ISSsu4
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009443 | ND | Streptococcus suis | Streptococcus suis 98HAH33 |
DNA section
IS Length : 760 bp
Ends
Left end : TAATTATGTGACTTTTAGTCCGTCACGCTCCGTAAGGTGCGTGACAAATAAACCACCCGCTATGCGGGTGCGCGACGAAGGTTACACCAAAAAAACTCCA II struct. : Yes
Right end : TGAGGCTTGAACAAAGTGAAAGCCAGCGTCTTTAGGCGCTGGCTGGTGATGTGGGCTTATAGCCCTTGTTCAAACCACCCGTTTGACGGGTGGTCATGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCCAAAGGTTTCT | TTTT | TAAGCAAGTTTTGATGCAAG | tgat |
GGGGGAACCCAAG | TTTT | TTTTTTTGAATATTTTTCAC | tgat |
GTTCGCTCAGGCT | TTTT | TTTGAATATCGGAT | tgat |
DNA sequence
TAATTATGTGACTTTTAGTCCGTCACGCTCCGTAAGGTGCGTGACAAATAAACCACCCGCTATGCGGGTGCGCGACGAAGGTTACACCAAAAAAACTCCA
AACGCGATACAATAAAGGTGTTCAAGCCTATTGTAAAGCGAAAGGAGAAAAATATGGCGCAAAAGGCACATAGTTTATCACATACAAAGTGGCTGTGTAA
ATACCACATTGTCTTCACACCTAAGTATAGACGAAAAATCATCTATAATCAATATCGAAGTAGTTTGGGAGAAATGTCCAGACGTTTGTGTACTTATAAA
GGCGTAAAAATTATCGAAGGACATCTGATGCCGGATCATGTTCATATGTTAGTCAGTATTCCTCCGCGATTAAGTGTATCAAGCTTTATAGGATATTTAA
AAGGTAAGAGTGCTCTAATGATGTTTGATAAACACGCCAATCTCAAATACAAATTTGGTAATCGTCATTTCTGGGCAGAGGGATATTATGTAAGTACGGT
TGGACTAAATGAAGCCACAATTAAGAAATATATACAAGAACAGGAAAAACATGATATAGCACTTGATAAGTTGAGTGTAAAAGAGTATGAAGATCCCTTT
AGGGATAATGGCAAGTAGTACGAATGCCTCTTTAAGAGGCTAGTGACGAGTCAAAAGCAGTGAGGCTTGAACAAAGTGAAAGCCAGCGTCTTTAGGCGCT
GGCTGGTGATGTGGGCTTATAGCCCTTGTTCAAACCACCCGTTTGACGGGTGGTCATGAT
AACGCGATACAATAAAGGTGTTCAAGCCTATTGTAAAGCGAAAGGAGAAAAATATGGCGCAAAAGGCACATAGTTTATCACATACAAAGTGGCTGTGTAA
ATACCACATTGTCTTCACACCTAAGTATAGACGAAAAATCATCTATAATCAATATCGAAGTAGTTTGGGAGAAATGTCCAGACGTTTGTGTACTTATAAA
GGCGTAAAAATTATCGAAGGACATCTGATGCCGGATCATGTTCATATGTTAGTCAGTATTCCTCCGCGATTAAGTGTATCAAGCTTTATAGGATATTTAA
AAGGTAAGAGTGCTCTAATGATGTTTGATAAACACGCCAATCTCAAATACAAATTTGGTAATCGTCATTTCTGGGCAGAGGGATATTATGTAAGTACGGT
TGGACTAAATGAAGCCACAATTAAGAAATATATACAAGAACAGGAAAAACATGATATAGCACTTGATAAGTTGAGTGTAAAAGAGTATGAAGATCCCTTT
AGGGATAATGGCAAGTAGTACGAATGCCTCTTTAAGAGGCTAGTGACGAGTCAAAAGCAGTGAGGCTTGAACAAAGTGAAAGCCAGCGTCTTTAGGCGCT
GGCTGGTGATGTGGGCTTATAGCCCTTGTTCAAACCACCCGTTTGACGGGTGGTCATGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
501 bp | 166 aa | 118 | 618 | + | No |
Chemistry : Y1
ORF sequence :
MFKPIVKRKEKNMAQKAHSLSHTKWLCKYHIVFTPKYRRKIIYNQYRSSLGEMSRRLCTYKGVKIIEGHLMPDHVHMLVSIPPRLSVSSFIGYLKGKSAL
MMFDKHANLKYKFGNRHFWAEGYYVSTVGLNEATIKKYIQEQEKHDIALDKLSVKEYEDPFRDNGK
MMFDKHANLKYKFGNRHFWAEGYYVSTVGLNEATIKKYIQEQEKHDIALDKLSVKEYEDPFRDNGK
Blast result :
Comments
ISSsu4 is 90% aa similar to ISPlu5.
References
1] ISfinder annotation (2008)
2] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2, E315
2] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2, E315