ISThsp17

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1044 bp

Ends


IR Length : 24/25

IRL : GGCGCTGTTCGCGTTAGCGGTTGATTTCGGTACCATCACCCTCTCGACAC
IRR : GGCGCTGTTCGCGTTAGAGGTTGATGACCTGCTTTCCGAGGGCCGAGGTG

Insertion site


Left flankDirect repeatRight flankDR Length
AATTCCCGCAAGAGCAACAAGTCAGCAACGAAATGGTGC8

DNA sequence

GGCGCTGTTCGCGTTAGCGGTTGATTTCGGTACCATCACCCTCTCGACACGAGGGGGTGAGCATGCGAAGCACGGCCTTCCAGCGGCTGCTGGAGTCCAT
GGACAAGCTGTCCATGGCGCAGATAGAGCGCCTCGGCGATGCGCTGAAGGCCGCCCGCTCCCGGCGAGCCGGCCTGGAAGTGCTCGAGAAGGCGCGCCCT
GTGGCCTGCCGCCGCTGCGGCAGCCTCCGAGTGGTGCGCAACGGGCACCGTGGCGAGCTGCAGCGCTACCTGTGCCGCGACTGCGGCAAGACGTCCAACG
CGACGACCGACACGCCCTTGGCGCGACTGCGCCGGCGTGAGACCTTCGAGGCGTACGCCAGGTGCTTGGCCAAGGGCTTCACGGTGCGCCAGGCCGCCAA
GGCGTGTTCTGTGTCCGTCAGCACCGCGCACCGCTGGCGCCTGCGCTTCTTGGAGAAGGTCGTCGAGCATCAGCCCAAGGCCCTGAGCGGGCTCCTGGAG
GTCGACGAGACGTACTTCCGCATCTCCCACAAGGGTTCGAGGAGCCTCAAGCGCCCACCGCGGCATCGTGGCGGCGAAGGCGCCGGCCGCGGACGCAAGG
CCAGCGAGTGGGCCCCGGTGCTCGTGGGGCGCCTACGCGGGCAGCGCTACACCACCGACAAGCTGTTGACCCGCGTGACGGCCGCGGAGGTGACGCGCGC
ATTGCGCGACGTCGTGCGACGCGGACAGACGGTCGTGTGCACCGACGGCGGCTCGGCGTTCCTGAACCTGGAGAAGGACCTCGGCGTTCCGGCCAAGAGC
CTGGTCGTGGGCTACGACGGCCATGTCATGGACGGCGTGTACCACGTGCAATCGGCCAATAGCTACCACGAGCGGCTCAAGTCCTGGGTCAATCGCCAGC
TACGCGGCGTGGCGACCAAGAACCTGCCGCTCTACCTGGCCTGGATGCGCTTGCGCGCCTGGGGCGCCGGCGGCGTCGAGCCCCGCGACATCCTCACCTC
GGCCCTCGGAAAGCAGGTCATCAACCTCTAACGCGAACAGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa631031+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRSTAFQRLLESMDKLSMAQIERLGDALKAARSRRAGLEVLEKARPVACRRCGSLRVVRNGHRGELQRYLCRDCGKTSNATTDTPLARLRRRETFEAYAR
CLAKGFTVRQAAKACSVSVSTAHRWRLRFLEKVVEHQPKALSGLLEVDETYFRISHKGSRSLKRPPRHRGGEGAGRGRKASEWAPVLVGRLRGQRYTTDK
LLTRVTAAEVTRALRDVVRRGQTVVCTDGGSAFLNLEKDLGVPAKSLVVGYDGHVMDGVYHVQSANSYHERLKSWVNRQLRGVATKNLPLYLAWMRLRAW
GAGGVEPRDILTSALGKQVINL

 

Blast result :
Comments
ISThsp17 is 64% aa similar to ISCARN29.
References
1] ISfinder annotation (2009)