ISThsp10

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 2501 bp

Ends


IR Length : 26/30

IRL : TGTTGATTTCCATCCAGAACTGACCCAGTAACCCCCAGGATTTCCATCTA
IRR : TGTTGATTTCCATGCAAACCTGACCCACTATTTTCATCTCGATCTGACCC

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCTCCGTCAGGCCAGTGCCTACGTCGCAGCCTGTGGG0
TCAAATCAGATGCTCCGAACCAATCCCCAAAAATCCATC0
CGCCTGCGGTCGATCTGCGTGCAGGCCGATGAAAGCCGG0

DNA sequence

TGTTGATTTCCATCCAGAACTGACCCAGTAACCCCCAGGATTTCCATCTAAATCTGACCCACGTACTAACCCTAACCTGCTGCTTTGTTTAGCAGCAGGA
GACCAGGAGTGATAGACGTGGCAACACTGAGTGTTATCAGACGCTGTGCCCTGCGCGAGCAGATGTCCATCCGCGAGATCTCCCGCCGCACCGGCCTTTC
TCGCAACACCATCCGCAAGTACCTGCGCGCAGGCGAGTCCGAACCGCACTACGCCAAGCGGGTTAGCCCCAGCAAGCTCGATCCTTTCGCTGGCAAACTC
GCTGGCTGGCTCAAGGCCGAGGCTGGCCGATCACGCAAGCAGCGGCGCACCGTCAAGCAGATGCACGCGGATCTACAGACCCTGGGCTACCCGGGCTCCT
ACAACCGCGTCGCGGCCTTCGTCCGGCTTTGGCACGAGGAGCGCCTGGTGGCCCAGCAGACTACGGGCCGTGGCACCTTCGTGCCCCTGACCTTCGGCCC
AGGTGAGGCCTTTCAGTTTGACTGGAGTGAGGACTGGGCGGTTATTGCCGGAGTGCGCACCAAGCTGCAGGTGGCGCACTTCAAGCTCAGCCACAGCCGG
GCGTTCTACCTGCGCGCCTATCTGCTGCAGACCCACGAGATGCTGTTTGACGCGCACAACCACGCCTTTGCGGTGTTCGGTGGCGTGCCGCGCCGGGGTA
TCTATGACAACATGCGCACCGCTGTGGATCGGGTTCGCAGGGGTAAGGAACGTGATGTCAACGCACGCTTTGCGGCCATGGCCAGCCACTTCTTGTTCGA
GGCCGAGTTCTGCAACCCCGCCTCCGGCTGGGAGAAGGGCCAGGTGGAGAAGAATGTGTGTGATGCGCGCCACCGGCTGTGGCAAGTCGTGCCGGCCTTC
CCGGCCCTCGACGATCTCAACGTCTGGCTGGAACAACGCTGCCAGGCGCTATGGCGCGAGATTGCGCATGGCAAGCTGCCGGGTACCGTAGCTCACGTCT
GGGCCCAGGAGCGGGCCGCCTTGATGCCGGTGCCACGGCCCTTCGATGGCTTTGTGGAACACACCAAGCGGGTCTCGCCCACCTGCCTGATCCACTTCGA
GCGCAACCGCTACAGCGTGCCAGCGCCGTAGGCCAATCGGCCTGTGAGCCTGCGGGTCTACGCGGATCGCCTGGTTGTCGCGGCCGAGGGCCAGATCGTC
TGTGAGCATCAGCGCCTGATCGAGCGCAACCACCATGGCGCTGGCCAGACCGTCTACGACTGGCGCCACTACCTGGCGGTGCTGCAGCGCAAGCCCGGGG
CCCTGCGCAACGGTGCTCCGTTCCTGGAGCTGCCTGGAGCCTTCAAGCGACTGCAGGCTGCACTCGTGAAACAGCCGGGTGGAGATAGGGAGATGGTGGA
GGTTATGGCGCTGGTGCTGCACCACGACGAGCAGGCTGTGCTGGCGGCGGTGGAACTGGCCTTGGAGGCCGGAGCCGCCAGCAAGACCCACATCCTGAAT
GTCTTGCACCGCTTGCTCGATGGCAAGCCGGCCCCGGCGCCTGTCACCTCTCCCCAGGCACTCAAGCTGTCTGTGGAACCCCAGGCCAACGTGCTTCGCT
ATGACCAACTGAGGGAGGTCCGCTATGCGTCATGACCCTGCCATCGCTTCCATCGTGATCATGCTGCGCGAGCTCAAGATGCACGGCATGGCCCAGGCGG
TCACTGAACTGGCCGAGCAAGGTGCTCCCGCTTTCGAGGCAGCCCAGCCGATCCTGTCGCAGTTACTCAAAGCGGAGACCGCCGAGCGAGAAGTGCGCTC
GGTGGCCTACCAGTTGAAGGGGGCAAGATTCCCGGCGTATCGGGACCTGGCAGGCTTTGACTTCTCGCACAGCGAAGTGAACGAAGCCCTGGTGCGCCAG
TTGCATCGGTGCGCGTTCCTGGAGGATGCCAACAACGTGGTCCTCGTGGGCGGGCCCGGCACTGGCAAGACCCACATTGCCACAGCCCTCGGTGTGCAGG
CCATTGAGCACCATCACCGCAGGGTTCGGTTCTTGTCCACGGTGGAGCTGGTCAATGCATTGGAGCAGGAGAAGGCCAACGGCAAGTCCGGACAGTTGGC
CCACCGGCTGGCCTATGCCGATCTGGTGATTCTCGATGAGCTGGGTTACCTGCCGTTCAGCGCTTCAGGCGGTGCCTTGCTGTTTCACCTGCTGTCCAAG
CTGTACGAGCGCACCAGTGTCGTGATCACCACCAACCTGAGCTTCAGCGAATGGGCCGGCGTGTTCGGGGATGCCAAAATGACCACGGCACTGCTAGACC
GGCTCACGCATCACTGCCATATTCTGGAAACCGGTAACGACAGCTTCCGGTTCAAAAACAGCTCTGCACAGCAACCCCCACAGACGACCAAGAAGGAGAA
GATACCCAAGAACTTATCCACAACGTGAGCTTCAAGTTCACAAACAAGGGTGGGTCAGATCGAGATGAAAATAGTGGGTCAGGTTTGCATGGAAATCAAC
A
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1527 bp508 aa1091635+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VIDVATLSVIRRCALREQMSIREISRRTGLSRNTIRKYLRAGESEPHYAKRVSPSKLDPFAGKLAGWLKAEAGRSRKQRRTVKQMHADLQTLGYPGSYNR
VAAFVRLWHEERLVAQQTTGRGTFVPLTFGPGEAFQFDWSEDWAVIAGVRTKLQVAHFKLSHSRAFYLRAYLLQTHEMLFDAHNHAFAVFGGVPRRGIYD
NMRTAVDRVRRGKERDVNARFAAMASHFLFEAEFCNPASGWEKGQVEKNVCDARHRLWQVVPAFPALDDLNVWLEQRCQALWREIAHGKLPGTVAHVWAQ
ERAALMPVPRPFDGFVEHTKRVSPTCLIHFERNRYSVPAP*ANRPVSLRVYADRLVVAAEGQIVCEHQRLIERNHHGAGQTVYDWRHYLAVLQRKPGALR
NGAPFLELPGAFKRLQAALVKQPGGDREMVEVMALVLHHDEQAVLAAVELALEAGAASKTHILNVLHRLLDGKPAPAPVTSPQALKLSVEPQANVLRYDQ
LREVRYAS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
804 bp268 aa16252428+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRHDPAIASIVIMLRELKMHGMAQAVTELAEQGAPAFEAAQPILSQLLKAETAEREVRSVAYQLKGARFPAYRDLAGFDFSHSEVNEALVRQLHRCAFLE
DANNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFLSTVELVNALEQEKANGKSGQLAHRLAYADLVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWAGVFGDAKMTTALLDRLTHHCHILETGNDSFRFKNSSAQQPPQTTKKEKIPKNLSTT

 

Blast result :
Comments
ISThsp10 is 89%(ORFA) and 91%(ORFB) aa similar to IS1600.
There is a STOP codon in phase at position 341 of the transposase in each 3 copies.
References
1] ISfinder annotation