ISThsp19

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 2657 bp

Ends


IR Length : 23/28

IRL : TGTTGGCGCCGACCGAAAACTGAGCCACTTATGAGGGTAGTGCCGACCCA
IRR : TGTCGGCGCCGATTCAAATTTGAGCCACCGTGCCGACTGAATATTGAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGAACGGGGTCGAGCTACGGCGCAACACATCATCGCGGGT0

DNA sequence

TGTTGGCGCCGACCGAAAACTGAGCCACTTATGAGGGTAGTGCCGACCCAAAACTGAGCCAGGTGAACGACCTACTCTGCTGCTTTTTTGAGCAGCAGAG
GACCAGGAGTGATCACCATGGACATGATTGGCAGGATCCGGCATTTGCATGCCCGGAAGAACAAATCGGAGCGCGAGATTGCGCGCATGACAGGGCTCTC
GCGCAACACGGTTGCGAAGTGGTTGCACGGCGAGGTGGACGGCCCACCGAAGTACCGGCGCGGAGAGCAGCCCAACAAGCTCACGGCGTTCCACGACGCG
CTCAGGCAAGCGTTGAAGGCCGACGCGCGGCGGCCCAAACACGAGCGGCGCACGGCCAAAGCGCTGTACGCCGAGATCAGGCGCGCGGGCTATGAGGGTG
GCTACACGCGGGTGACCGACTTCATCCGGGCGTGGCGCCAGGGCGAAGGCCAGGGGTCTGCGGTCAACGCTTTTGTGCCGCTGGCCTTCGAGCTGGGCGA
AGCCTTCCAGTTCGACTGGAGCGAGGAAGGCATGGTGATTGGCGGCATCTACTACCGGGTGCAGGTCTCCCACATGAAGCTGTGCGCCAGTCGGGCCTTC
TGGCTGGTGGCCTACCCCAGCCAGGGCCACGAGATGCTGTTCGATGCCCACACCCGGTCGTTCGCGGCGCTCGGCGGCGTGGCGCGCCGGGGCATCTATG
ACAACATGAAGACGGCCGTTGACAAGGTCAAGAAAGGCAAGGGACGCATCGTCAACGAGCGCTTTGCCACCATGTGCGCGCACTACCTGTACGACCCGGA
CTTCTGCAACGTGGCCAGTGGCTGGGAGAAAGGGGTGGTGGAGAAGAACGTGCAGGACAGCCGTCGGCGCATCTGGATCGACGCGGCCAAGATCAAGTTC
GGCAGCTTCAGCGAACTCAACGCCTGGCTGGGCCAGCGCTGCCGCGCGTTGTGGGACGAGGTGCGCCACCCCGAGCACACCCAGTTCAGCGTGGCCGAGA
TGCTCGAACACGAGCGCGCGCGCCTCATGCCCATGCCGGTGCCGTTCGATGGCTACGTCGAGAAACCCGCGCGGGTCTCCAGCACCTGTCTGGTGTCGGT
GGCGCGCAACCGCTATTCGGTGCCGTGCGAACGGGTGGGGCAGATAGTCAGCACACGGCTGTACCCGGGCAGCGTCGCCATCGTGGTCGACGACACCATC
GTGGCCCGCCACGACCGGCTCAGCAACGCGGGGGAGACCCGGTACGACTGGCAGCACTACATCCCGCTGCTGCAGAGGAAGCCTGGCGCGCTGAGGAACG
GCGCGCCTTTTGCCGACATGCCCGAGCCGCTGCAGCGACTGCGCCGTGGGCTGCTGCGCAACCCAGGCGGCGACCGGGTCATGGCGCAGGTGCTGGCGAT
CGTGCTCAGCGCCGGTCTGGATGCGGTGCTGGTGGCCATCGAACTGGCGCTGGAGAGCGGTCCACCGGGCAAGGTCAGTGTGGAGCATGTGGTCAATGTG
CTGAGCCGACTCAACGCGCAGCCGGTGCCGCCCACGGCGGCTACGCTGCTGAGAGTGAACACGCCGCCGCTGGTGAACACGGCGCGCTACGACAGCCTGC
GCTCGGACGCCGCGGGCGCCATCACCGAGGGAGCCGGCCATGAAGACTGATGTACTGCTCGAACTCAAGGCTCTGCGTCTGCACGGCATGGCCAGCGCGT
GGGCCGATCTGGTCGAGCAAGGCGGCGGCGAGGCAGGCGGTGTGGGCATCGAGTCCTCACGCTGGCTGATCGAGCATCTGCTGCAGGCCGAGGGCACAGA
CCGTGCGATGCGCTCGGTCAGTCACCAGATGCACGCGGCGAAGTTCCCGGTGCACCGCGACATGGCGGGCTTTGACTTCGAGGTCTCGCCGGTGGACCGC
AAGCTAGTGGAGACTCTGGCCACCACGGCCTTCACTGAGGAGGCGCACAACGTGGTGCTGGTGGGCGGGCCTGGCACTGGAAAGACCCATCTGGCCACGG
CCATGGGCGTCTCGGGCATCACCCGGCACGGCAAGCGGGTGCGGTTCTACTCCACGGTCGATCTGGTCAACGCACTGGAGCAGGAGAAGGCCCAAGGCAG
GGCCGGGCGCATCGCCACCAGCCTGCTGCGCATGGACCTGATCATTCTGGACGAGCTGGGCTATCTGCCGTTCAGCCAGGCCGGTGGGGCGTTGCTGTTC
CACCTGCTCAGCAAGCTGTACGAGCACACCAGCGTGATGCTCACGACCAACCTGGACTTCGCCGAATGGTCCAGCGTGTTCGGCGACGCGAAGATGACCA
CCGCACTGCTGGACCGGCTCACGCACCACTGCCACATCGTGGAAACAGGCAACGAGTCGATCCGGTTTAGCCGCAGCACGGCTGCAGCCAAGAAGCGAAT
CAAGGCCCGCGAGCAGGCGCGCAAGGACGTCTCGGCGCAGGCAGAACCCGCCCCATTCTGAGCACGCTCCGCGATGGGCAAGCCGCTACGGGCTACGCCC
TGCGCGGCTTGCCCATCGGCTTCAACACAACAACAAGGAGGTCCCCGAACCAGCACAGCCCCTACACTTATCCACAGCCGACCCTCTCAAAATCGGCTTC
CACCCCTGGCTCAATATTCAGTCGGCACGGTGGCTCAAATTTGAATCGGCGCCGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1533 bp510 aa1181650+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDMIGRIRHLHARKNKSEREIARMTGLSRNTVAKWLHGEVDGPPKYRRGEQPNKLTAFHDALRQALKADARRPKHERRTAKALYAEIRRAGYEGGYTRVT
DFIRAWRQGEGQGSAVNAFVPLAFELGEAFQFDWSEEGMVIGGIYYRVQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDKVKKGKGRIVNERFATMCAHYLYDPDFCNVASGWEKGVVEKNVQDSRRRIWIDAAKIKFGSFSELNAWLGQRCRALWDEVRHPEHTQFSVAEMLEHER
ARLMPMPVPFDGYVEKPARVSSTCLVSVARNRYSVPCERVGQIVSTRLYPGSVAIVVDDTIVARHDRLSNAGETRYDWQHYIPLLQRKPGALRNGAPFAD
MPEPLQRLRRGLLRNPGGDRVMAQVLAIVLSAGLDAVLVAIELALESGPPGKVSVEHVVNVLSRLNAQPVPPTAATLLRVNTPPLVNTARYDSLRSDAAG
AITEGAGHED

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
822 bp273 aa16402461+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MKTDVLLELKALRLHGMASAWADLVEQGGGEAGGVGIESSRWLIEHLLQAEGTDRAMRSVSHQMHAAKFPVHRDMAGFDFEVSPVDRKLVETLATTAFTE
EAHNVVLVGGPGTGKTHLATAMGVSGITRHGKRVRFYSTVDLVNALEQEKAQGRAGRIATSLLRMDLIILDELGYLPFSQAGGALLFHLLSKLYEHTSVM
LTTNLDFAEWSSVFGDAKMTTALLDRLTHHCHIVETGNESIRFSRSTAAAKKRIKAREQARKDVSAQAEPAPF

 

Blast result :
Comments
ISThsp19 is 86% (ORFA) and 91% (ORFB) aa similar to ISCARN16.
References
1] ISfinder annotation (2009)