ISThsp11
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 1814 bp
Ends
IR Length : 15/19
IRL : TGGTGATGACCCACAATGTGGAAGTCTCCATCGTGCTTGGCGTCGTCACG
IRR : TGGTGATGACGGCGATGTATCAACTGCACCGCATCGGCGGCCGCTACGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGGGCGCCCACAAGGCCA | GTCGCGCGCCGCTGGCGCCG | 0 |
DNA sequence
TGGTGATGACCCACAATGTGGAAGTCTCCATCGTGCTTGGCGTCGTCACGGCAGTCGGCGGCGGCGTCATGCGTGACGTGCTGCTCAATCGCGTTCCAGT
CATCCTGCAGCGGGAAATCTACGCACTGGCGGCACTCATTGGCGCTTGCGTGCAGGTGCTCGGGCAGGTGCGCGGATGGAACGTGATGCTCACCCCCTGG
TTGGGCGCGGGCAGTTGCGCGCTGATCCGCTTTCTGTCGCTGCGGCGCCGATGGAGTCTGCCTGTTTACGGCAAATCGCCATGAACTTGCCCCCGAAAAA
TGTACTCCATAGCTGAGGCTGAAAATGTATCCATGGAGCACGAAAGATGAGCAAGACAGATCAAGGGCAGCACCGAGCGCGGTACACACTGGAGTTCAAG
CTGGAGGCCGTTCGGCTGGTCAAGGCCGGGCAGGAAGCGTCGGTGACGGCGCGCGTGCTGGGTCTACCGAAGCAGACGCTGAGCAACTGGGTTCGGCTGG
CCGAGAAGGGGGCGCTGCAGGGCGTCGGCGAACGACCGGTGAGCGCCGAGCAGATGGAGCTGGCACGATTGCGTGCCGAGCTGGCGCGCGTGAAGATGGA
GCGCGACATCCTAAAAAAAAGCGACGGCGTACTTTGCAAAGGAATCGCTGTGAAGTACGCCTGGATCGGCAAGAACAAGGCGGCGTGGCCCGTCACCGTG
ATGTGCGATGTGTTGGGCGTGAGCCCCAGCGGCTACTTCGCTCATCAGCGTCGGCGGCGCAGCGCGCAGCCCTGTCCGCCTCGCGGTACGCGGCTCAGCA
ACGAGGCTCTGCTGGCTCACATCCGAGCCATCCACGCCCAAGTCAAAGGCGAATACGGCTGGCCAAGAGTGTGGAAGAAATTGTTGGTGCGTGGTCTTCG
CGTCGGCAAACACCGCATGCAGCGATTGATGCACACGCACGGCATCAAGGCGCGTAGCAAGAGGAAATTCGTGGTGACGACGGATAGCAAACACGATCTG
CCGATCGCTGAGAACTTGCTGGCGCGCGACTTCACCCCGGTGGCGCCCGACCGGGTCTGGAGCAGCGACATCACCTACATCGCCACCGGCGAAGGCTGGC
TGTATCTGGTTGCGGTGCTTGACCTGTTCAGTCGCCAAGTGGTGGGCTGGAGCATGCAGCCGCACATGCAGGCCAGTCTGGTGACGGATGCGCTGCGCAT
GGCGTGGTTCAGGCGTCAGCCCGCGCCGGGCCTGATCTTCCACTCGGACCGCGGCAGCCAATACTGCAGCCACGCGTTCCAGGATGCGCTGGCCAGCTAC
GGCATGCTGTCGTTGATGAGTCGCAAGGGCAACTGCTGGGATCATGCGCCGACCGAGAGCCTGTGGGGCAGCCTGAAGGTGGGGCGCCTCTATGGCAGGA
CATTCGCCACCCGGCGCCAGGCGATGGATGAGGTGATCGACTGGTTGACGTTCTATAACCATCGCCGACTTCACTCCACGCTGGGCTACATCAGCCCGAT
GAGGTTCGAAGCAAACTGGCACGCGGGCCAGTCAAAACAAGCCGCGTAACAAGGTGGCTATGGACTACGTCCAACAGGGGCAAGGTCAGGTCGGCTTGAC
CATCCGCCAGCTTGGCTATCCGACGAAAAACTCGATCTGTGAGCGCCGAGGCAATTTTTGAGCCACCGGCTCAATTTTCGGTTGGCGCAAACATGCACAC
GTCATCAGACCCGTTCGATCACCACCGCGATGCCCTGCCCGACGCCCACGCACATGGTCGCGAGGGCGTAGCGGCCGCCGATGCGGTGCAGTTGATACAT
CGCCGTCATCACCA
CATCCTGCAGCGGGAAATCTACGCACTGGCGGCACTCATTGGCGCTTGCGTGCAGGTGCTCGGGCAGGTGCGCGGATGGAACGTGATGCTCACCCCCTGG
TTGGGCGCGGGCAGTTGCGCGCTGATCCGCTTTCTGTCGCTGCGGCGCCGATGGAGTCTGCCTGTTTACGGCAAATCGCCATGAACTTGCCCCCGAAAAA
TGTACTCCATAGCTGAGGCTGAAAATGTATCCATGGAGCACGAAAGATGAGCAAGACAGATCAAGGGCAGCACCGAGCGCGGTACACACTGGAGTTCAAG
CTGGAGGCCGTTCGGCTGGTCAAGGCCGGGCAGGAAGCGTCGGTGACGGCGCGCGTGCTGGGTCTACCGAAGCAGACGCTGAGCAACTGGGTTCGGCTGG
CCGAGAAGGGGGCGCTGCAGGGCGTCGGCGAACGACCGGTGAGCGCCGAGCAGATGGAGCTGGCACGATTGCGTGCCGAGCTGGCGCGCGTGAAGATGGA
GCGCGACATCCTAAAAAAAAGCGACGGCGTACTTTGCAAAGGAATCGCTGTGAAGTACGCCTGGATCGGCAAGAACAAGGCGGCGTGGCCCGTCACCGTG
ATGTGCGATGTGTTGGGCGTGAGCCCCAGCGGCTACTTCGCTCATCAGCGTCGGCGGCGCAGCGCGCAGCCCTGTCCGCCTCGCGGTACGCGGCTCAGCA
ACGAGGCTCTGCTGGCTCACATCCGAGCCATCCACGCCCAAGTCAAAGGCGAATACGGCTGGCCAAGAGTGTGGAAGAAATTGTTGGTGCGTGGTCTTCG
CGTCGGCAAACACCGCATGCAGCGATTGATGCACACGCACGGCATCAAGGCGCGTAGCAAGAGGAAATTCGTGGTGACGACGGATAGCAAACACGATCTG
CCGATCGCTGAGAACTTGCTGGCGCGCGACTTCACCCCGGTGGCGCCCGACCGGGTCTGGAGCAGCGACATCACCTACATCGCCACCGGCGAAGGCTGGC
TGTATCTGGTTGCGGTGCTTGACCTGTTCAGTCGCCAAGTGGTGGGCTGGAGCATGCAGCCGCACATGCAGGCCAGTCTGGTGACGGATGCGCTGCGCAT
GGCGTGGTTCAGGCGTCAGCCCGCGCCGGGCCTGATCTTCCACTCGGACCGCGGCAGCCAATACTGCAGCCACGCGTTCCAGGATGCGCTGGCCAGCTAC
GGCATGCTGTCGTTGATGAGTCGCAAGGGCAACTGCTGGGATCATGCGCCGACCGAGAGCCTGTGGGGCAGCCTGAAGGTGGGGCGCCTCTATGGCAGGA
CATTCGCCACCCGGCGCCAGGCGATGGATGAGGTGATCGACTGGTTGACGTTCTATAACCATCGCCGACTTCACTCCACGCTGGGCTACATCAGCCCGAT
GAGGTTCGAAGCAAACTGGCACGCGGGCCAGTCAAAACAAGCCGCGTAACAAGGTGGCTATGGACTACGTCCAACAGGGGCAAGGTCAGGTCGGCTTGAC
CATCCGCCAGCTTGGCTATCCGACGAAAAACTCGATCTGTGAGCGCCGAGGCAATTTTTGAGCCACCGGCTCAATTTTCGGTTGGCGCAAACATGCACAC
GTCATCAGACCCGTTCGATCACCACCGCGATGCCCTGCCCGACGCCCACGCACATGGTCGCGAGGGCGTAGCGGCCGCCGATGCGGTGCAGTTGATACAT
CGCCGTCATCACCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 347 | 1549 | + | No |
Chemistry : DDE
ORF sequence :
MSKTDQGQHRARYTLEFKLEAVRLVKAGQEASVTARVLGLPKQTLSNWVRLAEKGALQGVGERPVSAEQMELARLRAELARVKMERDILKKSDGVLCKGI
AVKYAWIGKNKAAWPVTVMCDVLGVSPSGYFAHQRRRRSAQPCPPRGTRLSNEALLAHIRAIHAQVKGEYGWPRVWKKLLVRGLRVGKHRMQRLMHTHGI
KARSKRKFVVTTDSKHDLPIAENLLARDFTPVAPDRVWSSDITYIATGEGWLYLVAVLDLFSRQVVGWSMQPHMQASLVTDALRMAWFRRQPAPGLIFHS
DRGSQYCSHAFQDALASYGMLSLMSRKGNCWDHAPTESLWGSLKVGRLYGRTFATRRQAMDEVIDWLTFYNHRRLHSTLGYISPMRFEANWHAGQSKQAA
AVKYAWIGKNKAAWPVTVMCDVLGVSPSGYFAHQRRRRSAQPCPPRGTRLSNEALLAHIRAIHAQVKGEYGWPRVWKKLLVRGLRVGKHRMQRLMHTHGI
KARSKRKFVVTTDSKHDLPIAENLLARDFTPVAPDRVWSSDITYIATGEGWLYLVAVLDLFSRQVVGWSMQPHMQASLVTDALRMAWFRRQPAPGLIFHS
DRGSQYCSHAFQDALASYGMLSLMSRKGNCWDHAPTESLWGSLKVGRLYGRTFATRRQAMDEVIDWLTFYNHRRLHSTLGYISPMRFEANWHAGQSKQAA
Blast result :
Comments
ISThsp11 is 81% aa similar to ISMpe1. There is no programmed frameshift.
References
1] ISfinder annotation (2009)