ISDha13
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007907 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense Y51 |
DNA section
IS Length : 745 bp
Ends
Left end : GGGCTTTAGCCTGTTGAGCGAGAGCGAAACAAAAAACCACCTGCTACGCGGGTGGCGACAAAAAGTTATACAAAGAAAACACCTTTCCGGTTAAAGTAGA II struct. : Yes
Right end : AGTAGCTTGAACGAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCCGGTAACAGAGGCTTATAGCCTCAGAGCAAACCACCCGTTGGACGGGTGGTGATGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTTATCGTTAT | TTAT | TGTTTCATCTAGGTTCT | tgat |
DNA sequence
GGGCTTTAGCCTGTTGAGCGAGAGCGAAACAAAAAACCACCTGCTACGCGGGTGGCGACAAAAAGTTATACAAAGAAAACACCTTTCCGGTTAAAGTAGA
GATGTTCAGGCTACTAAATTAACGGAAGGAAAGGTGTTTTCATGGCTAACAAAGAGTATAGCTTAGCACATACAAAATGGATGTGCAAGTATCATATCGT
CTTCACTCCTAAGTATAGAAGAAAAATAATCTATAATCAATATCGAGAAAGCATAGGAGAGATTCTAAAACAACTGTGTGGGTATAAGGGAGTAGAGGTG
ATTGAGGGGCATCTCATGCCGGATCATGTACACATGTTAGTAAGTATCCCGCCCAAGATAAGTGTGTCGAGTTTTATGGGATATTTAAAGGGAAAAAGCG
CGTTAATGATATTCGACAAACATGCCAATTTGAAATATAAGTTTGGCAATCGTCATTTTTGGGCGGAAGGGTATTATGTGAGCACAGTAGGGCTAAACGA
AGCGACCATAACGAAGTATATCCAAGAACAAGAAAAGCATGATATAGCCCTGGATAAATTAAGTGTGAAGGAGTATGAGGACCCCTTCAAGGGGTAGTAA
GCAATACAAATGTCCCTTTAGGGGCTGCAAAAGTGGCAAAGGCAAAGTAGCTTGAACGAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCCGGTAACAGAGG
CTTATAGCCTCAGAGCAAACCACCCGTTGGACGGGTGGTGATGAT
GATGTTCAGGCTACTAAATTAACGGAAGGAAAGGTGTTTTCATGGCTAACAAAGAGTATAGCTTAGCACATACAAAATGGATGTGCAAGTATCATATCGT
CTTCACTCCTAAGTATAGAAGAAAAATAATCTATAATCAATATCGAGAAAGCATAGGAGAGATTCTAAAACAACTGTGTGGGTATAAGGGAGTAGAGGTG
ATTGAGGGGCATCTCATGCCGGATCATGTACACATGTTAGTAAGTATCCCGCCCAAGATAAGTGTGTCGAGTTTTATGGGATATTTAAAGGGAAAAAGCG
CGTTAATGATATTCGACAAACATGCCAATTTGAAATATAAGTTTGGCAATCGTCATTTTTGGGCGGAAGGGTATTATGTGAGCACAGTAGGGCTAAACGA
AGCGACCATAACGAAGTATATCCAAGAACAAGAAAAGCATGATATAGCCCTGGATAAATTAAGTGTGAAGGAGTATGAGGACCCCTTCAAGGGGTAGTAA
GCAATACAAATGTCCCTTTAGGGGCTGCAAAAGTGGCAAAGGCAAAGTAGCTTGAACGAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCCGGTAACAGAGG
CTTATAGCCTCAGAGCAAACCACCCGTTGGACGGGTGGTGATGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
466 bp | 151 aa | 142 | 607 | + | No |
Chemistry : Y1
ORF sequence :
MANKEYSLAHTKWMCKYHIVFTPKYRRKIIYNQYRESIGEILKQLCGYKGVEVIEGHLMPDHVHMLVSIPPKISVSSFMGYLKGKSALMIFDKHANLKYK
FGNRHFWAEGYYVSTVGLNEATITKYIQEQEKHDIALDKLSVKEYEDPFKG
FGNRHFWAEGYYVSTVGLNEATITKYIQEQEKHDIALDKLSVKEYEDPFKG
Blast result :
Comments
ISDha13 is 94% aa similar to ISSsu4.
References
1] ISfinder annotation (2008)
2] Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H. (2006) J. Bacteriol. 188 (6), 2262-2274
2] Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H. (2006) J. Bacteriol. 188 (6), 2262-2274