ISShha2

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010334 ND Shewanella halifaxens
Shewanella halifaxens
DNA section
IS Length : 1348 bp

Ends


IR Length : 21/22

IRL : GGCTCTTCTCTGCTTACATGAGTCTATTCATATCAAAGATCATAAATAAC
IRR : GGCTCTTCTCCGCTTACATGAGCTTGATATTTGGATAAAAGGTTGAATGG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTACCATTAGGTAAAATATGGCTAAA7

DNA sequence

GGCTCTTCTCTGCTTACATGAGTCTATTCATATCAAAGATCATAAATAACATTATCATTTACAACACTTTCTTATTTGTGAATAAGTGAATATACCTTGC
CATCATTATCATCCGCCCTATTTAGCTTTAAAGGGCAATGTGTGCAGTCCTTTTCTATAGAACAAGGCTCTCATTCTATTCTTGTACGATGCCGCCGAGA
CGGACGGTTTAAAGTTAAAGAACCAAGAACTGAAAGGCGATGTACAGTTGATCACTATGTAAGAAGACGGGTACACGATCTACCTGTTAGTGGACGTCCT
TGTAACATCGAAGTCGAACTCGCTCAGACCAGAGATAAAGACGGAAGAAGGTTAATTGAGGCGACTGAATACGTTGCAAAAGGAGCGCGATATACCATTC
GCTTCTGTCAGTTCATTAGCGGATTGTGCCGATACATGAGCATTCACGCAGTCTCTCAACATTTAGGTATTCGTTGGGAGACGATAAAAAACATTGATAA
GGAATATCTACATTCAACCTTACCAGGCTTGGAGCCCGCTAAGCTTAACAACTTAATCCATATTGGCGTTGATGAGGTAGCCCGAGCTAAAGGACATGAC
TATATGACCGTGGTATACGATTTGGTTTCTGGTCATTTAATTTGGGTCGAACACGGTAGAAAAGCAGCGGTCCTAATTTCGTTCTTCGAGCAACTATCAA
CCGCGACGAAAGACGGTATTAAAGCGGTTTCAATGGATATGGGTCAGCCTTATCAATCCGCAGTAAGAAAAATGCTGCCTAACGCCGATATCGTTTTCGA
CCGATTTCATGTGATGCAAAACTACGGCCTGTTAATCAAAAAAGAACGCTCCAAAGCCTTTCGAAATGGTTCTCATGAAGAGAAAAAGATGCTCAAAGGA
ACGTTGTTCCTATTGCTGAAAAACGCCCATAAACTGGATGAGGGGCAGTCAGATAGGCTTGGTGACTTACTCGAGAGTAACAAGACTCTCTGCATCGTTT
ATATGCTGAAAGAGCAGTTACAAGCGATATGGGATGAAGCGTGTTACAAGTCGATGGTAATGGCACTTGAAGCTTGGTGCGGTCTTGCTAGGTCAACGAG
GATATTGTCCTTGTGTAATTATGCAGACGCACTATTGGATAGAAAAGTCGGCATCTGCAATTACGCAAAATATAGATTAACCAACGCTCGAGTTGAAGCA
GGGAATGTCTCTATTGGTTTACTCAGGCGAAGAGCTCGAGGGATCCGAGACATTGAATACTTCAAACTCAAGATCAGACAAACATCAGTCCCTGATAACC
ATTCAACCTTTTATCCAAATATCAAGCTCATGTAAGCGGAGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1194 bp397 aa1421335+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVELAQTRDKDGRRLIEATEYVAKGARYTIRFCQFISGLCRYMS
IHAVSQHLGIRWETIKNIDKEYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYDLVSGHLIWVEHGRKAAVLISFFEQLSTATKDGIKAVSMDM
GQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAFRNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEA
CYKSMVMALEAWCGLARSTRILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGLLRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM

 

Blast result :
Comments
There is one copy of this element encoded in the Shewanella halifaxens genome. The transposase encoded by ISShha2 has 37% identity to that encoded by ISArch12. The ends of this element were predicted by comparison to those present in other members of the ISL3 family.
References
1] Romine, M. F. (2008) Direct submission.