ISThsp13
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1583 bp
Ends
IR Length : 15/17
IRL : CCTGGATATTTCGCGAGCAAGAAGGTCGGCCGCTTGATCCGGTCGTGCGT
IRR : CCTGGATATTTCATGAGTCGCGATCGATGTCGGGTTTGGCATCGAGCGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAGGGATGTTGTA | CTAG | GCCGTGTTAACACAACCGG | 4 |
DNA sequence
CCTGGATATTTCGCGAGCAAGAAGGTCGGCCGCTTGATCCGGTCGTGCGTTTCAGAGGTATCGAGACTCGAAACGTGACGAACAAAGGAGGAAGCGGCCG
ATGCCAAAGTGTACCGAGGGCGTGGTGGATTTCGGGCGTGTCGGGCGCCGCGTGGTGCAGGCTGCGTTTGATGGCGGCGACATCGTCAGCGACGGCGGGG
TGATGCTGCTGCGGCAGATCGACGAGCGCATCGGGCTGACGCGCGCGGCAGCGGGAGTGTTCGCTGATGGCCGTCGCGCCGCCAGTGTTCGCCACAGCAT
GCGCAGCCTGCTGGCGCAGCGCATCTACGGCCTGTGCTGCGGCTGGGAGGACGTGACGGACCACAACACGTTGCGGCACGACCTGGCGCTGCAGACGGCG
GTGGGCAGGGCCGAGGAGCTGGCGTCGGCCCCCACGTTCAGCCGCCTGGAGCGCTCGGCCACGCCCGCGCATGCCGCGGCGCTGCACGGGGTGTTGCTGG
AGACGTTCATCGCCGGGCGTGGCGAGGCACCGCGCGAGCTGGTGCTCGACATCGACGCCACTCACGTGCCGTTGTACGGACAGCAGGAAGGGGCGCACTT
CCACTTCCACTACGACAGCTACTGCTACTTGCCTCTGTACGTGTTCTGCGGCCAGGACATGCTGGCGTGCGTGCTGCGCCCGAGCTGGCGCGACCCGGCC
AGCGTGCTCAGTGCGCTCATCAAGCTGCTGGCGCGCCGGCTGCGCCAGGCCTGGCCGGGTGTGCGTCTGATCGTGCGCGCCGACTCGGGGTTCTGCCGCC
CGCGCGCGCTCAAGCGCTTCGACGCCTGGGGCATCGATTACATCATCGGGCTGGCGAAGAATCCCACGCTGCAATGGCAGGTCGCCATCGCTGAGCGGGC
CCTGGCCGAGCAGTATCAGGACTGCGGCACCAAGCAGAGGCTCATCGGCGAGTTCACGTACGCGGCACGAAGCTGGGAGCGCGAACGGCGCGTGATCGCC
CGGCTCGAACATGGCCCCCAGGGACCCAATCCACGCTTCGTGGTCACCAGCCTGGCTGGTGATTGCACCGAGCTCTACGAGCGTCTGTACTGCGCGCGCG
GCGAGGCCGAGAACCGCATCAAGGAAGCCCAGCTCGATCTGTTCGGCCGTCGCGCCAGCGCCCATCGCTTCGCGGCCAACCAGCTGCGCCTGCTGCTGGC
GGCCTTCGCCTATACGCTCATCATCCAGTTGCGTCGGCGCGCGCTGCAGGGCACCGAACTCGCGCGTGCCTGTGCGGCCACCATCCGCATCAAGCTGCTC
AAGATCGGCGCGGCCGTCGTGCGCAACACCCGCCGCGTGCGCCTGCTACTGGCCTCCAGCCATCCCCTCAAGCACGTGTTCCTCAGCGCCGCCCACGCCC
TGGCCCCTTGAGCGACAAAGAGTGCTGTCCCCGGCACGTTGACGAACAACGGGGGTAAGGGGGCATTGCGCCCTGCGTTTGCCAATACCCACGCGTCGAG
GCTTCAGACCCTCCTCCGCGATGCCAGTCGCGTCGCGCTCGATGCCAAACCCGACATCGATCGCGACTCATGAAATATCCAGG
ATGCCAAAGTGTACCGAGGGCGTGGTGGATTTCGGGCGTGTCGGGCGCCGCGTGGTGCAGGCTGCGTTTGATGGCGGCGACATCGTCAGCGACGGCGGGG
TGATGCTGCTGCGGCAGATCGACGAGCGCATCGGGCTGACGCGCGCGGCAGCGGGAGTGTTCGCTGATGGCCGTCGCGCCGCCAGTGTTCGCCACAGCAT
GCGCAGCCTGCTGGCGCAGCGCATCTACGGCCTGTGCTGCGGCTGGGAGGACGTGACGGACCACAACACGTTGCGGCACGACCTGGCGCTGCAGACGGCG
GTGGGCAGGGCCGAGGAGCTGGCGTCGGCCCCCACGTTCAGCCGCCTGGAGCGCTCGGCCACGCCCGCGCATGCCGCGGCGCTGCACGGGGTGTTGCTGG
AGACGTTCATCGCCGGGCGTGGCGAGGCACCGCGCGAGCTGGTGCTCGACATCGACGCCACTCACGTGCCGTTGTACGGACAGCAGGAAGGGGCGCACTT
CCACTTCCACTACGACAGCTACTGCTACTTGCCTCTGTACGTGTTCTGCGGCCAGGACATGCTGGCGTGCGTGCTGCGCCCGAGCTGGCGCGACCCGGCC
AGCGTGCTCAGTGCGCTCATCAAGCTGCTGGCGCGCCGGCTGCGCCAGGCCTGGCCGGGTGTGCGTCTGATCGTGCGCGCCGACTCGGGGTTCTGCCGCC
CGCGCGCGCTCAAGCGCTTCGACGCCTGGGGCATCGATTACATCATCGGGCTGGCGAAGAATCCCACGCTGCAATGGCAGGTCGCCATCGCTGAGCGGGC
CCTGGCCGAGCAGTATCAGGACTGCGGCACCAAGCAGAGGCTCATCGGCGAGTTCACGTACGCGGCACGAAGCTGGGAGCGCGAACGGCGCGTGATCGCC
CGGCTCGAACATGGCCCCCAGGGACCCAATCCACGCTTCGTGGTCACCAGCCTGGCTGGTGATTGCACCGAGCTCTACGAGCGTCTGTACTGCGCGCGCG
GCGAGGCCGAGAACCGCATCAAGGAAGCCCAGCTCGATCTGTTCGGCCGTCGCGCCAGCGCCCATCGCTTCGCGGCCAACCAGCTGCGCCTGCTGCTGGC
GGCCTTCGCCTATACGCTCATCATCCAGTTGCGTCGGCGCGCGCTGCAGGGCACCGAACTCGCGCGTGCCTGTGCGGCCACCATCCGCATCAAGCTGCTC
AAGATCGGCGCGGCCGTCGTGCGCAACACCCGCCGCGTGCGCCTGCTACTGGCCTCCAGCCATCCCCTCAAGCACGTGTTCCTCAGCGCCGCCCACGCCC
TGGCCCCTTGAGCGACAAAGAGTGCTGTCCCCGGCACGTTGACGAACAACGGGGGTAAGGGGGCATTGCGCCCTGCGTTTGCCAATACCCACGCGTCGAG
GCTTCAGACCCTCCTCCGCGATGCCAGTCGCGTCGCGCTCGATGCCAAACCCGACATCGATCGCGACTCATGAAATATCCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1311 bp | 436 aa | 101 | 1411 | + | No |
Chemistry : DDE
ORF sequence :
MPKCTEGVVDFGRVGRRVVQAAFDGGDIVSDGGVMLLRQIDERIGLTRAAAGVFADGRRAASVRHSMRSLLAQRIYGLCCGWEDVTDHNTLRHDLALQTA
VGRAEELASAPTFSRLERSATPAHAAALHGVLLETFIAGRGEAPRELVLDIDATHVPLYGQQEGAHFHFHYDSYCYLPLYVFCGQDMLACVLRPSWRDPA
SVLSALIKLLARRLRQAWPGVRLIVRADSGFCRPRALKRFDAWGIDYIIGLAKNPTLQWQVAIAERALAEQYQDCGTKQRLIGEFTYAARSWERERRVIA
RLEHGPQGPNPRFVVTSLAGDCTELYERLYCARGEAENRIKEAQLDLFGRRASAHRFAANQLRLLLAAFAYTLIIQLRRRALQGTELARACAATIRIKLL
KIGAAVVRNTRRVRLLLASSHPLKHVFLSAAHALAP
VGRAEELASAPTFSRLERSATPAHAAALHGVLLETFIAGRGEAPRELVLDIDATHVPLYGQQEGAHFHFHYDSYCYLPLYVFCGQDMLACVLRPSWRDPA
SVLSALIKLLARRLRQAWPGVRLIVRADSGFCRPRALKRFDAWGIDYIIGLAKNPTLQWQVAIAERALAEQYQDCGTKQRLIGEFTYAARSWERERRVIA
RLEHGPQGPNPRFVVTSLAGDCTELYERLYCARGEAENRIKEAQLDLFGRRASAHRFAANQLRLLLAAFAYTLIIQLRRRALQGTELARACAATIRIKLL
KIGAAVVRNTRRVRLLLASSHPLKHVFLSAAHALAP
Blast result :
Comments
ISThsp13 is 54% aa similar to IS1380.
References
1] ISfinder annotation (2009)