ISPat1
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudoalteromonas atlantica | Pseudoalteromonas atlantica |
DNA section
IS Length : 1325 bp
Ends
IR Length : 14/18
IRL : CTAACGAATCCCCTCATAATTATGAGCAGAAACAATAACATAGACACGCA
IRR : CTGGGGGATCCCCTCATAGAATTGGTCTTCCTTCTTTGTGAACCCAGGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCAACCTAA | CGCCCTAAT | AACGGGCAAA | 9 |
ACAAACTTAA | CGCCAAGCG | TAACGTCACA | 9 |
TCGCCTTCAA | GGTTGCACT | ATGGATTAGT | 9 |
TTACACCTAA | CGCTTAACA | TATGGGGATT | 9 |
TGCGGTATAA | CGCTTCGAA | TATAAGGCGA | 9 |
TGATGTATAA | CGCCCGCST | AACACGCAAT | 9 |
DNA sequence
CTAACGAATCCCCTCATAATTATGAGCAGAAACAATAACATAGACACGCATAGCGCCATTTGATCTAATAAATTTCGCCAAAAACCAACTAGATAACAAC
ACCATGCGTGATATTCATATCTTACACGATTTGCTTAAAAAACAATGCCCTAATCTACATGCCAAACGTCTTTCCTCTTTGATGGTTGCCACCCAATCTT
TGCTAGATGGTCAGCAACTGTCGTTGACCGAATTAGGACGCAATATCTCAGGCTCCGTGGCCCCGAAACACAACATTAAACGCATCGACAGGCTGCTTGG
TAATAACAACCTACATAATGAACGGCTCGACATCTATCGTTGGCACGCAAAGCTACTTTGCGGTGCTAACCCCATGCCCGTTGTCCTTGTGGATTGGTCT
GATGTGCGTGAGCAGCTCAGGCATTTAACCTTACGTGCATCGGTCAGTGTTCAAGGACGCTCTGTCACGCTTTATGAGCGCGTATTTTCATTCGGTGAAT
ACAATTCACCTGTTAGTCATAATCCGTTTTTACGGGAGTTGGCGAGTATCCTGCCGTCGGGTTGTTGCCCGTTGATTGTGACCGATGCAGGCTATCGTAA
CCCTTGGTTTCGTGAAGTCGAAAAGCATGGATGGTTCTGGCTAGGCCGAGTGCGCGGTGATGTGGGATTTAAGCGGGATGGGCAAGCATCATGGCAAAGT
AATAAGTCGTTTTATCCCAGTGCAAATTCTCGGGCCAAATACCTTGGGTGTGGGCAATTAGGGCGTAAAAGCCCGCTTCATGCACACCTACATTTGTACA
AAGCAAAGGCCAAACATCGAAAGGATAAACGCTCTTCAAAGGCAGGGCGAAACCACACCGCCCAGCAAAGCTATCGTGCGGGTAGCAAAGAGCCTTGGCT
ACTCGCCACTAACCTTCCCGAGAACGATAAACTTAACTCAAAACAGCTGGTTTCTCTTTACGCAAGACGAATGCAAATAGAAGAAACCTTCCGCGATATT
AAAAGCCCTCAATACGGCATGGGACTGCGCCACAGCAACAGTCGCAGTACCAAACGATTCGACATATTACTGCTGATAGCGATGCTCGCAGAATGGCTAT
TACGGCTACTCGGTATCATCGCCGTGAAGCAAAACTGGGAAAGAGCATTTCAAGCTAACACCATCCGTCGTCGGCGCGTGTTATCTATTATTAGGCTAGG
CAGAGAAGTCAGGAAAAGGGCAAAAGATTACAGGATGAACTCAGCCCAAATGACATGGGCTATCGCCCAATATATTACCTGGGTTCACAAAGAAGGAAGA
CCAATTCTATGAGGGGATCCCCCAG
ACCATGCGTGATATTCATATCTTACACGATTTGCTTAAAAAACAATGCCCTAATCTACATGCCAAACGTCTTTCCTCTTTGATGGTTGCCACCCAATCTT
TGCTAGATGGTCAGCAACTGTCGTTGACCGAATTAGGACGCAATATCTCAGGCTCCGTGGCCCCGAAACACAACATTAAACGCATCGACAGGCTGCTTGG
TAATAACAACCTACATAATGAACGGCTCGACATCTATCGTTGGCACGCAAAGCTACTTTGCGGTGCTAACCCCATGCCCGTTGTCCTTGTGGATTGGTCT
GATGTGCGTGAGCAGCTCAGGCATTTAACCTTACGTGCATCGGTCAGTGTTCAAGGACGCTCTGTCACGCTTTATGAGCGCGTATTTTCATTCGGTGAAT
ACAATTCACCTGTTAGTCATAATCCGTTTTTACGGGAGTTGGCGAGTATCCTGCCGTCGGGTTGTTGCCCGTTGATTGTGACCGATGCAGGCTATCGTAA
CCCTTGGTTTCGTGAAGTCGAAAAGCATGGATGGTTCTGGCTAGGCCGAGTGCGCGGTGATGTGGGATTTAAGCGGGATGGGCAAGCATCATGGCAAAGT
AATAAGTCGTTTTATCCCAGTGCAAATTCTCGGGCCAAATACCTTGGGTGTGGGCAATTAGGGCGTAAAAGCCCGCTTCATGCACACCTACATTTGTACA
AAGCAAAGGCCAAACATCGAAAGGATAAACGCTCTTCAAAGGCAGGGCGAAACCACACCGCCCAGCAAAGCTATCGTGCGGGTAGCAAAGAGCCTTGGCT
ACTCGCCACTAACCTTCCCGAGAACGATAAACTTAACTCAAAACAGCTGGTTTCTCTTTACGCAAGACGAATGCAAATAGAAGAAACCTTCCGCGATATT
AAAAGCCCTCAATACGGCATGGGACTGCGCCACAGCAACAGTCGCAGTACCAAACGATTCGACATATTACTGCTGATAGCGATGCTCGCAGAATGGCTAT
TACGGCTACTCGGTATCATCGCCGTGAAGCAAAACTGGGAAAGAGCATTTCAAGCTAACACCATCCGTCGTCGGCGCGTGTTATCTATTATTAGGCTAGG
CAGAGAAGTCAGGAAAAGGGCAAAAGATTACAGGATGAACTCAGCCCAAATGACATGGGCTATCGCCCAATATATTACCTGGGTTCACAAAGAAGGAAGA
CCAATTCTATGAGGGGATCCCCCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 104 | 1312 | + | No |
Chemistry : DDE
ORF sequence :
MRDIHILHDLLKKQCPNLHAKRLSSLMVATQSLLDGQQLSLTELGRNISGSVAPKHNIKRIDRLLGNNNLHNERLDIYRWHAKLLCGANPMPVVLVDWSD
VREQLRHLTLRASVSVQGRSVTLYERVFSFGEYNSPVSHNPFLRELASILPSGCCPLIVTDAGYRNPWFREVEKHGWFWLGRVRGDVGFKRDGQASWQSN
KSFYPSANSRAKYLGCGQLGRKSPLHAHLHLYKAKAKHRKDKRSSKAGRNHTAQQSYRAGSKEPWLLATNLPENDKLNSKQLVSLYARRMQIEETFRDIK
SPQYGMGLRHSNSRSTKRFDILLLIAMLAEWLLRLLGIIAVKQNWERAFQANTIRRRRVLSIIRLGREVRKRAKDYRMNSAQMTWAIAQYITWVHKEGRP
IL
VREQLRHLTLRASVSVQGRSVTLYERVFSFGEYNSPVSHNPFLRELASILPSGCCPLIVTDAGYRNPWFREVEKHGWFWLGRVRGDVGFKRDGQASWQSN
KSFYPSANSRAKYLGCGQLGRKSPLHAHLHLYKAKAKHRKDKRSSKAGRNHTAQQSYRAGSKEPWLLATNLPENDKLNSKQLVSLYARRMQIEETFRDIK
SPQYGMGLRHSNSRSTKRFDILLLIAMLAEWLLRLLGIIAVKQNWERAFQANTIRRRRVLSIIRLGREVRKRAKDYRMNSAQMTWAIAQYITWVHKEGRP
IL
Blast result :
Comments
This IS element is in the IS4 family, IS10 group. It is most similar to ISSde1; the predicted transposase of this new element has 65% identity and 76% similarity at the amino acid level with the predicted transposase of ISSde1. It also has an 18 bp imperfect IR and gives a 9 bp DR of target sequence. There are nine complete copies/isoforms in the P. atlantica (T6c) genome.
References
1] Higgins, B., Popkowski, A., Caruana, P., and Karls, A. Submitted 2008.