ISSme3

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Sinorhizobium medicae
Sinorhizobium medicae WSM419
Sinorhizobium meliloti 1021
Sinorhizobium meliloti GR4
Sinorhizobium meliloti SM11
Sinorhizobium meliloti AK83
Sinorhizobium meliloti Rm41
Ochrobactrum anthropi ATCC 49188
DNA section
IS Length : 3149 bp

Ends


IR Length : 19/22

IRL : GTGAGCGCTACGAACAGCCCACCTTGCCTTTGCTGATTGAGACCGCGAGA
IRR : GTGAGCGCGACGAGCATCCCACGGCTTTCGTCTGTTGACGGAGGAGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
CATGATCGTCGACTTGCCAGAGGAATTG8
CAGGTTACATATCCAGTTTAGAGGACTT8
GGTGGTGGCAGTACAGCGGTACTGCCAA8
CCCGAAGAATATTCTTCGCGAAGAATAA8

DNA sequence

GTGAGCGCTACGAACAGCCCACCTTGCCTTTGCTGATTGAGACCGCGAGATAAGCTCCGTCATCGACAGGAGTGGAACGGGATGGTTGGAGATCGCGCTG
GTGCCATGCTTGGAGTCATGCATGAAGCCATGGATGAAGCCAGGCATGATGGAGCCTACCGGCGGATCGAGCTGATCACCGGGCGACGCCAGCGGCGGAA
TTGGACCGACGAGGAGAAGGCGCGGATCCTTGCGGAGAGCGCTGAACCCGGAGTGAACATCTCGGCTGTTGCCCGGCGTTGGGGCGTCAATCGCGGCTTG
CTGAATGTCTGGCGCCGCGAAGCCGGGCTGACCTCTCGACGATCAGAGCAAGCCTGCGCACAGCAGGCGATGTTCGTGCCGGTGACAGTGGTTGGAGAAC
GAACGCTTCACCAGAGCGCGTCGTCGGATATCGCTTCCGTCGCTTCCGGTCGAATTGAGATCGAGATTGCCGGGGCGCGCATGACCGTGATCGGCTCGGT
GGCGCCCGAGTTGGCGCAGGCGATGGTGGCGGCGTTGCGAGGACGCCGGTGATCGGAGTTTCGCCGAATGCCGTGAAGATCATGGTGGCGACGCAGCCTG
TCGACTTCCGGCGCGGCATGAATGGCCTGGTGGCTTTGGTGGCATCAGCGCTTGCGGCCGATCCCTATTGTGGCGACGTGTTCGTGTTCCGGGCCAAGCG
TCTCGATCGACTTCGCTGCATTTACTGGGACGGATCAGGCATGATCCTGGTGACGAAATGGCTGGAGGCGGGCAAGTTCGTTTGGCCACCGATCCGCGAT
GGCGCGATGCAGATGAGTAGCCAGGAGTTCTCGCTTTTGTTGGCCGGTATCGACTGGACGCGGGTCAAACGAAACGCGGTAAAGCGACCGACGAAAGCAG
GCTGATCCTATTGGTTTTGCTTGCAGATTCAGGCTTGTGTGGTAGGGTCGTCCATGCCGCTCCGACCCACCCCCTTGCCTCAGGATGCTGCGCAATTAAC
CCGGATCATTCTCTCGCTCGACGAAGAGAATGCCGATCTCAAAGCGCGCGTCGCCTTCCTCGAGGGCCAGCTCTTTGGGCCGAAGTCGGAGAAAATGACG
GCGATCGACCCGACGCAGGCGACGCTCGACCTTGGCGACCTCAGCGACATTCCCGCAGCTGCCAATGACGATGTTGCGCCCGTCACCGAGGGGACAACAC
CGGCTCGACGATCGCCAGCCCGCAATATCGGCCGTTTGCCCAAGCACCTTCCCCGGTATGAAGAGGTCATCGAGCCGGAGAGCAAGAGCTGCCCCTGCTG
TTCGTTCGACCTGCATTGCATCGGCACGGATGTCAGCGAGGCGCTCGACATCGTGCCGGCTGTTGTCCGGGTCAAACGGACGATCCGGCCGCGCTACGCA
TGCCGGGCCTGCGAAAGCGTTGTTGTGCAAGCGCCCGCGCCGGCGCGTGTGATGGACGGCGGCATGGTGACTACGGCCTTTGCCGCCCATGTCGCCGTTT
CGAAGTTTGCCTGGCATCTGCCGCTGCATCGCCAGGCGCAGATGCTTGCCTCCTGCGGCGTGGTGATCGATCGCGGCACGCTCGGCGCCTGGGTGACGCG
GATCGCTTGGTGGCTCGAGCTTCTCTACGATGCGCTTACCGCCTTCATCCGCTCCCAGCCAAGGGTGTTCTGTGACGAGACGCCGCTTCCGCGGCTCGAT
CCGGGGCGCAAGCGCACCAAGCTCTGCCAGTTATGGGCACAGGCCATCGATGATCGCCCATGGAATGGTCCGGCGCCACCGGCGGTCGCCTATATCTTTG
CCGACAGCCGCAGCGCCCGTGAGGTCGAGGGGCAACTATCGTCGTTTGGCGGCGTGCTTCAAGTCGATGGCTACCAAGCCTATAAGACCATGGCCAAGCG
CCGGGGGAAGAGCAATGTCGCCCCCATGCGGCTGGCGTTCTGCCTTGCCCATGCGCGGCGCAAGTTCGTCGATGTCGTCAAACTGACCGGCTCCTCGGAG
GCGCTGTCGATCCTTGCCAGGATTGCCGAGATCTATCGCATCGAAGCGAAGATCCGAGGCGAAAGTGCCGATACCCGGCTGAGGGTGCGGCGTCGCGAGG
CAGCGCCCATCATGAGCGAACTGAAGGCCCAGCTCACCGAACTGAGCGACGAGGTGTCGGCAAAATCGGCGCTTGGCAAGGCCGTCACCTACACGCTCAA
CCACTGGAACGGACTGGCAGCCTTCCTAGAGGATGGCCGGATCGAAGTAGACTCCAATGTGGTCGAGCGTTCGATGAAATCGGTGGCCCTGACGAGGAAG
AATTCCTTGTTCGTGGGCAGTGCGCGCGGCGGAGAGACTTTCGCTGTGCTCGCATCACTGATCAACACGGCAAAGCTTAACGGCGTGGATCCTGAAGTCT
GGCTTGCCGATGTGCTGGAACGCATCATCTCCGGCAAAGTGAAAGCCAACCGGATGGAAAGCCTATTGCCGTGGGCTTGGAAGGCCGAACGCGAGGACAT
TGCAGATCAGGAGCGACGGGCGGCATGACACAGAACAGCCAAGGGACGACGGTACGACCGAAGCTCGATGACGAGGCGTTCGAAGCCTTCATCAGGGCAC
GTCGTCCGGCATCGCCAATCTGGTCAATGAGCGGTCTCGATGGCTATCTCACGGCTCTCATCATCGGCCCGAAGTTTATCGACCCACGTCAATGGATCCC
GGAGCTGACTGGCCCGGAGGCACTGAACCTGCCGATGGAAACGACCGAGCATCGGGCCGTACAGACCATCGTTGCGGAATATAACCGCATCTCGGCGAGC
CTCGCCGAAACGCCAAAAGACCACCGGCCCAGGTTCACCAGGATCGATGATCAGACCTTTGATGCCATGGACTGGGACGTCTGCTTTCTGATGGGAACCG
GGTTCGCGCCGAAGCTGTGGCGGCCCGTCGTTCGCGGTCATGCCGTCACTGGCGACATCATTGCGCCAATCCGCAAGCTCAGCGAGACAAAAGGACCAGC
TACCCACAAGGATGCTGCTGCCGTCGCCGAGGCGCTCGTCAATATCCGAAGCTACTTCATGCCAAAGCGCGCAAAGCAGAAGTTCTAAAACAGCGGACGG
CTCCTCCTCCGTCAACAGACGAAAGCCGTGGGATGCTCGTCGCGCTCAC
Protein section
ORF number : 4

 

ORF 1
LengthBeginEndStrandFusion ORF
471 bp157 aa82552+No
ORF function : Transposase
Description :

ORF sequence :

MVGDRAGAMLGVMHEAMDEARHDGAYRRIELITGRRQRRNWTDEEKARILAESAEPGVNISAVARRWGVNRGLLNVWRREAGLTSRRSEQACAQQAMFVP
VTVVGERTLHQSASSDIASVASGRIEIEIAGARMTVIGSVAPELAQAMVAALRGRR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
357 bp119 aa549905+No
ORF function : Transposase
Description :

ORF sequence :

MIGVSPNAVKIMVATQPVDFRRGMNGLVALVASALAADPYCGDVFVFRAKRLDRLRCIYWDGSGMILVTKWLEAGKFVWPPIRDGAMQMSSQEFSLLLAG
IDWTRVKRNAVKRPTKAG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1575 bp525 aa9542528+No
ORF function : Transposase
Description :

ORF sequence :

MPLRPTPLPQDAAQLTRIILSLDEENADLKARVAFLEGQLFGPKSEKMTAIDPTQATLDLGDLSDIPAAANDDVAPVTEGTTPARRSPARNIGRLPKHLP
RYEEVIEPESKSCPCCSFDLHCIGTDVSEALDIVPAVVRVKRTIRPRYACRACESVVVQAPAPARVMDGGMVTTAFAAHVAVSKFAWHLPLHRQAQMLAS
CGVVIDRGTLGAWVTRIAWWLELLYDALTAFIRSQPRVFCDETPLPRLDPGRKRTKLCQLWAQAIDDRPWNGPAPPAVAYIFADSRSAREVEGQLSSFGG
VLQVDGYQAYKTMAKRRGKSNVAPMRLAFCLAHARRKFVDVVKLTGSSEALSILARIAEIYRIEAKIRGESADTRLRVRRREAAPIMSELKAQLTELSDE
VSAKSALGKAVTYTLNHWNGLAAFLEDGRIEVDSNVVERSMKSVALTRKNSLFVGSARGGETFAVLASLINTAKLNGVDPEVWLADVLERIISGKVKANR
MESLLPWAWKAEREDIADQERRAA

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
564 bp188 aa25253088+No
ORF function : Transposase
Description :

ORF sequence :

MTQNSQGTTVRPKLDDEAFEAFIRARRPASPIWSMSGLDGYLTALIIGPKFIDPRQWIPELTGPEALNLPMETTEHRAVQTIVAEYNRISASLAETPKDH
RPRFTRIDDQTFDAMDWDVCFLMGTGFAPKLWRPVVRGHAVTGDIIAPIRKLSETKGPATHKDAAAVAEALVNIRSYFMPKRAKQKF

 

Blast result :
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References