ISThsp15
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1482 bp
Ends
IR Length : 24/27
IRL : GTACAACATCCCTGAAATACCGTTACATAGAGAGGGGCATGAAGTAGACT
IRR : GTACAACATCCCTTAAATAGAGTTACAGCTCAGGATCAAGGTATGGCGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCCGGGCATTCCTGGGCCC | TA | GCCTGGATATTT | 2 |
DNA sequence
GTACAACATCCCTGAAATACCGTTACATAGAGAGGGGCATGAAGTAGACTGTTTGGCCATGAGTCGTGAGCGCGTGGCATCAGTCATCAAGTTGTCGAGG
AAGGATCAGGCGAAGCTGCGAGATACGCTGCGTCGGGGTACGGCGCCGCAGCGCGACGCGCTGCGAGCGCGGATCGCGTTGCTGCTCCACGATGGACACA
CGATCTCGTCGATCGCATCGACGTTGCAGGTGTCGCGGCCGACCGTGATGCGCTGGCGAGAGCGGCTTGCGCAATCGGGTGTGGAAGGCCTGCACGAGGG
GCTGCGCCCGGGCCGACCTCGACAGATTGACCCGGCGCAGCGTTTGCAACTGCTGGCGCTAGCGTGCGAGACCGGCGAGGATCGCGCCGGGACGCTGCCG
ACGCTGGATGAGTTGTGCGTGCGCGCAGTGGAGCGAGGCGTGGTCAAGCACATCAGCCGTAGCCACTTGCAGCGCATTTTGCAGGCTGGCGACGTGCGGC
CGCACCGCGTTCGGCAATGGTTGCATTCGCCCGACCCGCAATTCCGCGAGAAGGTCAACGCGATTTGCGCGCTGTACCGGCGCGCGCCCAAGGGCAGCGT
GGTGCTGAGCGTCGATGAGAAGACCGGCATCCAGGCCATCGAGCGCAAGCATGCGGATCGCCACGCGCAACCCGGGCGACTGCGCCGCCACGAATTCGAA
TACATCCGCCACGGTACACAGGCGCTGACCGCGGCGCTGGACGTGCATACCGGCCGTGTGCTGGGGCGCTGTACCGATCGCCGCACCCAGGCCGACCTCG
TGGCTTTCATGGAAGACGTCGCGCGCGCATATCCCAGCGGGCCCGTGCATGTCATCTGGGACAACCTCAATACCCATCGCGCCTGGGGCGTGTGGCAGGC
GTTCAATGCCCGACACGGCGGACGCTTCGTCTTTCACTACACCCCGCTGCATGCCAGTTGGGTCAACCAGATCGAGTTGCTGTTCGGCATCTACGCCCGC
CGGGTGCTGCGCCGTGCCAGCCACATCTCGGTGCACCATCTGCGCGAGCGCACCGAGGACTTCATTGCCCAGCGCAACCTCGATCCGCGACCGTTCCGCT
GGACGTTTGCAGGCTTCGAGTTGCAAACTGGGGAGCCTAGGCATCACGTCCATTGCTCTCGCCATGACCGCACCCCTCGTCCCCGACCCCGCCAGTGAAT
TGCAGGGCTTGCTCGCCCAGTTGACCGGGCACGCCGCCGCCCGAGTGCGCCGCTATGGCAAGCATCTGCTCATCCAGATGCAGCGCGACGAATCCCTCGA
CACCGTCGCCCGATTGACCGAGACAGGGCGCGACCACTACGTGGCTGCCTTTCGAACCCATTCAGGGCGTTGGGAGCCACTGCCCGCCTCCGGCAACCTG
CACCAAACCGCCGAGATCGTGGTCGCCATGCTGGCGCCATACCTTGATCCTGAGCTGTAACTCTATTTAAGGGATGTTGTAC
AAGGATCAGGCGAAGCTGCGAGATACGCTGCGTCGGGGTACGGCGCCGCAGCGCGACGCGCTGCGAGCGCGGATCGCGTTGCTGCTCCACGATGGACACA
CGATCTCGTCGATCGCATCGACGTTGCAGGTGTCGCGGCCGACCGTGATGCGCTGGCGAGAGCGGCTTGCGCAATCGGGTGTGGAAGGCCTGCACGAGGG
GCTGCGCCCGGGCCGACCTCGACAGATTGACCCGGCGCAGCGTTTGCAACTGCTGGCGCTAGCGTGCGAGACCGGCGAGGATCGCGCCGGGACGCTGCCG
ACGCTGGATGAGTTGTGCGTGCGCGCAGTGGAGCGAGGCGTGGTCAAGCACATCAGCCGTAGCCACTTGCAGCGCATTTTGCAGGCTGGCGACGTGCGGC
CGCACCGCGTTCGGCAATGGTTGCATTCGCCCGACCCGCAATTCCGCGAGAAGGTCAACGCGATTTGCGCGCTGTACCGGCGCGCGCCCAAGGGCAGCGT
GGTGCTGAGCGTCGATGAGAAGACCGGCATCCAGGCCATCGAGCGCAAGCATGCGGATCGCCACGCGCAACCCGGGCGACTGCGCCGCCACGAATTCGAA
TACATCCGCCACGGTACACAGGCGCTGACCGCGGCGCTGGACGTGCATACCGGCCGTGTGCTGGGGCGCTGTACCGATCGCCGCACCCAGGCCGACCTCG
TGGCTTTCATGGAAGACGTCGCGCGCGCATATCCCAGCGGGCCCGTGCATGTCATCTGGGACAACCTCAATACCCATCGCGCCTGGGGCGTGTGGCAGGC
GTTCAATGCCCGACACGGCGGACGCTTCGTCTTTCACTACACCCCGCTGCATGCCAGTTGGGTCAACCAGATCGAGTTGCTGTTCGGCATCTACGCCCGC
CGGGTGCTGCGCCGTGCCAGCCACATCTCGGTGCACCATCTGCGCGAGCGCACCGAGGACTTCATTGCCCAGCGCAACCTCGATCCGCGACCGTTCCGCT
GGACGTTTGCAGGCTTCGAGTTGCAAACTGGGGAGCCTAGGCATCACGTCCATTGCTCTCGCCATGACCGCACCCCTCGTCCCCGACCCCGCCAGTGAAT
TGCAGGGCTTGCTCGCCCAGTTGACCGGGCACGCCGCCGCCCGAGTGCGCCGCTATGGCAAGCATCTGCTCATCCAGATGCAGCGCGACGAATCCCTCGA
CACCGTCGCCCGATTGACCGAGACAGGGCGCGACCACTACGTGGCTGCCTTTCGAACCCATTCAGGGCGTTGGGAGCCACTGCCCGCCTCCGGCAACCTG
CACCAAACCGCCGAGATCGTGGTCGCCATGCTGGCGCCATACCTTGATCCTGAGCTGTAACTCTATTTAAGGGATGTTGTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1140 bp | 379 aa | 59 | 1198 | + | No |
Chemistry : DDE
ORF sequence :
MSRERVASVIKLSRKDQAKLRDTLRRGTAPQRDALRARIALLLHDGHTISSIASTLQVSRPTVMRWRERLAQSGVEGLHEGLRPGRPRQIDPAQRLQLLA
LACETGEDRAGTLPTLDELCVRAVERGVVKHISRSHLQRILQAGDVRPHRVRQWLHSPDPQFREKVNAICALYRRAPKGSVVLSVDEKTGIQAIERKHAD
RHAQPGRLRRHEFEYIRHGTQALTAALDVHTGRVLGRCTDRRTQADLVAFMEDVARAYPSGPVHVIWDNLNTHRAWGVWQAFNARHGGRFVFHYTPLHAS
WVNQIELLFGIYARRVLRRASHISVHHLRERTEDFIAQRNLDPRPFRWTFAGFELQTGEPRHHVHCSRHDRTPRPRPRQ
LACETGEDRAGTLPTLDELCVRAVERGVVKHISRSHLQRILQAGDVRPHRVRQWLHSPDPQFREKVNAICALYRRAPKGSVVLSVDEKTGIQAIERKHAD
RHAQPGRLRRHEFEYIRHGTQALTAALDVHTGRVLGRCTDRRTQADLVAFMEDVARAYPSGPVHVIWDNLNTHRAWGVWQAFNARHGGRFVFHYTPLHAS
WVNQIELLFGIYARRVLRRASHISVHHLRERTEDFIAQRNLDPRPFRWTFAGFELQTGEPRHHVHCSRHDRTPRPRPRQ
Blast result :
Comments
ISThsp15 is 53% aa similar to ISPpu2.
References
1] ISfinder annotation (2009)