ISSpi2
- Family IS110
- Group IS1111
Isoform Synonym(s) ISSwpII
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011566 | ND | Shewanella piezotolerans | Shewanella piezotolerans WP3 |
DNA section
IS Length : 1398 bp
Ends
IR Length : 14/22
IRL : acgaatgATATGGACTCCCCTTACCAATTGGCCACTATGTGCCATATTGA
IRR : ---ggctACATGGACTCCCCTTTGTCAAGCAATAGTAATCACACAAAAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGAGGTATA | CTAATAATGG | 0 | |
TAGAGGTATA | CTAATAATGG | 0 | |
TTGAAACCTA | CATTTAAGGG | 0 | |
GTATGCGGTA | TTACTAAGCG | 0 | |
ATATGTGGTA | CTAACTAATG | 0 | |
TTGGCAGCTA | CTAATAATGG | 0 |
DNA sequence
ACGAATGATATGGACTCCCCTTACCAATTGGCCACTATGTGCCATATTGAAAGTGCAAACATTCAATCAAGGAGAGTCCATATGTCCTTAATTAAAGCAA
TTGGCATCGATTTAGCCAAATTAGTTTTTAGTATTCATGGTGTTGACGAATACGGTAAAACTAAACTAAAGCAAACAGTTAAAAGAAACAAGCTGTTAGA
AAAAATCGCTAACATTCCACCCTGTATTATCGGGATGGAAGCTTGCTCTGGCGCTCACTACTGGGCAAGAGAGTTTACAAAATACGGCCACGACGTACGT
ATCATGGCATCTAAATTCGTTATTCCTTATCGCCAAAGTGAAAAGAATGACGCCAATGATGCTGAAGCCATTTGTGAGGCAGTGACTAGACCAAAAACAC
GCTTTGTTTGTATTAAAAGCGAAGAGCAACAAGCCGTTTTATGCCTACACCGCATTCGACAAGGCCAAATCAAAGACCGTACGGCGATGATAAACCGATT
ACGTGGCTTACTATCCGAGTTTGGTATTATTATGCCTAAAGGTCGTTATCCTGCTCAAAAGCATATTGTTGAAATTCTCGAGGATGCTGAGAACGGTTTG
CCTGATTTAGCCCGCGAACTACTCCATGATTTATGGCTGAGCATAAAACAACAAAACCAAGACATATTAAAGTCTGACCGAAAGCTCTATGCCCTTGCTA
ACCAGATGAAAGACGCTAAGCGGTTAATGACCATACCAGGTATTGGCGAAGTTACCGCAACAGCAGTAGTCGCGACAGTCAGTGATGCAAAACACTTCTC
AACTAGCCGCCAATTTGCAGCTTGGATAGGTTTGGTGCCGAAGCAGTATTCCACTGGCGGAAAGCCAACACTAGGTCGAATAAGTAAACGCGGTGAGAAG
CATATCCGCACCTCGCTAATCCATGGTGCTCGCGCTGTCATCGCAAACTGTGCCAATAAAATAGATAGAACTAGTTTATGGATTAAAGCCCTTATCGAGC
GAAGAGGTTTCAAAAGAGCTGTCATTGCTTTGGCAGCTAAAAATGCACGGCTAATTTGGTCATTATTGCAATCAGGACAAGAGTACCAAGTTAACTATGT
AAAAACGTAAAAAGGATTAACCCAAACGGTTAACCCCACCGAGTCGACGCATTAGCAATTGACGATAACACGGTCAGACCGAGAGCGATAGAATCTGGTT
AGTTGGGAAGTACATCTTTCTTGAAAGAGAAAGTAATACTGTTTAACGAATGAGATCTTTGCTCAAGCGCAAATCATCAGGGCGATAGCCAAAAGCTGTT
TAGGCAGCAAGCTAATCAAACGCCGAATGTAGAGCTGCTGTCAGATCCACTGTTTTTGTGTGATTACTATTGCTTGACAAAGGGGAGTCCATGTAGCC
TTGGCATCGATTTAGCCAAATTAGTTTTTAGTATTCATGGTGTTGACGAATACGGTAAAACTAAACTAAAGCAAACAGTTAAAAGAAACAAGCTGTTAGA
AAAAATCGCTAACATTCCACCCTGTATTATCGGGATGGAAGCTTGCTCTGGCGCTCACTACTGGGCAAGAGAGTTTACAAAATACGGCCACGACGTACGT
ATCATGGCATCTAAATTCGTTATTCCTTATCGCCAAAGTGAAAAGAATGACGCCAATGATGCTGAAGCCATTTGTGAGGCAGTGACTAGACCAAAAACAC
GCTTTGTTTGTATTAAAAGCGAAGAGCAACAAGCCGTTTTATGCCTACACCGCATTCGACAAGGCCAAATCAAAGACCGTACGGCGATGATAAACCGATT
ACGTGGCTTACTATCCGAGTTTGGTATTATTATGCCTAAAGGTCGTTATCCTGCTCAAAAGCATATTGTTGAAATTCTCGAGGATGCTGAGAACGGTTTG
CCTGATTTAGCCCGCGAACTACTCCATGATTTATGGCTGAGCATAAAACAACAAAACCAAGACATATTAAAGTCTGACCGAAAGCTCTATGCCCTTGCTA
ACCAGATGAAAGACGCTAAGCGGTTAATGACCATACCAGGTATTGGCGAAGTTACCGCAACAGCAGTAGTCGCGACAGTCAGTGATGCAAAACACTTCTC
AACTAGCCGCCAATTTGCAGCTTGGATAGGTTTGGTGCCGAAGCAGTATTCCACTGGCGGAAAGCCAACACTAGGTCGAATAAGTAAACGCGGTGAGAAG
CATATCCGCACCTCGCTAATCCATGGTGCTCGCGCTGTCATCGCAAACTGTGCCAATAAAATAGATAGAACTAGTTTATGGATTAAAGCCCTTATCGAGC
GAAGAGGTTTCAAAAGAGCTGTCATTGCTTTGGCAGCTAAAAATGCACGGCTAATTTGGTCATTATTGCAATCAGGACAAGAGTACCAAGTTAACTATGT
AAAAACGTAAAAAGGATTAACCCAAACGGTTAACCCCACCGAGTCGACGCATTAGCAATTGACGATAACACGGTCAGACCGAGAGCGATAGAATCTGGTT
AGTTGGGAAGTACATCTTTCTTGAAAGAGAAAGTAATACTGTTTAACGAATGAGATCTTTGCTCAAGCGCAAATCATCAGGGCGATAGCCAAAAGCTGTT
TAGGCAGCAAGCTAATCAAACGCCGAATGTAGAGCTGCTGTCAGATCCACTGTTTTTGTGTGATTACTATTGCTTGACAAAGGGGAGTCCATGTAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 82 | 1110 | + | No |
Chemistry : DEDD
ORF sequence :
MSLIKAIGIDLAKLVFSIHGVDEYGKTKLKQTVKRNKLLEKIANIPPCIIGMEACSGAHYWAREFTKYGHDVRIMASKFVIPYRQSEKNDANDAEAICEA
VTRPKTRFVCIKSEEQQAVLCLHRIRQGQIKDRTAMINRLRGLLSEFGIIMPKGRYPAQKHIVEILEDAENGLPDLARELLHDLWLSIKQQNQDILKSDR
KLYALANQMKDAKRLMTIPGIGEVTATAVVATVSDAKHFSTSRQFAAWIGLVPKQYSTGGKPTLGRISKRGEKHIRTSLIHGARAVIANCANKIDRTSLW
IKALIERRGFKRAVIALAAKNARLIWSLLQSGQEYQVNYVKT
VTRPKTRFVCIKSEEQQAVLCLHRIRQGQIKDRTAMINRLRGLLSEFGIIMPKGRYPAQKHIVEILEDAENGLPDLARELLHDLWLSIKQQNQDILKSDR
KLYALANQMKDAKRLMTIPGIGEVTATAVVATVSDAKHFSTSRQFAAWIGLVPKQYSTGGKPTLGRISKRGEKHIRTSLIHGARAVIANCANKIDRTSLW
IKALIERRGFKRAVIALAAKNARLIWSLLQSGQEYQVNYVKT
Blast result :
Comments
There are 3 intact and 7 degenerate copies of ISSpi2 encoded in the Shewanella piezotolerans genome. The transposase encoded by ISSpi2 has 55% identity to that encoded by ISVisp6.
References
1] Romine, M. (2008) Direct submission
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E1937
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E1937