ISDha13

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007907 ND Desulfitobacterium hafniense
Desulfitobacterium hafniense Y51
DNA section
IS Length : 745 bp

Ends


Left end : GGGCTTTAGCCTGTTGAGCGAGAGCGAAACAAAAAACCACCTGCTACGCGGGTGGCGACAAAAAGTTATACAAAGAAAACACCTTTCCGGTTAAAGTAGA II struct. : Yes
Right end : AGTAGCTTGAACGAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCCGGTAACAGAGGCTTATAGCCTCAGAGCAAACCACCCGTTGGACGGGTGGTGATGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTTATCGTTATTTATTGTTTCATCTAGGTTCTtgat

DNA sequence

GGGCTTTAGCCTGTTGAGCGAGAGCGAAACAAAAAACCACCTGCTACGCGGGTGGCGACAAAAAGTTATACAAAGAAAACACCTTTCCGGTTAAAGTAGA
GATGTTCAGGCTACTAAATTAACGGAAGGAAAGGTGTTTTCATGGCTAACAAAGAGTATAGCTTAGCACATACAAAATGGATGTGCAAGTATCATATCGT
CTTCACTCCTAAGTATAGAAGAAAAATAATCTATAATCAATATCGAGAAAGCATAGGAGAGATTCTAAAACAACTGTGTGGGTATAAGGGAGTAGAGGTG
ATTGAGGGGCATCTCATGCCGGATCATGTACACATGTTAGTAAGTATCCCGCCCAAGATAAGTGTGTCGAGTTTTATGGGATATTTAAAGGGAAAAAGCG
CGTTAATGATATTCGACAAACATGCCAATTTGAAATATAAGTTTGGCAATCGTCATTTTTGGGCGGAAGGGTATTATGTGAGCACAGTAGGGCTAAACGA
AGCGACCATAACGAAGTATATCCAAGAACAAGAAAAGCATGATATAGCCCTGGATAAATTAAGTGTGAAGGAGTATGAGGACCCCTTCAAGGGGTAGTAA
GCAATACAAATGTCCCTTTAGGGGCTGCAAAAGTGGCAAAGGCAAAGTAGCTTGAACGAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCCGGTAACAGAGG
CTTATAGCCTCAGAGCAAACCACCCGTTGGACGGGTGGTGATGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
466 bp151 aa142607+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MANKEYSLAHTKWMCKYHIVFTPKYRRKIIYNQYRESIGEILKQLCGYKGVEVIEGHLMPDHVHMLVSIPPKISVSSFMGYLKGKSALMIFDKHANLKYK
FGNRHFWAEGYYVSTVGLNEATITKYIQEQEKHDIALDKLSVKEYEDPFKG

 

Blast result :
Comments
ISDha13 is 94% aa similar to ISSsu4.
References
1] ISfinder annotation (2008)
2] Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H. (2006) J. Bacteriol. 188 (6), 2262-2274