ISThsp17
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1044 bp
Ends
IR Length : 24/25
IRL : GGCGCTGTTCGCGTTAGCGGTTGATTTCGGTACCATCACCCTCTCGACAC
IRR : GGCGCTGTTCGCGTTAGAGGTTGATGACCTGCTTTCCGAGGGCCGAGGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTCCCGCAAGAGC | AACAAGTC | AGCAACGAAATGGTGC | 8 |
DNA sequence
GGCGCTGTTCGCGTTAGCGGTTGATTTCGGTACCATCACCCTCTCGACACGAGGGGGTGAGCATGCGAAGCACGGCCTTCCAGCGGCTGCTGGAGTCCAT
GGACAAGCTGTCCATGGCGCAGATAGAGCGCCTCGGCGATGCGCTGAAGGCCGCCCGCTCCCGGCGAGCCGGCCTGGAAGTGCTCGAGAAGGCGCGCCCT
GTGGCCTGCCGCCGCTGCGGCAGCCTCCGAGTGGTGCGCAACGGGCACCGTGGCGAGCTGCAGCGCTACCTGTGCCGCGACTGCGGCAAGACGTCCAACG
CGACGACCGACACGCCCTTGGCGCGACTGCGCCGGCGTGAGACCTTCGAGGCGTACGCCAGGTGCTTGGCCAAGGGCTTCACGGTGCGCCAGGCCGCCAA
GGCGTGTTCTGTGTCCGTCAGCACCGCGCACCGCTGGCGCCTGCGCTTCTTGGAGAAGGTCGTCGAGCATCAGCCCAAGGCCCTGAGCGGGCTCCTGGAG
GTCGACGAGACGTACTTCCGCATCTCCCACAAGGGTTCGAGGAGCCTCAAGCGCCCACCGCGGCATCGTGGCGGCGAAGGCGCCGGCCGCGGACGCAAGG
CCAGCGAGTGGGCCCCGGTGCTCGTGGGGCGCCTACGCGGGCAGCGCTACACCACCGACAAGCTGTTGACCCGCGTGACGGCCGCGGAGGTGACGCGCGC
ATTGCGCGACGTCGTGCGACGCGGACAGACGGTCGTGTGCACCGACGGCGGCTCGGCGTTCCTGAACCTGGAGAAGGACCTCGGCGTTCCGGCCAAGAGC
CTGGTCGTGGGCTACGACGGCCATGTCATGGACGGCGTGTACCACGTGCAATCGGCCAATAGCTACCACGAGCGGCTCAAGTCCTGGGTCAATCGCCAGC
TACGCGGCGTGGCGACCAAGAACCTGCCGCTCTACCTGGCCTGGATGCGCTTGCGCGCCTGGGGCGCCGGCGGCGTCGAGCCCCGCGACATCCTCACCTC
GGCCCTCGGAAAGCAGGTCATCAACCTCTAACGCGAACAGCGCC
GGACAAGCTGTCCATGGCGCAGATAGAGCGCCTCGGCGATGCGCTGAAGGCCGCCCGCTCCCGGCGAGCCGGCCTGGAAGTGCTCGAGAAGGCGCGCCCT
GTGGCCTGCCGCCGCTGCGGCAGCCTCCGAGTGGTGCGCAACGGGCACCGTGGCGAGCTGCAGCGCTACCTGTGCCGCGACTGCGGCAAGACGTCCAACG
CGACGACCGACACGCCCTTGGCGCGACTGCGCCGGCGTGAGACCTTCGAGGCGTACGCCAGGTGCTTGGCCAAGGGCTTCACGGTGCGCCAGGCCGCCAA
GGCGTGTTCTGTGTCCGTCAGCACCGCGCACCGCTGGCGCCTGCGCTTCTTGGAGAAGGTCGTCGAGCATCAGCCCAAGGCCCTGAGCGGGCTCCTGGAG
GTCGACGAGACGTACTTCCGCATCTCCCACAAGGGTTCGAGGAGCCTCAAGCGCCCACCGCGGCATCGTGGCGGCGAAGGCGCCGGCCGCGGACGCAAGG
CCAGCGAGTGGGCCCCGGTGCTCGTGGGGCGCCTACGCGGGCAGCGCTACACCACCGACAAGCTGTTGACCCGCGTGACGGCCGCGGAGGTGACGCGCGC
ATTGCGCGACGTCGTGCGACGCGGACAGACGGTCGTGTGCACCGACGGCGGCTCGGCGTTCCTGAACCTGGAGAAGGACCTCGGCGTTCCGGCCAAGAGC
CTGGTCGTGGGCTACGACGGCCATGTCATGGACGGCGTGTACCACGTGCAATCGGCCAATAGCTACCACGAGCGGCTCAAGTCCTGGGTCAATCGCCAGC
TACGCGGCGTGGCGACCAAGAACCTGCCGCTCTACCTGGCCTGGATGCGCTTGCGCGCCTGGGGCGCCGGCGGCGTCGAGCCCCGCGACATCCTCACCTC
GGCCCTCGGAAAGCAGGTCATCAACCTCTAACGCGAACAGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 63 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MRSTAFQRLLESMDKLSMAQIERLGDALKAARSRRAGLEVLEKARPVACRRCGSLRVVRNGHRGELQRYLCRDCGKTSNATTDTPLARLRRRETFEAYAR
CLAKGFTVRQAAKACSVSVSTAHRWRLRFLEKVVEHQPKALSGLLEVDETYFRISHKGSRSLKRPPRHRGGEGAGRGRKASEWAPVLVGRLRGQRYTTDK
LLTRVTAAEVTRALRDVVRRGQTVVCTDGGSAFLNLEKDLGVPAKSLVVGYDGHVMDGVYHVQSANSYHERLKSWVNRQLRGVATKNLPLYLAWMRLRAW
GAGGVEPRDILTSALGKQVINL
CLAKGFTVRQAAKACSVSVSTAHRWRLRFLEKVVEHQPKALSGLLEVDETYFRISHKGSRSLKRPPRHRGGEGAGRGRKASEWAPVLVGRLRGQRYTTDK
LLTRVTAAEVTRALRDVVRRGQTVVCTDGGSAFLNLEKDLGVPAKSLVVGYDGHVMDGVYHVQSANSYHERLKSWVNRQLRGVATKNLPLYLAWMRLRAW
GAGGVEPRDILTSALGKQVINL
Blast result :
Comments
ISThsp17 is 64% aa similar to ISCARN29.
References
1] ISfinder annotation (2009)