ISThsp15

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1482 bp

Ends


IR Length : 24/27

IRL : GTACAACATCCCTGAAATACCGTTACATAGAGAGGGGCATGAAGTAGACT
IRR : GTACAACATCCCTTAAATAGAGTTACAGCTCAGGATCAAGGTATGGCGCC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCCGGGCATTCCTGGGCCCTAGCCTGGATATTT2

DNA sequence

GTACAACATCCCTGAAATACCGTTACATAGAGAGGGGCATGAAGTAGACTGTTTGGCCATGAGTCGTGAGCGCGTGGCATCAGTCATCAAGTTGTCGAGG
AAGGATCAGGCGAAGCTGCGAGATACGCTGCGTCGGGGTACGGCGCCGCAGCGCGACGCGCTGCGAGCGCGGATCGCGTTGCTGCTCCACGATGGACACA
CGATCTCGTCGATCGCATCGACGTTGCAGGTGTCGCGGCCGACCGTGATGCGCTGGCGAGAGCGGCTTGCGCAATCGGGTGTGGAAGGCCTGCACGAGGG
GCTGCGCCCGGGCCGACCTCGACAGATTGACCCGGCGCAGCGTTTGCAACTGCTGGCGCTAGCGTGCGAGACCGGCGAGGATCGCGCCGGGACGCTGCCG
ACGCTGGATGAGTTGTGCGTGCGCGCAGTGGAGCGAGGCGTGGTCAAGCACATCAGCCGTAGCCACTTGCAGCGCATTTTGCAGGCTGGCGACGTGCGGC
CGCACCGCGTTCGGCAATGGTTGCATTCGCCCGACCCGCAATTCCGCGAGAAGGTCAACGCGATTTGCGCGCTGTACCGGCGCGCGCCCAAGGGCAGCGT
GGTGCTGAGCGTCGATGAGAAGACCGGCATCCAGGCCATCGAGCGCAAGCATGCGGATCGCCACGCGCAACCCGGGCGACTGCGCCGCCACGAATTCGAA
TACATCCGCCACGGTACACAGGCGCTGACCGCGGCGCTGGACGTGCATACCGGCCGTGTGCTGGGGCGCTGTACCGATCGCCGCACCCAGGCCGACCTCG
TGGCTTTCATGGAAGACGTCGCGCGCGCATATCCCAGCGGGCCCGTGCATGTCATCTGGGACAACCTCAATACCCATCGCGCCTGGGGCGTGTGGCAGGC
GTTCAATGCCCGACACGGCGGACGCTTCGTCTTTCACTACACCCCGCTGCATGCCAGTTGGGTCAACCAGATCGAGTTGCTGTTCGGCATCTACGCCCGC
CGGGTGCTGCGCCGTGCCAGCCACATCTCGGTGCACCATCTGCGCGAGCGCACCGAGGACTTCATTGCCCAGCGCAACCTCGATCCGCGACCGTTCCGCT
GGACGTTTGCAGGCTTCGAGTTGCAAACTGGGGAGCCTAGGCATCACGTCCATTGCTCTCGCCATGACCGCACCCCTCGTCCCCGACCCCGCCAGTGAAT
TGCAGGGCTTGCTCGCCCAGTTGACCGGGCACGCCGCCGCCCGAGTGCGCCGCTATGGCAAGCATCTGCTCATCCAGATGCAGCGCGACGAATCCCTCGA
CACCGTCGCCCGATTGACCGAGACAGGGCGCGACCACTACGTGGCTGCCTTTCGAACCCATTCAGGGCGTTGGGAGCCACTGCCCGCCTCCGGCAACCTG
CACCAAACCGCCGAGATCGTGGTCGCCATGCTGGCGCCATACCTTGATCCTGAGCTGTAACTCTATTTAAGGGATGTTGTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1140 bp379 aa591198+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRERVASVIKLSRKDQAKLRDTLRRGTAPQRDALRARIALLLHDGHTISSIASTLQVSRPTVMRWRERLAQSGVEGLHEGLRPGRPRQIDPAQRLQLLA
LACETGEDRAGTLPTLDELCVRAVERGVVKHISRSHLQRILQAGDVRPHRVRQWLHSPDPQFREKVNAICALYRRAPKGSVVLSVDEKTGIQAIERKHAD
RHAQPGRLRRHEFEYIRHGTQALTAALDVHTGRVLGRCTDRRTQADLVAFMEDVARAYPSGPVHVIWDNLNTHRAWGVWQAFNARHGGRFVFHYTPLHAS
WVNQIELLFGIYARRVLRRASHISVHHLRERTEDFIAQRNLDPRPFRWTFAGFELQTGEPRHHVHCSRHDRTPRPRPRQ

 

Blast result :
Comments
ISThsp15 is 53% aa similar to ISPpu2.
References
1] ISfinder annotation (2009)