ISThsp11

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1814 bp

Ends


IR Length : 15/19

IRL : TGGTGATGACCCACAATGTGGAAGTCTCCATCGTGCTTGGCGTCGTCACG
IRR : TGGTGATGACGGCGATGTATCAACTGCACCGCATCGGCGGCCGCTACGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGGGCGCCCACAAGGCCAGTCGCGCGCCGCTGGCGCCG0

DNA sequence

TGGTGATGACCCACAATGTGGAAGTCTCCATCGTGCTTGGCGTCGTCACGGCAGTCGGCGGCGGCGTCATGCGTGACGTGCTGCTCAATCGCGTTCCAGT
CATCCTGCAGCGGGAAATCTACGCACTGGCGGCACTCATTGGCGCTTGCGTGCAGGTGCTCGGGCAGGTGCGCGGATGGAACGTGATGCTCACCCCCTGG
TTGGGCGCGGGCAGTTGCGCGCTGATCCGCTTTCTGTCGCTGCGGCGCCGATGGAGTCTGCCTGTTTACGGCAAATCGCCATGAACTTGCCCCCGAAAAA
TGTACTCCATAGCTGAGGCTGAAAATGTATCCATGGAGCACGAAAGATGAGCAAGACAGATCAAGGGCAGCACCGAGCGCGGTACACACTGGAGTTCAAG
CTGGAGGCCGTTCGGCTGGTCAAGGCCGGGCAGGAAGCGTCGGTGACGGCGCGCGTGCTGGGTCTACCGAAGCAGACGCTGAGCAACTGGGTTCGGCTGG
CCGAGAAGGGGGCGCTGCAGGGCGTCGGCGAACGACCGGTGAGCGCCGAGCAGATGGAGCTGGCACGATTGCGTGCCGAGCTGGCGCGCGTGAAGATGGA
GCGCGACATCCTAAAAAAAAGCGACGGCGTACTTTGCAAAGGAATCGCTGTGAAGTACGCCTGGATCGGCAAGAACAAGGCGGCGTGGCCCGTCACCGTG
ATGTGCGATGTGTTGGGCGTGAGCCCCAGCGGCTACTTCGCTCATCAGCGTCGGCGGCGCAGCGCGCAGCCCTGTCCGCCTCGCGGTACGCGGCTCAGCA
ACGAGGCTCTGCTGGCTCACATCCGAGCCATCCACGCCCAAGTCAAAGGCGAATACGGCTGGCCAAGAGTGTGGAAGAAATTGTTGGTGCGTGGTCTTCG
CGTCGGCAAACACCGCATGCAGCGATTGATGCACACGCACGGCATCAAGGCGCGTAGCAAGAGGAAATTCGTGGTGACGACGGATAGCAAACACGATCTG
CCGATCGCTGAGAACTTGCTGGCGCGCGACTTCACCCCGGTGGCGCCCGACCGGGTCTGGAGCAGCGACATCACCTACATCGCCACCGGCGAAGGCTGGC
TGTATCTGGTTGCGGTGCTTGACCTGTTCAGTCGCCAAGTGGTGGGCTGGAGCATGCAGCCGCACATGCAGGCCAGTCTGGTGACGGATGCGCTGCGCAT
GGCGTGGTTCAGGCGTCAGCCCGCGCCGGGCCTGATCTTCCACTCGGACCGCGGCAGCCAATACTGCAGCCACGCGTTCCAGGATGCGCTGGCCAGCTAC
GGCATGCTGTCGTTGATGAGTCGCAAGGGCAACTGCTGGGATCATGCGCCGACCGAGAGCCTGTGGGGCAGCCTGAAGGTGGGGCGCCTCTATGGCAGGA
CATTCGCCACCCGGCGCCAGGCGATGGATGAGGTGATCGACTGGTTGACGTTCTATAACCATCGCCGACTTCACTCCACGCTGGGCTACATCAGCCCGAT
GAGGTTCGAAGCAAACTGGCACGCGGGCCAGTCAAAACAAGCCGCGTAACAAGGTGGCTATGGACTACGTCCAACAGGGGCAAGGTCAGGTCGGCTTGAC
CATCCGCCAGCTTGGCTATCCGACGAAAAACTCGATCTGTGAGCGCCGAGGCAATTTTTGAGCCACCGGCTCAATTTTCGGTTGGCGCAAACATGCACAC
GTCATCAGACCCGTTCGATCACCACCGCGATGCCCTGCCCGACGCCCACGCACATGGTCGCGAGGGCGTAGCGGCCGCCGATGCGGTGCAGTTGATACAT
CGCCGTCATCACCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa3471549+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKTDQGQHRARYTLEFKLEAVRLVKAGQEASVTARVLGLPKQTLSNWVRLAEKGALQGVGERPVSAEQMELARLRAELARVKMERDILKKSDGVLCKGI
AVKYAWIGKNKAAWPVTVMCDVLGVSPSGYFAHQRRRRSAQPCPPRGTRLSNEALLAHIRAIHAQVKGEYGWPRVWKKLLVRGLRVGKHRMQRLMHTHGI
KARSKRKFVVTTDSKHDLPIAENLLARDFTPVAPDRVWSSDITYIATGEGWLYLVAVLDLFSRQVVGWSMQPHMQASLVTDALRMAWFRRQPAPGLIFHS
DRGSQYCSHAFQDALASYGMLSLMSRKGNCWDHAPTESLWGSLKVGRLYGRTFATRRQAMDEVIDWLTFYNHRRLHSTLGYISPMRFEANWHAGQSKQAA

 

Blast result :
Comments
ISThsp11 is 81% aa similar to ISMpe1. There is no programmed frameshift.
References
1] ISfinder annotation (2009)