ISThsp18

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1330 bp

Ends


IR Length : 17/18

IRL : CAGGCTGTTGAAGAACTGGCGCGTCGGGCCCGGATCGGCGAGGATGCGGG
IRR : CAGGCCGTTGAAGACCTGATGGACGGACGAACTTCAGCCTCTTGAATCGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGTGTTAACACTAATTGACTTAGGCGTCTAGGAGGCTGTCGG4

DNA sequence

CAGGCTGTTGAAGAACTGGCGCGTCGGGCCCGGATCGGCGAGGATGCGGGCAGACGACGCGAGAGGTTGAGGGACGAAGGATGCGAGGAGCCGACAGCTA
CAACGAGGCCTTGTTCAGCACGGTGAGGCTCGACGAGTTCGTGCCGGCCAGCCATCCGCTGCGCCCGATCCGCACCTGGCTGAATGAGGCGCTGGCCAAG
ATGGATGCCAAGTTCTCGGCGATGTACGAGGCCGACGTGAAGGGCGGCCGGCCGAGCATCGCGCCCGAGAAGCTCATGCGGGCGATGCTGCTGCAGGTGC
TGTACAGCATCCGCAGCGAGCGCCAGCTCGTCGAGCAGATTTCCTACAACCTGCTGTTCCGATGGTTCGTGGGTCTGTCCATCGAGGACACGGTGTGGAA
CCACTCCGTGTTCAGCAAGAACCGCGACCGTCTGATCGAGTTCGATGCGGTCACCGAACTGTTCAACGCCACGGTCGAGATGGCGGCCACGAAGGGCCTG
CTGTCGGGCGAGCACTTCAGCGTCGACGGAACGCTGATCCAGGCCTGGGCCAGCCACAAGAGCGTGAGGCGCAAGGACGGCAGCGACGACGGTCGGCCTC
CCGAGAACTGGCATGGCGACAAGCGCAGCAACGCCACGCACGCCTCGGCGACCGACCCCGAGAGCAGGCTGTATCGCAAGAGCAGCGCAGCTCCGGCGCA
ACTGAGCTACCTCGGGCATGTGCTGACCGACAACCGACACGGTCTGGTGGTCAACGTGCGCGCCAGCACGGCCGATGGCTATGCCGAGCGCGACGTGGCC
GCGACCCTGCTCGGCGACGTCGCGCGCCCTGATGTGCGCGTGACGGTCGGCGCCGACAAGGGCTACGACACGCGCGGCTTCGTCAAGGCGTGCCGGGAGA
TGAAGGTCACGCCCCATGTGGCGCGCAACACGCGCCGAACGGGCGGCAGCGCGATCGATGGCCGCACGACTCGGCACGGGGGCTACGCGATGAGCCAGCG
CCGGCGCAAGTGCATCGAGCAATGCTTCGGCTGGGGCAAGACCATCGGCCCGATCCGCCAGGTGATGGTGCGGAGCCTGGCCAAGGTGGATCAGTTGTTC
ACCCTGACGATGGCGGCCTACAACCTCACGCGGCTGCGCTCCTTGGCCGCATTGCGTCCGCAGGTGGTGTGATGAGGGCGCAAACCGTGGGAATCGCCAT
CCTGCGCGCCCAGCAAGGCCCGTTTCCGGTCGGAACTGGACGGCCTGCTCGGAAATTGAGCACTCGGTGAGCGTCATCATGCGATTCAAGAGGCTGAAGT
TCGTCCGTCCATCAGGTCTTCAACGGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp363 aa811172+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGADSYNEALFSTVRLDEFVPASHPLRPIRTWLNEALAKMDAKFSAMYEADVKGGRPSIAPEKLMRAMLLQVLYSIRSERQLVEQISYNLLFRWFVGLS
IEDTVWNHSVFSKNRDRLIEFDAVTELFNATVEMAATKGLLSGEHFSVDGTLIQAWASHKSVRRKDGSDDGRPPENWHGDKRSNATHASATDPESRLYRK
SSAAPAQLSYLGHVLTDNRHGLVVNVRASTADGYAERDVAATLLGDVARPDVRVTVGADKGYDTRGFVKACREMKVTPHVARNTRRTGGSAIDGRTTRHG
GYAMSQRRRKCIEQCFGWGKTIGPIRQVMVRSLAKVDQLFTLTMAAYNLTRLRSLAALRPQVV

 

Blast result :
Comments
ISThsp18 is 76% aa similar to ISRme1.
References
1] ISfinder annotation (2009)