ISShha2
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010334 | ND | Shewanella halifaxens | Shewanella halifaxens |
DNA section
IS Length : 1348 bp
Ends
IR Length : 21/22
IRL : GGCTCTTCTCTGCTTACATGAGTCTATTCATATCAAAGATCATAAATAAC
IRR : GGCTCTTCTCCGCTTACATGAGCTTGATATTTGGATAAAAGGTTGAATGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTACCATTA | GGTAAAA | TATGGCTAAA | 7 |
DNA sequence
GGCTCTTCTCTGCTTACATGAGTCTATTCATATCAAAGATCATAAATAACATTATCATTTACAACACTTTCTTATTTGTGAATAAGTGAATATACCTTGC
CATCATTATCATCCGCCCTATTTAGCTTTAAAGGGCAATGTGTGCAGTCCTTTTCTATAGAACAAGGCTCTCATTCTATTCTTGTACGATGCCGCCGAGA
CGGACGGTTTAAAGTTAAAGAACCAAGAACTGAAAGGCGATGTACAGTTGATCACTATGTAAGAAGACGGGTACACGATCTACCTGTTAGTGGACGTCCT
TGTAACATCGAAGTCGAACTCGCTCAGACCAGAGATAAAGACGGAAGAAGGTTAATTGAGGCGACTGAATACGTTGCAAAAGGAGCGCGATATACCATTC
GCTTCTGTCAGTTCATTAGCGGATTGTGCCGATACATGAGCATTCACGCAGTCTCTCAACATTTAGGTATTCGTTGGGAGACGATAAAAAACATTGATAA
GGAATATCTACATTCAACCTTACCAGGCTTGGAGCCCGCTAAGCTTAACAACTTAATCCATATTGGCGTTGATGAGGTAGCCCGAGCTAAAGGACATGAC
TATATGACCGTGGTATACGATTTGGTTTCTGGTCATTTAATTTGGGTCGAACACGGTAGAAAAGCAGCGGTCCTAATTTCGTTCTTCGAGCAACTATCAA
CCGCGACGAAAGACGGTATTAAAGCGGTTTCAATGGATATGGGTCAGCCTTATCAATCCGCAGTAAGAAAAATGCTGCCTAACGCCGATATCGTTTTCGA
CCGATTTCATGTGATGCAAAACTACGGCCTGTTAATCAAAAAAGAACGCTCCAAAGCCTTTCGAAATGGTTCTCATGAAGAGAAAAAGATGCTCAAAGGA
ACGTTGTTCCTATTGCTGAAAAACGCCCATAAACTGGATGAGGGGCAGTCAGATAGGCTTGGTGACTTACTCGAGAGTAACAAGACTCTCTGCATCGTTT
ATATGCTGAAAGAGCAGTTACAAGCGATATGGGATGAAGCGTGTTACAAGTCGATGGTAATGGCACTTGAAGCTTGGTGCGGTCTTGCTAGGTCAACGAG
GATATTGTCCTTGTGTAATTATGCAGACGCACTATTGGATAGAAAAGTCGGCATCTGCAATTACGCAAAATATAGATTAACCAACGCTCGAGTTGAAGCA
GGGAATGTCTCTATTGGTTTACTCAGGCGAAGAGCTCGAGGGATCCGAGACATTGAATACTTCAAACTCAAGATCAGACAAACATCAGTCCCTGATAACC
ATTCAACCTTTTATCCAAATATCAAGCTCATGTAAGCGGAGAAGAGCC
CATCATTATCATCCGCCCTATTTAGCTTTAAAGGGCAATGTGTGCAGTCCTTTTCTATAGAACAAGGCTCTCATTCTATTCTTGTACGATGCCGCCGAGA
CGGACGGTTTAAAGTTAAAGAACCAAGAACTGAAAGGCGATGTACAGTTGATCACTATGTAAGAAGACGGGTACACGATCTACCTGTTAGTGGACGTCCT
TGTAACATCGAAGTCGAACTCGCTCAGACCAGAGATAAAGACGGAAGAAGGTTAATTGAGGCGACTGAATACGTTGCAAAAGGAGCGCGATATACCATTC
GCTTCTGTCAGTTCATTAGCGGATTGTGCCGATACATGAGCATTCACGCAGTCTCTCAACATTTAGGTATTCGTTGGGAGACGATAAAAAACATTGATAA
GGAATATCTACATTCAACCTTACCAGGCTTGGAGCCCGCTAAGCTTAACAACTTAATCCATATTGGCGTTGATGAGGTAGCCCGAGCTAAAGGACATGAC
TATATGACCGTGGTATACGATTTGGTTTCTGGTCATTTAATTTGGGTCGAACACGGTAGAAAAGCAGCGGTCCTAATTTCGTTCTTCGAGCAACTATCAA
CCGCGACGAAAGACGGTATTAAAGCGGTTTCAATGGATATGGGTCAGCCTTATCAATCCGCAGTAAGAAAAATGCTGCCTAACGCCGATATCGTTTTCGA
CCGATTTCATGTGATGCAAAACTACGGCCTGTTAATCAAAAAAGAACGCTCCAAAGCCTTTCGAAATGGTTCTCATGAAGAGAAAAAGATGCTCAAAGGA
ACGTTGTTCCTATTGCTGAAAAACGCCCATAAACTGGATGAGGGGCAGTCAGATAGGCTTGGTGACTTACTCGAGAGTAACAAGACTCTCTGCATCGTTT
ATATGCTGAAAGAGCAGTTACAAGCGATATGGGATGAAGCGTGTTACAAGTCGATGGTAATGGCACTTGAAGCTTGGTGCGGTCTTGCTAGGTCAACGAG
GATATTGTCCTTGTGTAATTATGCAGACGCACTATTGGATAGAAAAGTCGGCATCTGCAATTACGCAAAATATAGATTAACCAACGCTCGAGTTGAAGCA
GGGAATGTCTCTATTGGTTTACTCAGGCGAAGAGCTCGAGGGATCCGAGACATTGAATACTTCAAACTCAAGATCAGACAAACATCAGTCCCTGATAACC
ATTCAACCTTTTATCCAAATATCAAGCTCATGTAAGCGGAGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1194 bp | 397 aa | 142 | 1335 | + | No |
Chemistry : Unknow
ORF sequence :
MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVELAQTRDKDGRRLIEATEYVAKGARYTIRFCQFISGLCRYMS
IHAVSQHLGIRWETIKNIDKEYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYDLVSGHLIWVEHGRKAAVLISFFEQLSTATKDGIKAVSMDM
GQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAFRNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEA
CYKSMVMALEAWCGLARSTRILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGLLRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM
IHAVSQHLGIRWETIKNIDKEYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYDLVSGHLIWVEHGRKAAVLISFFEQLSTATKDGIKAVSMDM
GQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAFRNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEA
CYKSMVMALEAWCGLARSTRILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGLLRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM
Blast result :
Comments
There is one copy of this element encoded in the Shewanella halifaxens genome. The transposase encoded by ISShha2 has 37% identity to that encoded by ISArch12. The ends of this element were predicted by comparison to those present in other members of the ISL3 family.
References
1] Romine, M. F. (2008) Direct submission.