ISSsu4

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009443 ND Streptococcus suis
Streptococcus suis 98HAH33
DNA section
IS Length : 760 bp

Ends


Left end : TAATTATGTGACTTTTAGTCCGTCACGCTCCGTAAGGTGCGTGACAAATAAACCACCCGCTATGCGGGTGCGCGACGAAGGTTACACCAAAAAAACTCCA II struct. : Yes
Right end : TGAGGCTTGAACAAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCTGGTGATGTGGGCTTATAGCCCTTGTTCAAACCACCCGTTTGACGGGTGGTCATGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCCAAAGGTTTCTTTTTTAAGCAAGTTTTGATGCAAGtgat
GGGGGAACCCAAGTTTTTTTTTTTGAATATTTTTCACtgat
GTTCGCTCAGGCTTTTTTTTGAATATCGGATtgat

DNA sequence

TAATTATGTGACTTTTAGTCCGTCACGCTCCGTAAGGTGCGTGACAAATAAACCACCCGCTATGCGGGTGCGCGACGAAGGTTACACCAAAAAAACTCCA
AACGCGATACAATAAAGGTGTTCAAGCCTATTGTAAAGCGAAAGGAGAAAAATATGGCGCAAAAGGCACATAGTTTATCACATACAAAGTGGCTGTGTAA
ATACCACATTGTCTTCACACCTAAGTATAGACGAAAAATCATCTATAATCAATATCGAAGTAGTTTGGGAGAAATGTCCAGACGTTTGTGTACTTATAAA
GGCGTAAAAATTATCGAAGGACATCTGATGCCGGATCATGTTCATATGTTAGTCAGTATTCCTCCGCGATTAAGTGTATCAAGCTTTATAGGATATTTAA
AAGGTAAGAGTGCTCTAATGATGTTTGATAAACACGCCAATCTCAAATACAAATTTGGTAATCGTCATTTCTGGGCAGAGGGATATTATGTAAGTACGGT
TGGACTAAATGAAGCCACAATTAAGAAATATATACAAGAACAGGAAAAACATGATATAGCACTTGATAAGTTGAGTGTAAAAGAGTATGAAGATCCCTTT
AGGGATAATGGCAAGTAGTACGAATGCCTCTTTAAGAGGCTAGTGACGAGTCAAAAGCAGTGAGGCTTGAACAAAGTGAAAGCCAGCGTCTTTAGGCGCT
GGCTGGTGATGTGGGCTTATAGCCCTTGTTCAAACCACCCGTTTGACGGGTGGTCATGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
501 bp166 aa118618+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MFKPIVKRKEKNMAQKAHSLSHTKWLCKYHIVFTPKYRRKIIYNQYRSSLGEMSRRLCTYKGVKIIEGHLMPDHVHMLVSIPPRLSVSSFIGYLKGKSAL
MMFDKHANLKYKFGNRHFWAEGYYVSTVGLNEATIKKYIQEQEKHDIALDKLSVKEYEDPFRDNGK

 

Blast result :
Comments
ISSsu4 is 90% aa similar to ISPlu5.
References
1] ISfinder annotation (2008)
2] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2, E315