ISThsp16
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1602 bp
Ends
IR Length : 14/15
IRL : GAGACTGTCGGACTTTGCGGTCTTCCGGATGAAGACGCTATCCGAGACAA
IRR : GAGGCTGTCGGACTTGAACCCGAGCGAATCCGATTGATCAGTGCGACGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCATTTTCTCGCAG | CTAG | ACGCCTAACAGGCCG | 4 |
DNA sequence
GAGACTGTCGGACTTTGCGGTCTTCCGGATGAAGACGCTATCCGAGACAATTGCTGCTGCACAACCGAGAGCCCGAGCCGATGAGCCGCTTCGTCCCTGT
TGACCGAGACACCGCCTATCTGTTGCCACCGTCGGTGGACGAATGGCTGCCCACTGATCACTTGGCGCGCTTCGTGGTCGAAGTCATCGAGCAGCTTGAT
CTGGGCGATCTGGCCCGACAGTACGCAGGCCGGGGCTCGGCGGCGCACCATCCGGCGGTGCTGCTGGGCCTGCTGATTGACGGCTACGCCAACGGCGTGC
ACTCCAGCCGCAAGATCGAGCGGGCGACCTACGACTCGGTGGCGTTCCGCTTTGTTGCGGCCAATACCCACCCCGATCACGACACGCTGGCGACGTTCCG
CCGCCGCTTCTTGAAGGAGGTGGAGGCACTGTTCGTGCAGGTGCTGGTTCTGGCGCGCGAGATGAAGCTGCTCAAGCTCGGACACATCGCGCTGGATGGC
ACCAAGATCGACGCCAACGCCAGCAAGCACAAGGCCTTGTCGTGGGCTCATGCCAACAAGATCGAGGCGCAGCTGCGCCAGGAAGTACAAACGCTGCTGG
CGCTGGCAGAGAACAGCGACCGCGCGACGGTACCCGACGGCATGGATGTGCCGGCGGAGATCGCCCTGCGTGCAGATCGCTTGAGCGCAATCGCGCAGGC
CAAGGCCAAGATCGAGCAGCGCGCCAGCGAACGCCATCAGGTCGAGCAGCAGGAGTACGAGGCCAAGACCGCCAAGCGCCAAGCCCAGCGCGAGGCGGGC
AAGAAGCCGCGCGGCAAGGACCCTGAGCCGCCAGAGGCCGGCCCCCGGAGCAGCGATCAGGTCAACCTCACGGATGAAGAGTCGCGCATCATGCCCGTGT
CGGGTGGGGGCTTCGAGCAAAGCTACAACGCACAAGCCGGCGTGGACATCGCGACGATGATGGTGATCACCCAGCATGTGAGCCAGGCATCCAACGACAA
GCGCGAAGTTGTGCCTACGCTGCAGCAGATCCAAGCGTTACCCGCGGTGCTGGGCGAGGTGCACACGCTCATCACGGACAACGGCTTCTTCAGCCAAGCC
AACGTGATCGCGTGCAACGACGCGGGTATCGAGCCGCTGCTGGCGCTCAAGCGGGAGTCGCATCACACGCCGGTGATGGGGCGCTTTGCACCCGATGTGC
CCGAGCCCCAGACGACGGATCCGCTCGTGCAGATGGCACACCGCCTGGGCACGCAAGCAGGCCGAGCCCTGTACGGCCTGCGCAAGCAGACAGTGGAGCC
GGTGTTCGGCATCATCAAGCAAGTGATGGGTTGGCGCCAGATGAGCATGCGCGGGCTGGCCAAGGCACAAGGCGAATGGAGCTTGGTGACCATGGCTTGG
AACATCAAGCGCATGCACGTCCTGCGAGCCGCGTGAGGGCAATAGTGCGCCCCGACCACGCCAAAACCGAGTCCCCAGGCCGCCCCATGTGCCCTCACAG
TGTCTCGCCAACCATCGAGAGCGTTCGATCAGCGCGCCGCTGTCAAAAAAAACGCGTCGCACTGATCAATCGGATTCGCTCGGGTTCAAGTCCGACAGCC
TC
TGACCGAGACACCGCCTATCTGTTGCCACCGTCGGTGGACGAATGGCTGCCCACTGATCACTTGGCGCGCTTCGTGGTCGAAGTCATCGAGCAGCTTGAT
CTGGGCGATCTGGCCCGACAGTACGCAGGCCGGGGCTCGGCGGCGCACCATCCGGCGGTGCTGCTGGGCCTGCTGATTGACGGCTACGCCAACGGCGTGC
ACTCCAGCCGCAAGATCGAGCGGGCGACCTACGACTCGGTGGCGTTCCGCTTTGTTGCGGCCAATACCCACCCCGATCACGACACGCTGGCGACGTTCCG
CCGCCGCTTCTTGAAGGAGGTGGAGGCACTGTTCGTGCAGGTGCTGGTTCTGGCGCGCGAGATGAAGCTGCTCAAGCTCGGACACATCGCGCTGGATGGC
ACCAAGATCGACGCCAACGCCAGCAAGCACAAGGCCTTGTCGTGGGCTCATGCCAACAAGATCGAGGCGCAGCTGCGCCAGGAAGTACAAACGCTGCTGG
CGCTGGCAGAGAACAGCGACCGCGCGACGGTACCCGACGGCATGGATGTGCCGGCGGAGATCGCCCTGCGTGCAGATCGCTTGAGCGCAATCGCGCAGGC
CAAGGCCAAGATCGAGCAGCGCGCCAGCGAACGCCATCAGGTCGAGCAGCAGGAGTACGAGGCCAAGACCGCCAAGCGCCAAGCCCAGCGCGAGGCGGGC
AAGAAGCCGCGCGGCAAGGACCCTGAGCCGCCAGAGGCCGGCCCCCGGAGCAGCGATCAGGTCAACCTCACGGATGAAGAGTCGCGCATCATGCCCGTGT
CGGGTGGGGGCTTCGAGCAAAGCTACAACGCACAAGCCGGCGTGGACATCGCGACGATGATGGTGATCACCCAGCATGTGAGCCAGGCATCCAACGACAA
GCGCGAAGTTGTGCCTACGCTGCAGCAGATCCAAGCGTTACCCGCGGTGCTGGGCGAGGTGCACACGCTCATCACGGACAACGGCTTCTTCAGCCAAGCC
AACGTGATCGCGTGCAACGACGCGGGTATCGAGCCGCTGCTGGCGCTCAAGCGGGAGTCGCATCACACGCCGGTGATGGGGCGCTTTGCACCCGATGTGC
CCGAGCCCCAGACGACGGATCCGCTCGTGCAGATGGCACACCGCCTGGGCACGCAAGCAGGCCGAGCCCTGTACGGCCTGCGCAAGCAGACAGTGGAGCC
GGTGTTCGGCATCATCAAGCAAGTGATGGGTTGGCGCCAGATGAGCATGCGCGGGCTGGCCAAGGCACAAGGCGAATGGAGCTTGGTGACCATGGCTTGG
AACATCAAGCGCATGCACGTCCTGCGAGCCGCGTGAGGGCAATAGTGCGCCCCGACCACGCCAAAACCGAGTCCCCAGGCCGCCCCATGTGCCCTCACAG
TGTCTCGCCAACCATCGAGAGCGTTCGATCAGCGCGCCGCTGTCAAAAAAAACGCGTCGCACTGATCAATCGGATTCGCTCGGGTTCAAGTCCGACAGCC
TC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1356 bp | 451 aa | 81 | 1436 | + | No |
Chemistry : DDE
ORF sequence :
MSRFVPVDRDTAYLLPPSVDEWLPTDHLARFVVEVIEQLDLGDLARQYAGRGSAAHHPAVLLGLLIDGYANGVHSSRKIERATYDSVAFRFVAANTHPDH
DTLATFRRRFLKEVEALFVQVLVLAREMKLLKLGHIALDGTKIDANASKHKALSWAHANKIEAQLRQEVQTLLALAENSDRATVPDGMDVPAEIALRADR
LSAIAQAKAKIEQRASERHQVEQQEYEAKTAKRQAQREAGKKPRGKDPEPPEAGPRSSDQVNLTDEESRIMPVSGGGFEQSYNAQAGVDIATMMVITQHV
SQASNDKREVVPTLQQIQALPAVLGEVHTLITDNGFFSQANVIACNDAGIEPLLALKRESHHTPVMGRFAPDVPEPQTTDPLVQMAHRLGTQAGRALYGL
RKQTVEPVFGIIKQVMGWRQMSMRGLAKAQGEWSLVTMAWNIKRMHVLRAA
DTLATFRRRFLKEVEALFVQVLVLAREMKLLKLGHIALDGTKIDANASKHKALSWAHANKIEAQLRQEVQTLLALAENSDRATVPDGMDVPAEIALRADR
LSAIAQAKAKIEQRASERHQVEQQEYEAKTAKRQAQREAGKKPRGKDPEPPEAGPRSSDQVNLTDEESRIMPVSGGGFEQSYNAQAGVDIATMMVITQHV
SQASNDKREVVPTLQQIQALPAVLGEVHTLITDNGFFSQANVIACNDAGIEPLLALKRESHHTPVMGRFAPDVPEPQTTDPLVQMAHRLGTQAGRALYGL
RKQTVEPVFGIIKQVMGWRQMSMRGLAKAQGEWSLVTMAWNIKRMHVLRAA
Blast result :
Comments
ISThsp16 is 71% aa similar to ISCARN16.
References
1] ISfinder annotation (2009)