ISThsp18
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1330 bp
Ends
IR Length : 17/18
IRL : CAGGCTGTTGAAGAACTGGCGCGTCGGGCCCGGATCGGCGAGGATGCGGG
IRR : CAGGCCGTTGAAGACCTGATGGACGGACGAACTTCAGCCTCTTGAATCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGTGTTAACACTAATTGAC | TTAG | GCGTCTAGGAGGCTGTCGG | 4 |
DNA sequence
CAGGCTGTTGAAGAACTGGCGCGTCGGGCCCGGATCGGCGAGGATGCGGGCAGACGACGCGAGAGGTTGAGGGACGAAGGATGCGAGGAGCCGACAGCTA
CAACGAGGCCTTGTTCAGCACGGTGAGGCTCGACGAGTTCGTGCCGGCCAGCCATCCGCTGCGCCCGATCCGCACCTGGCTGAATGAGGCGCTGGCCAAG
ATGGATGCCAAGTTCTCGGCGATGTACGAGGCCGACGTGAAGGGCGGCCGGCCGAGCATCGCGCCCGAGAAGCTCATGCGGGCGATGCTGCTGCAGGTGC
TGTACAGCATCCGCAGCGAGCGCCAGCTCGTCGAGCAGATTTCCTACAACCTGCTGTTCCGATGGTTCGTGGGTCTGTCCATCGAGGACACGGTGTGGAA
CCACTCCGTGTTCAGCAAGAACCGCGACCGTCTGATCGAGTTCGATGCGGTCACCGAACTGTTCAACGCCACGGTCGAGATGGCGGCCACGAAGGGCCTG
CTGTCGGGCGAGCACTTCAGCGTCGACGGAACGCTGATCCAGGCCTGGGCCAGCCACAAGAGCGTGAGGCGCAAGGACGGCAGCGACGACGGTCGGCCTC
CCGAGAACTGGCATGGCGACAAGCGCAGCAACGCCACGCACGCCTCGGCGACCGACCCCGAGAGCAGGCTGTATCGCAAGAGCAGCGCAGCTCCGGCGCA
ACTGAGCTACCTCGGGCATGTGCTGACCGACAACCGACACGGTCTGGTGGTCAACGTGCGCGCCAGCACGGCCGATGGCTATGCCGAGCGCGACGTGGCC
GCGACCCTGCTCGGCGACGTCGCGCGCCCTGATGTGCGCGTGACGGTCGGCGCCGACAAGGGCTACGACACGCGCGGCTTCGTCAAGGCGTGCCGGGAGA
TGAAGGTCACGCCCCATGTGGCGCGCAACACGCGCCGAACGGGCGGCAGCGCGATCGATGGCCGCACGACTCGGCACGGGGGCTACGCGATGAGCCAGCG
CCGGCGCAAGTGCATCGAGCAATGCTTCGGCTGGGGCAAGACCATCGGCCCGATCCGCCAGGTGATGGTGCGGAGCCTGGCCAAGGTGGATCAGTTGTTC
ACCCTGACGATGGCGGCCTACAACCTCACGCGGCTGCGCTCCTTGGCCGCATTGCGTCCGCAGGTGGTGTGATGAGGGCGCAAACCGTGGGAATCGCCAT
CCTGCGCGCCCAGCAAGGCCCGTTTCCGGTCGGAACTGGACGGCCTGCTCGGAAATTGAGCACTCGGTGAGCGTCATCATGCGATTCAAGAGGCTGAAGT
TCGTCCGTCCATCAGGTCTTCAACGGCCTG
CAACGAGGCCTTGTTCAGCACGGTGAGGCTCGACGAGTTCGTGCCGGCCAGCCATCCGCTGCGCCCGATCCGCACCTGGCTGAATGAGGCGCTGGCCAAG
ATGGATGCCAAGTTCTCGGCGATGTACGAGGCCGACGTGAAGGGCGGCCGGCCGAGCATCGCGCCCGAGAAGCTCATGCGGGCGATGCTGCTGCAGGTGC
TGTACAGCATCCGCAGCGAGCGCCAGCTCGTCGAGCAGATTTCCTACAACCTGCTGTTCCGATGGTTCGTGGGTCTGTCCATCGAGGACACGGTGTGGAA
CCACTCCGTGTTCAGCAAGAACCGCGACCGTCTGATCGAGTTCGATGCGGTCACCGAACTGTTCAACGCCACGGTCGAGATGGCGGCCACGAAGGGCCTG
CTGTCGGGCGAGCACTTCAGCGTCGACGGAACGCTGATCCAGGCCTGGGCCAGCCACAAGAGCGTGAGGCGCAAGGACGGCAGCGACGACGGTCGGCCTC
CCGAGAACTGGCATGGCGACAAGCGCAGCAACGCCACGCACGCCTCGGCGACCGACCCCGAGAGCAGGCTGTATCGCAAGAGCAGCGCAGCTCCGGCGCA
ACTGAGCTACCTCGGGCATGTGCTGACCGACAACCGACACGGTCTGGTGGTCAACGTGCGCGCCAGCACGGCCGATGGCTATGCCGAGCGCGACGTGGCC
GCGACCCTGCTCGGCGACGTCGCGCGCCCTGATGTGCGCGTGACGGTCGGCGCCGACAAGGGCTACGACACGCGCGGCTTCGTCAAGGCGTGCCGGGAGA
TGAAGGTCACGCCCCATGTGGCGCGCAACACGCGCCGAACGGGCGGCAGCGCGATCGATGGCCGCACGACTCGGCACGGGGGCTACGCGATGAGCCAGCG
CCGGCGCAAGTGCATCGAGCAATGCTTCGGCTGGGGCAAGACCATCGGCCCGATCCGCCAGGTGATGGTGCGGAGCCTGGCCAAGGTGGATCAGTTGTTC
ACCCTGACGATGGCGGCCTACAACCTCACGCGGCTGCGCTCCTTGGCCGCATTGCGTCCGCAGGTGGTGTGATGAGGGCGCAAACCGTGGGAATCGCCAT
CCTGCGCGCCCAGCAAGGCCCGTTTCCGGTCGGAACTGGACGGCCTGCTCGGAAATTGAGCACTCGGTGAGCGTCATCATGCGATTCAAGAGGCTGAAGT
TCGTCCGTCCATCAGGTCTTCAACGGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1092 bp | 363 aa | 81 | 1172 | + | No |
Chemistry : DDE
ORF sequence :
MRGADSYNEALFSTVRLDEFVPASHPLRPIRTWLNEALAKMDAKFSAMYEADVKGGRPSIAPEKLMRAMLLQVLYSIRSERQLVEQISYNLLFRWFVGLS
IEDTVWNHSVFSKNRDRLIEFDAVTELFNATVEMAATKGLLSGEHFSVDGTLIQAWASHKSVRRKDGSDDGRPPENWHGDKRSNATHASATDPESRLYRK
SSAAPAQLSYLGHVLTDNRHGLVVNVRASTADGYAERDVAATLLGDVARPDVRVTVGADKGYDTRGFVKACREMKVTPHVARNTRRTGGSAIDGRTTRHG
GYAMSQRRRKCIEQCFGWGKTIGPIRQVMVRSLAKVDQLFTLTMAAYNLTRLRSLAALRPQVV
IEDTVWNHSVFSKNRDRLIEFDAVTELFNATVEMAATKGLLSGEHFSVDGTLIQAWASHKSVRRKDGSDDGRPPENWHGDKRSNATHASATDPESRLYRK
SSAAPAQLSYLGHVLTDNRHGLVVNVRASTADGYAERDVAATLLGDVARPDVRVTVGADKGYDTRGFVKACREMKVTPHVARNTRRTGGSAIDGRTTRHG
GYAMSQRRRKCIEQCFGWGKTIGPIRQVMVRSLAKVDQLFTLTMAAYNLTRLRSLAALRPQVV
Blast result :
Comments
ISThsp18 is 76% aa similar to ISRme1.
References
1] ISfinder annotation (2009)