ISThsp14
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1302 bp
Ends
IR Length : 20/22
IRL : GGTTCATCGCGGAAAACCGTGGGGTTTTCAAGGCAGTTGATAATCTGACG
IRR : GGTTCATCGCGGGATACCGGGGAAGGCGGCGCGGATCTTGAGGAAGAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGGATGGCACCGGGGCGC | TAAAAAAA | ACGGCCCCCAATCCATC | 8 |
DNA sequence
GGTTCATCGCGGAAAACCGTGGGGTTTTCAAGGCAGTTGATAATCTGACGACGCAAGGAAAGGTCATCGGAGGATAAATTGCTGGATCGCAAAGCATTGC
AAGCGCTGGGCTGCTGGACGGGCTACCGGGTTGAGCGAGTGGAATGGCCGGCGGAAGGCAGTCGGACGCTGGCGCTGCATCTCAAGCCGGTCAGCAAAGT
GATGATCTGCGAGGAGTGCGGCAAGCGTTGCCAGCAGGTTCACGAGACGACCGTTCGACGCATCCGGGATCTACCGCTGTTCGAGTACCGGGTCGAGCTT
CACGTACCGCGTCGCCGGGTTTGGTGCGACCACTGCGGTGGCCCCCGACTGGAGCGGTTGGAGTGGTTGGGACGCTATCAGCGGGTCACGGCGCGTTTTG
CCAAAGCCTGCGAGGTCTTGTTGAAAGCGGCCAACGTGCAGGCGGTGGCGCGGTTCTACGGTCTTGATTGGCACACGGTCAAAGCGATCGACAAGATGGG
CTTGGCGGCCAGTCTTGTCGAACCGGATTGGTCGCAGGTGCGTTATCTGGCGATGGATGAGTTCGCGCTCCACAAAGGCCACCGCTACGCGACAGTCGTC
GTCGAGCCGGTCAATCGACAAGTGCTGTGGATCGGACAAGGCCGTTCGCGGGAAACCGCCCGTGCCTTCTTTGAGCAGCTTCCGAAGGGCGTTGCTGAGC
GTATCGAAGCCGTCGCGATCGATATGACGACGGCTTACGAGCTGGAAATCAAGGCGAATTGCCCGCAGGCCGAAATCGTCTATGACCTGTTCCACGTCGT
AGCCAAGTACGGCCGGGAAGTGATCGACCGGGTGCGGGTGGATCAGGCCAATCAGCTGCGACATGACCGGCCGGCTCGAAAAGTCCTGAAATCCAGCCGC
TGGCTGCTGTTGCGCAATCGGCAGAACCTGAAACCAGAGCAAACCGTCCATCTCGACGAACTACTGGAGGCCAATCGGCCGTTACTCAGCGTTTATCTGC
TGCGCGACGAACTGAAACGGCTCTGGTTCCATCGTGATCCGGTTTCGGCCCAATCGGCCTGGGAGCAATGGGTCGAGCAAGCCCAGCAGAGCGGCATCGC
CGCCTTGAAGGCGTTTGCCGAGCGGCTGCAGGCCTACTGGCACGGCATCGTGGCTCGCTGCCGACACCCGCTCAACACCAGCATCGTCGAGGGCATCAAC
AACACCATCAAGGTCATCAAGCGTCGGGCTTACGGGTACCGCGACGAGGAATATTTCTTCCTCAAGATCCGCGCCGCCTTCCCCGGTATCCCGCGATGAA
CC
AAGCGCTGGGCTGCTGGACGGGCTACCGGGTTGAGCGAGTGGAATGGCCGGCGGAAGGCAGTCGGACGCTGGCGCTGCATCTCAAGCCGGTCAGCAAAGT
GATGATCTGCGAGGAGTGCGGCAAGCGTTGCCAGCAGGTTCACGAGACGACCGTTCGACGCATCCGGGATCTACCGCTGTTCGAGTACCGGGTCGAGCTT
CACGTACCGCGTCGCCGGGTTTGGTGCGACCACTGCGGTGGCCCCCGACTGGAGCGGTTGGAGTGGTTGGGACGCTATCAGCGGGTCACGGCGCGTTTTG
CCAAAGCCTGCGAGGTCTTGTTGAAAGCGGCCAACGTGCAGGCGGTGGCGCGGTTCTACGGTCTTGATTGGCACACGGTCAAAGCGATCGACAAGATGGG
CTTGGCGGCCAGTCTTGTCGAACCGGATTGGTCGCAGGTGCGTTATCTGGCGATGGATGAGTTCGCGCTCCACAAAGGCCACCGCTACGCGACAGTCGTC
GTCGAGCCGGTCAATCGACAAGTGCTGTGGATCGGACAAGGCCGTTCGCGGGAAACCGCCCGTGCCTTCTTTGAGCAGCTTCCGAAGGGCGTTGCTGAGC
GTATCGAAGCCGTCGCGATCGATATGACGACGGCTTACGAGCTGGAAATCAAGGCGAATTGCCCGCAGGCCGAAATCGTCTATGACCTGTTCCACGTCGT
AGCCAAGTACGGCCGGGAAGTGATCGACCGGGTGCGGGTGGATCAGGCCAATCAGCTGCGACATGACCGGCCGGCTCGAAAAGTCCTGAAATCCAGCCGC
TGGCTGCTGTTGCGCAATCGGCAGAACCTGAAACCAGAGCAAACCGTCCATCTCGACGAACTACTGGAGGCCAATCGGCCGTTACTCAGCGTTTATCTGC
TGCGCGACGAACTGAAACGGCTCTGGTTCCATCGTGATCCGGTTTCGGCCCAATCGGCCTGGGAGCAATGGGTCGAGCAAGCCCAGCAGAGCGGCATCGC
CGCCTTGAAGGCGTTTGCCGAGCGGCTGCAGGCCTACTGGCACGGCATCGTGGCTCGCTGCCGACACCCGCTCAACACCAGCATCGTCGAGGGCATCAAC
AACACCATCAAGGTCATCAAGCGTCGGGCTTACGGGTACCGCGACGAGGAATATTTCTTCCTCAAGATCCGCGCCGCCTTCCCCGGTATCCCGCGATGAA
CC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 79 | 1299 | + | No |
Chemistry : Unknow
ORF sequence :
LLDRKALQALGCWTGYRVERVEWPAEGSRTLALHLKPVSKVMICEECGKRCQQVHETTVRRIRDLPLFEYRVELHVPRRRVWCDHCGGPRLERLEWLGRY
QRVTARFAKACEVLLKAANVQAVARFYGLDWHTVKAIDKMGLAASLVEPDWSQVRYLAMDEFALHKGHRYATVVVEPVNRQVLWIGQGRSRETARAFFEQ
LPKGVAERIEAVAIDMTTAYELEIKANCPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDRPARKVLKSSRWLLLRNRQNLKPEQTVHLDELLEANR
PLLSVYLLRDELKRLWFHRDPVSAQSAWEQWVEQAQQSGIAALKAFAERLQAYWHGIVARCRHPLNTSIVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR
QRVTARFAKACEVLLKAANVQAVARFYGLDWHTVKAIDKMGLAASLVEPDWSQVRYLAMDEFALHKGHRYATVVVEPVNRQVLWIGQGRSRETARAFFEQ
LPKGVAERIEAVAIDMTTAYELEIKANCPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRHDRPARKVLKSSRWLLLRNRQNLKPEQTVHLDELLEANR
PLLSVYLLRDELKRLWFHRDPVSAQSAWEQWVEQAQQSGIAALKAFAERLQAYWHGIVARCRHPLNTSIVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR
Blast result :
Comments
ISThsp14 is 90% aa similar to ISRso15.
References
1] ISfinder annotation (2009)