ISSpi2

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s) ISSwpII
Accession numberTranspositionOriginHost
NC_011566 ND Shewanella piezotolerans
Shewanella piezotolerans WP3
DNA section
IS Length : 1398 bp

Ends


IR Length : 14/22

IRL : acgaatgATATGGACTCCCCTTACCAATTGGCCACTATGTGCCATATTGA
IRR : ---ggctACATGGACTCCCCTTTGTCAAGCAATAGTAATCACACAAAAAC

Insertion site


Left flankDirect repeatRight flankDR Length
TAGAGGTATACTAATAATGG0
TAGAGGTATACTAATAATGG0
TTGAAACCTACATTTAAGGG0
GTATGCGGTATTACTAAGCG0
ATATGTGGTACTAACTAATG0
TTGGCAGCTACTAATAATGG0

DNA sequence

ACGAATGATATGGACTCCCCTTACCAATTGGCCACTATGTGCCATATTGAAAGTGCAAACATTCAATCAAGGAGAGTCCATATGTCCTTAATTAAAGCAA
TTGGCATCGATTTAGCCAAATTAGTTTTTAGTATTCATGGTGTTGACGAATACGGTAAAACTAAACTAAAGCAAACAGTTAAAAGAAACAAGCTGTTAGA
AAAAATCGCTAACATTCCACCCTGTATTATCGGGATGGAAGCTTGCTCTGGCGCTCACTACTGGGCAAGAGAGTTTACAAAATACGGCCACGACGTACGT
ATCATGGCATCTAAATTCGTTATTCCTTATCGCCAAAGTGAAAAGAATGACGCCAATGATGCTGAAGCCATTTGTGAGGCAGTGACTAGACCAAAAACAC
GCTTTGTTTGTATTAAAAGCGAAGAGCAACAAGCCGTTTTATGCCTACACCGCATTCGACAAGGCCAAATCAAAGACCGTACGGCGATGATAAACCGATT
ACGTGGCTTACTATCCGAGTTTGGTATTATTATGCCTAAAGGTCGTTATCCTGCTCAAAAGCATATTGTTGAAATTCTCGAGGATGCTGAGAACGGTTTG
CCTGATTTAGCCCGCGAACTACTCCATGATTTATGGCTGAGCATAAAACAACAAAACCAAGACATATTAAAGTCTGACCGAAAGCTCTATGCCCTTGCTA
ACCAGATGAAAGACGCTAAGCGGTTAATGACCATACCAGGTATTGGCGAAGTTACCGCAACAGCAGTAGTCGCGACAGTCAGTGATGCAAAACACTTCTC
AACTAGCCGCCAATTTGCAGCTTGGATAGGTTTGGTGCCGAAGCAGTATTCCACTGGCGGAAAGCCAACACTAGGTCGAATAAGTAAACGCGGTGAGAAG
CATATCCGCACCTCGCTAATCCATGGTGCTCGCGCTGTCATCGCAAACTGTGCCAATAAAATAGATAGAACTAGTTTATGGATTAAAGCCCTTATCGAGC
GAAGAGGTTTCAAAAGAGCTGTCATTGCTTTGGCAGCTAAAAATGCACGGCTAATTTGGTCATTATTGCAATCAGGACAAGAGTACCAAGTTAACTATGT
AAAAACGTAAAAAGGATTAACCCAAACGGTTAACCCCACCGAGTCGACGCATTAGCAATTGACGATAACACGGTCAGACCGAGAGCGATAGAATCTGGTT
AGTTGGGAAGTACATCTTTCTTGAAAGAGAAAGTAATACTGTTTAACGAATGAGATCTTTGCTCAAGCGCAAATCATCAGGGCGATAGCCAAAAGCTGTT
TAGGCAGCAAGCTAATCAAACGCCGAATGTAGAGCTGCTGTCAGATCCACTGTTTTTGTGTGATTACTATTGCTTGACAAAGGGGAGTCCATGTAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa821110+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSLIKAIGIDLAKLVFSIHGVDEYGKTKLKQTVKRNKLLEKIANIPPCIIGMEACSGAHYWAREFTKYGHDVRIMASKFVIPYRQSEKNDANDAEAICEA
VTRPKTRFVCIKSEEQQAVLCLHRIRQGQIKDRTAMINRLRGLLSEFGIIMPKGRYPAQKHIVEILEDAENGLPDLARELLHDLWLSIKQQNQDILKSDR
KLYALANQMKDAKRLMTIPGIGEVTATAVVATVSDAKHFSTSRQFAAWIGLVPKQYSTGGKPTLGRISKRGEKHIRTSLIHGARAVIANCANKIDRTSLW
IKALIERRGFKRAVIALAAKNARLIWSLLQSGQEYQVNYVKT

 

Blast result :
Comments
There are 3 intact and 7 degenerate copies of ISSpi2 encoded in the Shewanella piezotolerans genome. The transposase encoded by ISSpi2 has 55% identity to that encoded by ISVisp6.
References
1] Romine, M. (2008) Direct submission
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E1937