ISTha1

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABKT01000001 ND Thauera sp.
Thauera sp. MZ1T
DNA section
IS Length : 1301 bp

Ends


IR Length : 20/25

IRL : CAGGGTCTCCGCACTCGGAATGCATTTTTCCTGATCGCATAGCCACCTGA
IRR : CAGGGCCTCCGCACTCGCCTAGCATATCGCCCGGATCCCCAGCATGCGCT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCAGAGCGACGTGTTCATGAATCGGGCGGTGGAGATCTCGGTTGGGTC10

DNA sequence

CAGGGTCTCCGCACTCGGAATGCATTTTTCCTGATCGCATAGCCACCTGAAAATCTTCGTTCACATTCAACACCTTATGCAGCCATCTTGTGGACCCTTC
GAAAATCACGTCTACTCTCGCCTTTTGGGCGAAGAGCGTGAGTGCGACGCAAAGGGGTTCCCTGATGAGCTATCTGGACGAAATCGATGATCCGCGCAAG
CCGAGCAACGGCACCTTGCACGACTTCCGGGAGATCCTGGTGATCCTGATCGCCGCTGTGCTCTCGGACTGCGACACGGTCGAGGACATCACCTTCTGGG
CGCGCACCAAGGAGGCGTGGCTGCGCCGCTTCCTCGTGCTCAAGAACGGCATCCCGTCCGAAGAGACGTTCCTGCGGATCCTGCGTGCGCTCGATCCGAA
GCAGTTCGAGAACATGTTCCGGCGCTGGGTGGGCGGCGTGGTCGGTGCGCTCAGCGACGATGCGGGCCTCGCCGGCACGATCGCAATTGACGGCAAGACC
GTGCGCGGCTCGGGCAGCGGCGGCGAGAGCGCGATCCACATGGTCAGCGCCTTCGCCACCGAGTTGGGACTGGTGCTCGGCCAGGAGAAGGTCGCCGCCA
AGAGCAACGAGATCACCGCGATTCCGGAGTTGCTGGAGGCGCTCTCGATCAAGGGGCTGCTGGTCACGATCGACGCCATGGGCTGCCAGAAAAGCATTGC
CAAACAGATCGTTGCGAAGAAAGGCGACTACCTGCTGATGGTCAAGGGCAACCAGCCCAAGCTGCTCGAAGCGATCGAGACCGCCTTCATCGATCAGCAC
GGCGTCGAGTCGGTCGACCGCAGTTCGCTGGTCGAGCGCGGCCACGGCCGCACCGTCGGGCAGATCGCCTCGGTGCTCTCGGCCAAGGGCATCGTCGATC
TGGCCGACTGGCCCAAGTGCGTGACGATCGGGCGCATCGACTCGATGCGGGTGGTCGGCGACAAGCAATCCGATCTCGAGCGGCGTTACTACATCAGTTC
GCGCGCACTGAGCGCCGAGCAACTGGCCGCAGCGATACGTGCGCATTGGGGTGTGGAGAACCGGCTTCATTGGATCCTCGATGTCAGCTTCAGCGAGGAC
GCCAGCACGGTGGCCAAGGACAACGCGCCGCAGAACCTTTCGCTGCTGCGCAAGATCGCGCTCAACATCATCCGTGCCGACAAGACCGACACGCGCAAGA
GCAGCCTTCGGCTCAAGCGCAAGGGGGCGGCGTGGGATGACGGGGTGCGGGAGCGCATGCTGGGGATCCGGGCGATATGCTAGGCGAGTGCGGAGGCCCT
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1119 bp372 aa1651283+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSYLDEIDDPRKPSNGTLHDFREILVILIAAVLSDCDTVEDITFWARTKEAWLRRFLVLKNGIPSEETFLRILRALDPKQFENMFRRWVGGVVGALSDDA
GLAGTIAIDGKTVRGSGSGGESAIHMVSAFATELGLVLGQEKVAAKSNEITAIPELLEALSIKGLLVTIDAMGCQKSIAKQIVAKKGDYLLMVKGNQPKL
LEAIETAFIDQHGVESVDRSSLVERGHGRTVGQIASVLSAKGIVDLADWPKCVTIGRIDSMRVVGDKQSDLERRYYISSRALSAEQLAAAIRAHWGVENR
LHWILDVSFSEDASTVAKDNAPQNLSLLRKIALNIIRADKTDTRKSSLRLKRKGAAWDDGVRERMLGIRAIC

 

Blast result :
Comments
ISTha1 is 60% aa similar to ISAzo8.
References
1] ISfinder annotation (2008)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Sayler,G.S. and Richardson,P. (2008) Direct submission genBank.