ISThsp14

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1302 bp

Ends


IR Length : 20/22

IRL : GGTTCATCGCGGAAAACCGTGGGGTTTTCAAGGCAGTTGATAATCTGACG
IRR : GGTTCATCGCGGGATACCGGGGAAGGCGGCGCGGATCTTGAGGAAGAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGGATGGCACCGGGGCGCTAAAAAAAACGGCCCCCAATCCATC8

DNA sequence

GGTTCATCGCGGAAAACCGTGGGGTTTTCAAGGCAGTTGATAATCTGACGACGCAAGGAAAGGTCATCGGAGGATAAATTGCTGGATCGCAAAGCATTGC
AAGCGCTGGGCTGCTGGACGGGCTACCGGGTTGAGCGAGTGGAATGGCCGGCGGAAGGCAGTCGGACGCTGGCGCTGCATCTCAAGCCGGTCAGCAAAGT
GATGATCTGCGAGGAGTGCGGCAAGCGTTGCCAGCAGGTTCACGAGACGACCGTTCGACGCATCCGGGATCTACCGCTGTTCGAGTACCGGGTCGAGCTT
CACGTACCGCGTCGCCGGGTTTGGTGCGACCACTGCGGTGGCCCCCGACTGGAGCGGTTGGAGTGGTTGGGACGCTATCAGCGGGTCACGGCGCGTTTTG
CCAAAGCCTGCGAGGTCTTGTTGAAAGCGGCCAACGTGCAGGCGGTGGCGCGGTTCTACGGTCTTGATTGGCACACGGTCAAAGCGATCGACAAGATGGG
CTTGGCGGCCAGTCTTGTCGAACCGGATTGGTCGCAGGTGCGTTATCTGGCGATGGATGAGTTCGCGCTCCACAAAGGCCACCGCTACGCGACAGTCGTC
GTCGAGCCGGTCAATCGACAAGTGCTGTGGATCGGACAAGGCCGTTCGCGGGAAACCGCCCGTGCCTTCTTTGAGCAGCTTCCGAAGGGCGTTGCTGAGC
GTATCGAAGCCGTCGCGATCGATATGACGACGGCTTACGAGCTGGAAATCAAGGCGAATTGCCCGCAGGCCGAAATCGTCTATGACCTGTTCCACGTCGT
AGCCAAGTACGGCCGGGAAGTGATCGACCGGGTGCGGGTGGATCAGGCCAATCAGCTGCGACATGACCGGCCGGCTCGAAAAGTCCTGAAATCCAGCCGC
TGGCTGCTGTTGCGCAATCGGCAGAACCTGAAACCAGAGCAAACCGTCCATCTCGACGAACTACTGGAGGCCAATCGGCCGTTACTCAGCGTTTATCTGC
TGCGCGACGAACTGAAACGGCTCTGGTTCCATCGTGATCCGGTTTCGGCCCAATCGGCCTGGGAGCAATGGGTCGAGCAAGCCCAGCAGAGCGGCATCGC
CGCCTTGAAGGCGTTTGCCGAGCGGCTGCAGGCCTACTGGCACGGCATCGTGGCTCGCTGCCGACACCCGCTCAACACCAGCATCGTCGAGGGCATCAAC
AACACCATCAAGGTCATCAAGCGTCGGGCTTACGGGTACCGCGACGAGGAATATTTCTTCCTCAAGATCCGCGCCGCCTTCCCCGGTATCCCGCGATGAA
CC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa791299+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

LLDRKALQALGCWTGYRVERVEWPAEGSRTLALHLKPVSKVMICEECGKRCQQVHETTVRRIRDLPLFEYRVELHVPRRRVWCDHCGGPRLERLEWLGRY
QRVTARFAKACEVLLKAANVQAVARFYGLDWHTVKAIDKMGLAASLVEPDWSQVRYLAMDEFALHKGHRYATVVVEPVNRQVLWIGQGRSRETARAFFEQ
LPKGVAERIEAVAIDMTTAYELEIKANCPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDRPARKVLKSSRWLLLRNRQNLKPEQTVHLDELLEANR
PLLSVYLLRDELKRLWFHRDPVSAQSAWEQWVEQAQQSGIAALKAFAERLQAYWHGIVARCRHPLNTSIVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR

 

Blast result :
Comments
ISThsp14 is 90% aa similar to ISRso15.
References
1] ISfinder annotation (2009)