ISThsp16

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1602 bp

Ends


IR Length : 14/15

IRL : GAGACTGTCGGACTTTGCGGTCTTCCGGATGAAGACGCTATCCGAGACAA
IRR : GAGGCTGTCGGACTTGAACCCGAGCGAATCCGATTGATCAGTGCGACGCG

Insertion site


Left flankDirect repeatRight flankDR Length
GCATTTTCTCGCAGCTAGACGCCTAACAGGCCG4

DNA sequence

GAGACTGTCGGACTTTGCGGTCTTCCGGATGAAGACGCTATCCGAGACAATTGCTGCTGCACAACCGAGAGCCCGAGCCGATGAGCCGCTTCGTCCCTGT
TGACCGAGACACCGCCTATCTGTTGCCACCGTCGGTGGACGAATGGCTGCCCACTGATCACTTGGCGCGCTTCGTGGTCGAAGTCATCGAGCAGCTTGAT
CTGGGCGATCTGGCCCGACAGTACGCAGGCCGGGGCTCGGCGGCGCACCATCCGGCGGTGCTGCTGGGCCTGCTGATTGACGGCTACGCCAACGGCGTGC
ACTCCAGCCGCAAGATCGAGCGGGCGACCTACGACTCGGTGGCGTTCCGCTTTGTTGCGGCCAATACCCACCCCGATCACGACACGCTGGCGACGTTCCG
CCGCCGCTTCTTGAAGGAGGTGGAGGCACTGTTCGTGCAGGTGCTGGTTCTGGCGCGCGAGATGAAGCTGCTCAAGCTCGGACACATCGCGCTGGATGGC
ACCAAGATCGACGCCAACGCCAGCAAGCACAAGGCCTTGTCGTGGGCTCATGCCAACAAGATCGAGGCGCAGCTGCGCCAGGAAGTACAAACGCTGCTGG
CGCTGGCAGAGAACAGCGACCGCGCGACGGTACCCGACGGCATGGATGTGCCGGCGGAGATCGCCCTGCGTGCAGATCGCTTGAGCGCAATCGCGCAGGC
CAAGGCCAAGATCGAGCAGCGCGCCAGCGAACGCCATCAGGTCGAGCAGCAGGAGTACGAGGCCAAGACCGCCAAGCGCCAAGCCCAGCGCGAGGCGGGC
AAGAAGCCGCGCGGCAAGGACCCTGAGCCGCCAGAGGCCGGCCCCCGGAGCAGCGATCAGGTCAACCTCACGGATGAAGAGTCGCGCATCATGCCCGTGT
CGGGTGGGGGCTTCGAGCAAAGCTACAACGCACAAGCCGGCGTGGACATCGCGACGATGATGGTGATCACCCAGCATGTGAGCCAGGCATCCAACGACAA
GCGCGAAGTTGTGCCTACGCTGCAGCAGATCCAAGCGTTACCCGCGGTGCTGGGCGAGGTGCACACGCTCATCACGGACAACGGCTTCTTCAGCCAAGCC
AACGTGATCGCGTGCAACGACGCGGGTATCGAGCCGCTGCTGGCGCTCAAGCGGGAGTCGCATCACACGCCGGTGATGGGGCGCTTTGCACCCGATGTGC
CCGAGCCCCAGACGACGGATCCGCTCGTGCAGATGGCACACCGCCTGGGCACGCAAGCAGGCCGAGCCCTGTACGGCCTGCGCAAGCAGACAGTGGAGCC
GGTGTTCGGCATCATCAAGCAAGTGATGGGTTGGCGCCAGATGAGCATGCGCGGGCTGGCCAAGGCACAAGGCGAATGGAGCTTGGTGACCATGGCTTGG
AACATCAAGCGCATGCACGTCCTGCGAGCCGCGTGAGGGCAATAGTGCGCCCCGACCACGCCAAAACCGAGTCCCCAGGCCGCCCCATGTGCCCTCACAG
TGTCTCGCCAACCATCGAGAGCGTTCGATCAGCGCGCCGCTGTCAAAAAAAACGCGTCGCACTGATCAATCGGATTCGCTCGGGTTCAAGTCCGACAGCC
TC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1356 bp451 aa811436+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRFVPVDRDTAYLLPPSVDEWLPTDHLARFVVEVIEQLDLGDLARQYAGRGSAAHHPAVLLGLLIDGYANGVHSSRKIERATYDSVAFRFVAANTHPDH
DTLATFRRRFLKEVEALFVQVLVLAREMKLLKLGHIALDGTKIDANASKHKALSWAHANKIEAQLRQEVQTLLALAENSDRATVPDGMDVPAEIALRADR
LSAIAQAKAKIEQRASERHQVEQQEYEAKTAKRQAQREAGKKPRGKDPEPPEAGPRSSDQVNLTDEESRIMPVSGGGFEQSYNAQAGVDIATMMVITQHV
SQASNDKREVVPTLQQIQALPAVLGEVHTLITDNGFFSQANVIACNDAGIEPLLALKRESHHTPVMGRFAPDVPEPQTTDPLVQMAHRLGTQAGRALYGL
RKQTVEPVFGIIKQVMGWRQMSMRGLAKAQGEWSLVTMAWNIKRMHVLRAA

 

Blast result :
Comments
ISThsp16 is 71% aa similar to ISCARN16.
References
1] ISfinder annotation (2009)