ISThsp13

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1583 bp

Ends


IR Length : 15/17

IRL : CCTGGATATTTCGCGAGCAAGAAGGTCGGCCGCTTGATCCGGTCGTGCGT
IRR : CCTGGATATTTCATGAGTCGCGATCGATGTCGGGTTTGGCATCGAGCGCG

Insertion site


Left flankDirect repeatRight flankDR Length
TAAGGGATGTTGTACTAGGCCGTGTTAACACAACCGG4

DNA sequence

CCTGGATATTTCGCGAGCAAGAAGGTCGGCCGCTTGATCCGGTCGTGCGTTTCAGAGGTATCGAGACTCGAAACGTGACGAACAAAGGAGGAAGCGGCCG
ATGCCAAAGTGTACCGAGGGCGTGGTGGATTTCGGGCGTGTCGGGCGCCGCGTGGTGCAGGCTGCGTTTGATGGCGGCGACATCGTCAGCGACGGCGGGG
TGATGCTGCTGCGGCAGATCGACGAGCGCATCGGGCTGACGCGCGCGGCAGCGGGAGTGTTCGCTGATGGCCGTCGCGCCGCCAGTGTTCGCCACAGCAT
GCGCAGCCTGCTGGCGCAGCGCATCTACGGCCTGTGCTGCGGCTGGGAGGACGTGACGGACCACAACACGTTGCGGCACGACCTGGCGCTGCAGACGGCG
GTGGGCAGGGCCGAGGAGCTGGCGTCGGCCCCCACGTTCAGCCGCCTGGAGCGCTCGGCCACGCCCGCGCATGCCGCGGCGCTGCACGGGGTGTTGCTGG
AGACGTTCATCGCCGGGCGTGGCGAGGCACCGCGCGAGCTGGTGCTCGACATCGACGCCACTCACGTGCCGTTGTACGGACAGCAGGAAGGGGCGCACTT
CCACTTCCACTACGACAGCTACTGCTACTTGCCTCTGTACGTGTTCTGCGGCCAGGACATGCTGGCGTGCGTGCTGCGCCCGAGCTGGCGCGACCCGGCC
AGCGTGCTCAGTGCGCTCATCAAGCTGCTGGCGCGCCGGCTGCGCCAGGCCTGGCCGGGTGTGCGTCTGATCGTGCGCGCCGACTCGGGGTTCTGCCGCC
CGCGCGCGCTCAAGCGCTTCGACGCCTGGGGCATCGATTACATCATCGGGCTGGCGAAGAATCCCACGCTGCAATGGCAGGTCGCCATCGCTGAGCGGGC
CCTGGCCGAGCAGTATCAGGACTGCGGCACCAAGCAGAGGCTCATCGGCGAGTTCACGTACGCGGCACGAAGCTGGGAGCGCGAACGGCGCGTGATCGCC
CGGCTCGAACATGGCCCCCAGGGACCCAATCCACGCTTCGTGGTCACCAGCCTGGCTGGTGATTGCACCGAGCTCTACGAGCGTCTGTACTGCGCGCGCG
GCGAGGCCGAGAACCGCATCAAGGAAGCCCAGCTCGATCTGTTCGGCCGTCGCGCCAGCGCCCATCGCTTCGCGGCCAACCAGCTGCGCCTGCTGCTGGC
GGCCTTCGCCTATACGCTCATCATCCAGTTGCGTCGGCGCGCGCTGCAGGGCACCGAACTCGCGCGTGCCTGTGCGGCCACCATCCGCATCAAGCTGCTC
AAGATCGGCGCGGCCGTCGTGCGCAACACCCGCCGCGTGCGCCTGCTACTGGCCTCCAGCCATCCCCTCAAGCACGTGTTCCTCAGCGCCGCCCACGCCC
TGGCCCCTTGAGCGACAAAGAGTGCTGTCCCCGGCACGTTGACGAACAACGGGGGTAAGGGGGCATTGCGCCCTGCGTTTGCCAATACCCACGCGTCGAG
GCTTCAGACCCTCCTCCGCGATGCCAGTCGCGTCGCGCTCGATGCCAAACCCGACATCGATCGCGACTCATGAAATATCCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1311 bp436 aa1011411+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKCTEGVVDFGRVGRRVVQAAFDGGDIVSDGGVMLLRQIDERIGLTRAAAGVFADGRRAASVRHSMRSLLAQRIYGLCCGWEDVTDHNTLRHDLALQTA
VGRAEELASAPTFSRLERSATPAHAAALHGVLLETFIAGRGEAPRELVLDIDATHVPLYGQQEGAHFHFHYDSYCYLPLYVFCGQDMLACVLRPSWRDPA
SVLSALIKLLARRLRQAWPGVRLIVRADSGFCRPRALKRFDAWGIDYIIGLAKNPTLQWQVAIAERALAEQYQDCGTKQRLIGEFTYAARSWERERRVIA
RLEHGPQGPNPRFVVTSLAGDCTELYERLYCARGEAENRIKEAQLDLFGRRASAHRFAANQLRLLLAAFAYTLIIQLRRRALQGTELARACAATIRIKLL
KIGAAVVRNTRRVRLLLASSHPLKHVFLSAAHALAP

 

Blast result :
Comments
ISThsp13 is 54% aa similar to IS1380.
References
1] ISfinder annotation (2009)