ISSpe4

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009901 ND Shewanella pealeana
Shewanella pealeana ATCC 700345
DNA section
IS Length : 1364 bp

Ends


IR Length : 6/8

IRL : TATCCCGTGTAGATAATTGGACTCCCCACTCTTTAATTCGTTACGGTATA
IRR : CCCTGAAATCGAAGCCCGCAGCCGTATCTTATGTGGACTCCCCTGTGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCACGAACTGAGTGATAA0
TTCCACCAATATGAAACCGC0
ACGCACCTAGTGAGGTATCT0

DNA sequence

TATCCCGTGTAGATAATTGGACTCCCCACTCTTTAATTCGTTACGGTATAAGTCAATTCTCACGAGATTTCGGAGTTTAAAATGAAAGGTACGATTGTTG
GCGTTGATCTGGCTAAAAATGTAATTCAAGTTTGTGTCTTCACAAATAACAAGGTGCACTCAAATACTGAAATGACACCGAATGAATTTATCGACTGGCT
GGCTAACTTTGCCACCGTAACCATCGTGTTCGAAGCTTGTGGAATGTCTAATTACTGGAAACAAAAAGCAATGACGTTTGGCCATGAGGCTAAGTTAATT
TCAGCAAAGTTAGTCTCAGCTGTCAGGCAAAATCAAAAAACAGACAAAAATGATGCTTTAGCGATTGTTCAGGCGGCACTCTTGCCCGAGGTCAACTTCA
TCACGGGTAAATCAGTCGAGCAGCAGCAACTGCAATCTATTATGAGACTACGAGAGCTGGCTATTAAACAAAAAACGGCGATGACTAACCAGCTCACTTC
ATTATTAGCAGAGTTTAATCTGATGACGTCAACCAAACATGGCGGCTTACGCGGTGTGATTGAATCAACGTTAGAAGACGCTGAAAATGATTTTTCTTCT
GAGTTTCGTAACGCTCTTGCGGCGGCCTGGCAACAGTATTTAGCTGTCGTCACATCTATAGCAACTTATGACCAGTGCTTGGAAAAGTCACTTAACACTC
ATCCTGAGGCTAAAAAACTATTAAAAATTGAAGGGGTGGGTACTCTCAATGCTATTAATCTTTATATCGCATTAGGTTGCGCTGATATTGGTGTTGTTTC
CACAGGAAAAGATGCATCTGCCTGTATTGGATTAACGCCGATTCAATATTCTTCAGGTGGAAAGGCCAAACTGGGGTCCATAGGAAAACACGTTAAGAAT
AGCATTCTCAGAAGCCAGTTAATCACAGGTGCGTTGTCAGCGGTTAGTCAAATGGTCAAAAGAGAACCCAAAACGACGAAGGAGCGCTGGGTTCAGGCTT
TGGTTGAGCGACGGGGTAAGAAATGCGCCGCGGTGGCGTTAGCCAATAAGACGGTCAGAACTGCCTATGCCATGCTTACACAGGGTACAGAATATAAAGC
AGAGTTAATTTCAGCGTAAAAGCGTTCAAACAACAAAAATGCACAATCGAAGATTAAAATCAGCCAGTTAAGGTAGCCCGTATCAAAGAGTCTTGAACTC
GTCGTGTAGAATTATCAACTGGTTCGCGTAAATATCATAGAGCCTGAGTTCGCTACTCAATTGAGAGCTCGTACATAAGTTCGCATTTATTCTTTAAGAG
TGCCTGTTTGTTGTTGACACAGGGGAGTCCACATAAGATACGGCTGCGGGCTTCGATTTCAGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1038 bp345 aa821119+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKGTIVGVDLAKNVIQVCVFTNNKVHSNTEMTPNEFIDWLANFATVTIVFEACGMSNYWKQKAMTFGHEAKLISAKLVSAVRQNQKTDKNDALAIVQAAL
LPEVNFITGKSVEQQQLQSIMRLRELAIKQKTAMTNQLTSLLAEFNLMTSTKHGGLRGVIESTLEDAENDFSSEFRNALAAAWQQYLAVVTSIATYDQCL
EKSLNTHPEAKKLLKIEGVGTLNAINLYIALGCADIGVVSTGKDASACIGLTPIQYSSGGKAKLGSIGKHVKNSILRSQLITGALSAVSQMVKREPKTTK
ERWVQALVERRGKKCAAVALANKTVRTAYAMLTQGTEYKAELISA

 

Blast result :
Comments
There are 3 copies of ISSpe4 encoded in the Shewanella pealeana genome.
The transposase encoded by ISSpe4 has 44% identity to that encoded by ISCps1.
References
1] Romine, M. F. (2008) Direct submission.