCTGACTGGCCCGGAGGCACTGAACCTGCCGATGGAAACGACCGAGCATCGGGCCGTACAGACCATCGTTGCGGAATATAACCGCATCTCGGCGAGC
CTCGCCGAAACGCCAAAAGACCACCGGCCCAGGTTCACCAGGATCGATGATCAGACCTTTGATGCCATGGACTGGGACGTCTGCTTTCTGATGGGAACCG
GGTTCGCGCCGAAGCTGTGGCGGCCCGTCGTTCGCGGTCATGCCGTCACTGGCGACATCATTGCGCCAATCCGCAAGCTCAGCGAGACAAAAGGACCAGC
TACCCACAAGGATGCTGCTGCCGTCGCCGAGGCGCTCGTCAATATCCGAAGCTACTTCATGCCAAAGCGCGCAAAGCAGAAGTTCTAAAACAGCGGACGG
CTCCTCCTCCGTCAACAGACGAAAGCCGTGGGATGCTCGTCGCGCTCAC
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
471 bp | 157 aa | 82 | 552 | + | No |
Description :
ORF sequence :
MVGDRAGAMLGVMHEAMDEARHDGAYRRIELITGRRQRRNWTDEEKARILAESAEPGVNISAVARRWGVNRGLLNVWRREAGLTSRRSEQACAQQAMFVP
VTVVGERTLHQSASSDIASVASGRIEIEIAGARMTVIGSVAPELAQAMVAALRGRR
VTVVGERTLHQSASSDIASVASGRIEIEIAGARMTVIGSVAPELAQAMVAALRGRR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
357 bp | 119 aa | 549 | 905 | + | No |
Description :
ORF sequence :
MIGVSPNAVKIMVATQPVDFRRGMNGLVALVASALAADPYCGDVFVFRAKRLDRLRCIYWDGSGMILVTKWLEAGKFVWPPIRDGAMQMSSQEFSLLLAG
IDWTRVKRNAVKRPTKAG
IDWTRVKRNAVKRPTKAG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1575 bp | 525 aa | 954 | 2528 | + | No |
Description :
ORF sequence :
MPLRPTPLPQDAAQLTRIILSLDEENADLKARVAFLEGQLFGPKSEKMTAIDPTQATLDLGDLSDIPAAANDDVAPVTEGTTPARRSPARNIGRLPKHLP
RYEEVIEPESKSCPCCSFDLHCIGTDVSEALDIVPAVVRVKRTIRPRYACRACESVVVQAPAPARVMDGGMVTTAFAAHVAVSKFAWHLPLHRQAQMLAS
CGVVIDRGTLGAWVTRIAWWLELLYDALTAFIRSQPRVFCDETPLPRLDPGRKRTKLCQLWAQAIDDRPWNGPAPPAVAYIFADSRSAREVEGQLSSFGG
VLQVDGYQAYKTMAKRRGKSNVAPMRLAFCLAHARRKFVDVVKLTGSSEALSILARIAEIYRIEAKIRGESADTRLRVRRREAAPIMSELKAQLTELSDE
VSAKSALGKAVTYTLNHWNGLAAFLEDGRIEVDSNVVERSMKSVALTRKNSLFVGSARGGETFAVLASLINTAKLNGVDPEVWLADVLERIISGKVKANR
MESLLPWAWKAEREDIADQERRAA
RYEEVIEPESKSCPCCSFDLHCIGTDVSEALDIVPAVVRVKRTIRPRYACRACESVVVQAPAPARVMDGGMVTTAFAAHVAVSKFAWHLPLHRQAQMLAS
CGVVIDRGTLGAWVTRIAWWLELLYDALTAFIRSQPRVFCDETPLPRLDPGRKRTKLCQLWAQAIDDRPWNGPAPPAVAYIFADSRSAREVEGQLSSFGG
VLQVDGYQAYKTMAKRRGKSNVAPMRLAFCLAHARRKFVDVVKLTGSSEALSILARIAEIYRIEAKIRGESADTRLRVRRREAAPIMSELKAQLTELSDE
VSAKSALGKAVTYTLNHWNGLAAFLEDGRIEVDSNVVERSMKSVALTRKNSLFVGSARGGETFAVLASLINTAKLNGVDPEVWLADVLERIISGKVKANR
MESLLPWAWKAEREDIADQERRAA
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
564 bp | 188 aa | 2525 | 3088 | + | No |
Description :
ORF sequence :
MTQNSQGTTVRPKLDDEAFEAFIRARRPASPIWSMSGLDGYLTALIIGPKFIDPRQWIPELTGPEALNLPMETTEHRAVQTIVAEYNRISASLAETPKDH
RPRFTRIDDQTFDAMDWDVCFLMGTGFAPKLWRPVVRGHAVTGDIIAPIRKLSETKGPATHKDAAAVAEALVNIRSYFMPKRAKQKF
RPRFTRIDDQTFDAMDWDVCFLMGTGFAPKLWRPVVRGHAVTGDIIAPIRKLSETKGPATHKDAAAVAEALVNIRSYFMPKRAKQKF
Blast result :
Comments
References