ISThsp19
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 2657 bp
Ends
IR Length : 23/28
IRL : TGTTGGCGCCGACCGAAAACTGAGCCACTTATGAGGGTAGTGCCGACCCA
IRR : TGTCGGCGCCGATTCAAATTTGAGCCACCGTGCCGACTGAATATTGAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAACGGGGTCGAGCTACGG | CGCAACACATCATCGCGGGT | 0 |
DNA sequence
TGTTGGCGCCGACCGAAAACTGAGCCACTTATGAGGGTAGTGCCGACCCAAAACTGAGCCAGGTGAACGACCTACTCTGCTGCTTTTTTGAGCAGCAGAG
GACCAGGAGTGATCACCATGGACATGATTGGCAGGATCCGGCATTTGCATGCCCGGAAGAACAAATCGGAGCGCGAGATTGCGCGCATGACAGGGCTCTC
GCGCAACACGGTTGCGAAGTGGTTGCACGGCGAGGTGGACGGCCCACCGAAGTACCGGCGCGGAGAGCAGCCCAACAAGCTCACGGCGTTCCACGACGCG
CTCAGGCAAGCGTTGAAGGCCGACGCGCGGCGGCCCAAACACGAGCGGCGCACGGCCAAAGCGCTGTACGCCGAGATCAGGCGCGCGGGCTATGAGGGTG
GCTACACGCGGGTGACCGACTTCATCCGGGCGTGGCGCCAGGGCGAAGGCCAGGGGTCTGCGGTCAACGCTTTTGTGCCGCTGGCCTTCGAGCTGGGCGA
AGCCTTCCAGTTCGACTGGAGCGAGGAAGGCATGGTGATTGGCGGCATCTACTACCGGGTGCAGGTCTCCCACATGAAGCTGTGCGCCAGTCGGGCCTTC
TGGCTGGTGGCCTACCCCAGCCAGGGCCACGAGATGCTGTTCGATGCCCACACCCGGTCGTTCGCGGCGCTCGGCGGCGTGGCGCGCCGGGGCATCTATG
ACAACATGAAGACGGCCGTTGACAAGGTCAAGAAAGGCAAGGGACGCATCGTCAACGAGCGCTTTGCCACCATGTGCGCGCACTACCTGTACGACCCGGA
CTTCTGCAACGTGGCCAGTGGCTGGGAGAAAGGGGTGGTGGAGAAGAACGTGCAGGACAGCCGTCGGCGCATCTGGATCGACGCGGCCAAGATCAAGTTC
GGCAGCTTCAGCGAACTCAACGCCTGGCTGGGCCAGCGCTGCCGCGCGTTGTGGGACGAGGTGCGCCACCCCGAGCACACCCAGTTCAGCGTGGCCGAGA
TGCTCGAACACGAGCGCGCGCGCCTCATGCCCATGCCGGTGCCGTTCGATGGCTACGTCGAGAAACCCGCGCGGGTCTCCAGCACCTGTCTGGTGTCGGT
GGCGCGCAACCGCTATTCGGTGCCGTGCGAACGGGTGGGGCAGATAGTCAGCACACGGCTGTACCCGGGCAGCGTCGCCATCGTGGTCGACGACACCATC
GTGGCCCGCCACGACCGGCTCAGCAACGCGGGGGAGACCCGGTACGACTGGCAGCACTACATCCCGCTGCTGCAGAGGAAGCCTGGCGCGCTGAGGAACG
GCGCGCCTTTTGCCGACATGCCCGAGCCGCTGCAGCGACTGCGCCGTGGGCTGCTGCGCAACCCAGGCGGCGACCGGGTCATGGCGCAGGTGCTGGCGAT
CGTGCTCAGCGCCGGTCTGGATGCGGTGCTGGTGGCCATCGAACTGGCGCTGGAGAGCGGTCCACCGGGCAAGGTCAGTGTGGAGCATGTGGTCAATGTG
CTGAGCCGACTCAACGCGCAGCCGGTGCCGCCCACGGCGGCTACGCTGCTGAGAGTGAACACGCCGCCGCTGGTGAACACGGCGCGCTACGACAGCCTGC
GCTCGGACGCCGCGGGCGCCATCACCGAGGGAGCCGGCCATGAAGACTGATGTACTGCTCGAACTCAAGGCTCTGCGTCTGCACGGCATGGCCAGCGCGT
GGGCCGATCTGGTCGAGCAAGGCGGCGGCGAGGCAGGCGGTGTGGGCATCGAGTCCTCACGCTGGCTGATCGAGCATCTGCTGCAGGCCGAGGGCACAGA
CCGTGCGATGCGCTCGGTCAGTCACCAGATGCACGCGGCGAAGTTCCCGGTGCACCGCGACATGGCGGGCTTTGACTTCGAGGTCTCGCCGGTGGACCGC
AAGCTAGTGGAGACTCTGGCCACCACGGCCTTCACTGAGGAGGCGCACAACGTGGTGCTGGTGGGCGGGCCTGGCACTGGAAAGACCCATCTGGCCACGG
CCATGGGCGTCTCGGGCATCACCCGGCACGGCAAGCGGGTGCGGTTCTACTCCACGGTCGATCTGGTCAACGCACTGGAGCAGGAGAAGGCCCAAGGCAG
GGCCGGGCGCATCGCCACCAGCCTGCTGCGCATGGACCTGATCATTCTGGACGAGCTGGGCTATCTGCCGTTCAGCCAGGCCGGTGGGGCGTTGCTGTTC
CACCTGCTCAGCAAGCTGTACGAGCACACCAGCGTGATGCTCACGACCAACCTGGACTTCGCCGAATGGTCCAGCGTGTTCGGCGACGCGAAGATGACCA
CCGCACTGCTGGACCGGCTCACGCACCACTGCCACATCGTGGAAACAGGCAACGAGTCGATCCGGTTTAGCCGCAGCACGGCTGCAGCCAAGAAGCGAAT
CAAGGCCCGCGAGCAGGCGCGCAAGGACGTCTCGGCGCAGGCAGAACCCGCCCCATTCTGAGCACGCTCCGCGATGGGCAAGCCGCTACGGGCTACGCCC
TGCGCGGCTTGCCCATCGGCTTCAACACAACAACAAGGAGGTCCCCGAACCAGCACAGCCCCTACACTTATCCACAGCCGACCCTCTCAAAATCGGCTTC
CACCCCTGGCTCAATATTCAGTCGGCACGGTGGCTCAAATTTGAATCGGCGCCGACA
GACCAGGAGTGATCACCATGGACATGATTGGCAGGATCCGGCATTTGCATGCCCGGAAGAACAAATCGGAGCGCGAGATTGCGCGCATGACAGGGCTCTC
GCGCAACACGGTTGCGAAGTGGTTGCACGGCGAGGTGGACGGCCCACCGAAGTACCGGCGCGGAGAGCAGCCCAACAAGCTCACGGCGTTCCACGACGCG
CTCAGGCAAGCGTTGAAGGCCGACGCGCGGCGGCCCAAACACGAGCGGCGCACGGCCAAAGCGCTGTACGCCGAGATCAGGCGCGCGGGCTATGAGGGTG
GCTACACGCGGGTGACCGACTTCATCCGGGCGTGGCGCCAGGGCGAAGGCCAGGGGTCTGCGGTCAACGCTTTTGTGCCGCTGGCCTTCGAGCTGGGCGA
AGCCTTCCAGTTCGACTGGAGCGAGGAAGGCATGGTGATTGGCGGCATCTACTACCGGGTGCAGGTCTCCCACATGAAGCTGTGCGCCAGTCGGGCCTTC
TGGCTGGTGGCCTACCCCAGCCAGGGCCACGAGATGCTGTTCGATGCCCACACCCGGTCGTTCGCGGCGCTCGGCGGCGTGGCGCGCCGGGGCATCTATG
ACAACATGAAGACGGCCGTTGACAAGGTCAAGAAAGGCAAGGGACGCATCGTCAACGAGCGCTTTGCCACCATGTGCGCGCACTACCTGTACGACCCGGA
CTTCTGCAACGTGGCCAGTGGCTGGGAGAAAGGGGTGGTGGAGAAGAACGTGCAGGACAGCCGTCGGCGCATCTGGATCGACGCGGCCAAGATCAAGTTC
GGCAGCTTCAGCGAACTCAACGCCTGGCTGGGCCAGCGCTGCCGCGCGTTGTGGGACGAGGTGCGCCACCCCGAGCACACCCAGTTCAGCGTGGCCGAGA
TGCTCGAACACGAGCGCGCGCGCCTCATGCCCATGCCGGTGCCGTTCGATGGCTACGTCGAGAAACCCGCGCGGGTCTCCAGCACCTGTCTGGTGTCGGT
GGCGCGCAACCGCTATTCGGTGCCGTGCGAACGGGTGGGGCAGATAGTCAGCACACGGCTGTACCCGGGCAGCGTCGCCATCGTGGTCGACGACACCATC
GTGGCCCGCCACGACCGGCTCAGCAACGCGGGGGAGACCCGGTACGACTGGCAGCACTACATCCCGCTGCTGCAGAGGAAGCCTGGCGCGCTGAGGAACG
GCGCGCCTTTTGCCGACATGCCCGAGCCGCTGCAGCGACTGCGCCGTGGGCTGCTGCGCAACCCAGGCGGCGACCGGGTCATGGCGCAGGTGCTGGCGAT
CGTGCTCAGCGCCGGTCTGGATGCGGTGCTGGTGGCCATCGAACTGGCGCTGGAGAGCGGTCCACCGGGCAAGGTCAGTGTGGAGCATGTGGTCAATGTG
CTGAGCCGACTCAACGCGCAGCCGGTGCCGCCCACGGCGGCTACGCTGCTGAGAGTGAACACGCCGCCGCTGGTGAACACGGCGCGCTACGACAGCCTGC
GCTCGGACGCCGCGGGCGCCATCACCGAGGGAGCCGGCCATGAAGACTGATGTACTGCTCGAACTCAAGGCTCTGCGTCTGCACGGCATGGCCAGCGCGT
GGGCCGATCTGGTCGAGCAAGGCGGCGGCGAGGCAGGCGGTGTGGGCATCGAGTCCTCACGCTGGCTGATCGAGCATCTGCTGCAGGCCGAGGGCACAGA
CCGTGCGATGCGCTCGGTCAGTCACCAGATGCACGCGGCGAAGTTCCCGGTGCACCGCGACATGGCGGGCTTTGACTTCGAGGTCTCGCCGGTGGACCGC
AAGCTAGTGGAGACTCTGGCCACCACGGCCTTCACTGAGGAGGCGCACAACGTGGTGCTGGTGGGCGGGCCTGGCACTGGAAAGACCCATCTGGCCACGG
CCATGGGCGTCTCGGGCATCACCCGGCACGGCAAGCGGGTGCGGTTCTACTCCACGGTCGATCTGGTCAACGCACTGGAGCAGGAGAAGGCCCAAGGCAG
GGCCGGGCGCATCGCCACCAGCCTGCTGCGCATGGACCTGATCATTCTGGACGAGCTGGGCTATCTGCCGTTCAGCCAGGCCGGTGGGGCGTTGCTGTTC
CACCTGCTCAGCAAGCTGTACGAGCACACCAGCGTGATGCTCACGACCAACCTGGACTTCGCCGAATGGTCCAGCGTGTTCGGCGACGCGAAGATGACCA
CCGCACTGCTGGACCGGCTCACGCACCACTGCCACATCGTGGAAACAGGCAACGAGTCGATCCGGTTTAGCCGCAGCACGGCTGCAGCCAAGAAGCGAAT
CAAGGCCCGCGAGCAGGCGCGCAAGGACGTCTCGGCGCAGGCAGAACCCGCCCCATTCTGAGCACGCTCCGCGATGGGCAAGCCGCTACGGGCTACGCCC
TGCGCGGCTTGCCCATCGGCTTCAACACAACAACAAGGAGGTCCCCGAACCAGCACAGCCCCTACACTTATCCACAGCCGACCCTCTCAAAATCGGCTTC
CACCCCTGGCTCAATATTCAGTCGGCACGGTGGCTCAAATTTGAATCGGCGCCGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 118 | 1650 | + | No |
Chemistry : DDE
ORF sequence :
MDMIGRIRHLHARKNKSEREIARMTGLSRNTVAKWLHGEVDGPPKYRRGEQPNKLTAFHDALRQALKADARRPKHERRTAKALYAEIRRAGYEGGYTRVT
DFIRAWRQGEGQGSAVNAFVPLAFELGEAFQFDWSEEGMVIGGIYYRVQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDKVKKGKGRIVNERFATMCAHYLYDPDFCNVASGWEKGVVEKNVQDSRRRIWIDAAKIKFGSFSELNAWLGQRCRALWDEVRHPEHTQFSVAEMLEHER
ARLMPMPVPFDGYVEKPARVSSTCLVSVARNRYSVPCERVGQIVSTRLYPGSVAIVVDDTIVARHDRLSNAGETRYDWQHYIPLLQRKPGALRNGAPFAD
MPEPLQRLRRGLLRNPGGDRVMAQVLAIVLSAGLDAVLVAIELALESGPPGKVSVEHVVNVLSRLNAQPVPPTAATLLRVNTPPLVNTARYDSLRSDAAG
AITEGAGHED
DFIRAWRQGEGQGSAVNAFVPLAFELGEAFQFDWSEEGMVIGGIYYRVQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDKVKKGKGRIVNERFATMCAHYLYDPDFCNVASGWEKGVVEKNVQDSRRRIWIDAAKIKFGSFSELNAWLGQRCRALWDEVRHPEHTQFSVAEMLEHER
ARLMPMPVPFDGYVEKPARVSSTCLVSVARNRYSVPCERVGQIVSTRLYPGSVAIVVDDTIVARHDRLSNAGETRYDWQHYIPLLQRKPGALRNGAPFAD
MPEPLQRLRRGLLRNPGGDRVMAQVLAIVLSAGLDAVLVAIELALESGPPGKVSVEHVVNVLSRLNAQPVPPTAATLLRVNTPPLVNTARYDSLRSDAAG
AITEGAGHED
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 1640 | 2461 | + | No |
AG : IS21 helper
ORF sequence :
MKTDVLLELKALRLHGMASAWADLVEQGGGEAGGVGIESSRWLIEHLLQAEGTDRAMRSVSHQMHAAKFPVHRDMAGFDFEVSPVDRKLVETLATTAFTE
EAHNVVLVGGPGTGKTHLATAMGVSGITRHGKRVRFYSTVDLVNALEQEKAQGRAGRIATSLLRMDLIILDELGYLPFSQAGGALLFHLLSKLYEHTSVM
LTTNLDFAEWSSVFGDAKMTTALLDRLTHHCHIVETGNESIRFSRSTAAAKKRIKAREQARKDVSAQAEPAPF
EAHNVVLVGGPGTGKTHLATAMGVSGITRHGKRVRFYSTVDLVNALEQEKAQGRAGRIATSLLRMDLIILDELGYLPFSQAGGALLFHLLSKLYEHTSVM
LTTNLDFAEWSSVFGDAKMTTALLDRLTHHCHIVETGNESIRFSRSTAAAKKRIKAREQARKDVSAQAEPAPF
Blast result :
Comments
ISThsp19 is 86% (ORFA) and 91% (ORFB) aa similar to ISCARN16.
References
1] ISfinder annotation (2009)