ISSpe4
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009901 | ND | Shewanella pealeana | Shewanella pealeana ATCC 700345 |
DNA section
IS Length : 1364 bp
Ends
IR Length : 6/8
IRL : TATCCCGTGTAGATAATTGGACTCCCCACTCTTTAATTCGTTACGGTATA
IRR : CCCTGAAATCGAAGCCCGCAGCCGTATCTTATGTGGACTCCCCTGTGTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCACGAAC | TGAGTGATAA | 0 | |
TTCCACCAAT | ATGAAACCGC | 0 | |
ACGCACCTAG | TGAGGTATCT | 0 |
DNA sequence
TATCCCGTGTAGATAATTGGACTCCCCACTCTTTAATTCGTTACGGTATAAGTCAATTCTCACGAGATTTCGGAGTTTAAAATGAAAGGTACGATTGTTG
GCGTTGATCTGGCTAAAAATGTAATTCAAGTTTGTGTCTTCACAAATAACAAGGTGCACTCAAATACTGAAATGACACCGAATGAATTTATCGACTGGCT
GGCTAACTTTGCCACCGTAACCATCGTGTTCGAAGCTTGTGGAATGTCTAATTACTGGAAACAAAAAGCAATGACGTTTGGCCATGAGGCTAAGTTAATT
TCAGCAAAGTTAGTCTCAGCTGTCAGGCAAAATCAAAAAACAGACAAAAATGATGCTTTAGCGATTGTTCAGGCGGCACTCTTGCCCGAGGTCAACTTCA
TCACGGGTAAATCAGTCGAGCAGCAGCAACTGCAATCTATTATGAGACTACGAGAGCTGGCTATTAAACAAAAAACGGCGATGACTAACCAGCTCACTTC
ATTATTAGCAGAGTTTAATCTGATGACGTCAACCAAACATGGCGGCTTACGCGGTGTGATTGAATCAACGTTAGAAGACGCTGAAAATGATTTTTCTTCT
GAGTTTCGTAACGCTCTTGCGGCGGCCTGGCAACAGTATTTAGCTGTCGTCACATCTATAGCAACTTATGACCAGTGCTTGGAAAAGTCACTTAACACTC
ATCCTGAGGCTAAAAAACTATTAAAAATTGAAGGGGTGGGTACTCTCAATGCTATTAATCTTTATATCGCATTAGGTTGCGCTGATATTGGTGTTGTTTC
CACAGGAAAAGATGCATCTGCCTGTATTGGATTAACGCCGATTCAATATTCTTCAGGTGGAAAGGCCAAACTGGGGTCCATAGGAAAACACGTTAAGAAT
AGCATTCTCAGAAGCCAGTTAATCACAGGTGCGTTGTCAGCGGTTAGTCAAATGGTCAAAAGAGAACCCAAAACGACGAAGGAGCGCTGGGTTCAGGCTT
TGGTTGAGCGACGGGGTAAGAAATGCGCCGCGGTGGCGTTAGCCAATAAGACGGTCAGAACTGCCTATGCCATGCTTACACAGGGTACAGAATATAAAGC
AGAGTTAATTTCAGCGTAAAAGCGTTCAAACAACAAAAATGCACAATCGAAGATTAAAATCAGCCAGTTAAGGTAGCCCGTATCAAAGAGTCTTGAACTC
GTCGTGTAGAATTATCAACTGGTTCGCGTAAATATCATAGAGCCTGAGTTCGCTACTCAATTGAGAGCTCGTACATAAGTTCGCATTTATTCTTTAAGAG
TGCCTGTTTGTTGTTGACACAGGGGAGTCCACATAAGATACGGCTGCGGGCTTCGATTTCAGGG
GCGTTGATCTGGCTAAAAATGTAATTCAAGTTTGTGTCTTCACAAATAACAAGGTGCACTCAAATACTGAAATGACACCGAATGAATTTATCGACTGGCT
GGCTAACTTTGCCACCGTAACCATCGTGTTCGAAGCTTGTGGAATGTCTAATTACTGGAAACAAAAAGCAATGACGTTTGGCCATGAGGCTAAGTTAATT
TCAGCAAAGTTAGTCTCAGCTGTCAGGCAAAATCAAAAAACAGACAAAAATGATGCTTTAGCGATTGTTCAGGCGGCACTCTTGCCCGAGGTCAACTTCA
TCACGGGTAAATCAGTCGAGCAGCAGCAACTGCAATCTATTATGAGACTACGAGAGCTGGCTATTAAACAAAAAACGGCGATGACTAACCAGCTCACTTC
ATTATTAGCAGAGTTTAATCTGATGACGTCAACCAAACATGGCGGCTTACGCGGTGTGATTGAATCAACGTTAGAAGACGCTGAAAATGATTTTTCTTCT
GAGTTTCGTAACGCTCTTGCGGCGGCCTGGCAACAGTATTTAGCTGTCGTCACATCTATAGCAACTTATGACCAGTGCTTGGAAAAGTCACTTAACACTC
ATCCTGAGGCTAAAAAACTATTAAAAATTGAAGGGGTGGGTACTCTCAATGCTATTAATCTTTATATCGCATTAGGTTGCGCTGATATTGGTGTTGTTTC
CACAGGAAAAGATGCATCTGCCTGTATTGGATTAACGCCGATTCAATATTCTTCAGGTGGAAAGGCCAAACTGGGGTCCATAGGAAAACACGTTAAGAAT
AGCATTCTCAGAAGCCAGTTAATCACAGGTGCGTTGTCAGCGGTTAGTCAAATGGTCAAAAGAGAACCCAAAACGACGAAGGAGCGCTGGGTTCAGGCTT
TGGTTGAGCGACGGGGTAAGAAATGCGCCGCGGTGGCGTTAGCCAATAAGACGGTCAGAACTGCCTATGCCATGCTTACACAGGGTACAGAATATAAAGC
AGAGTTAATTTCAGCGTAAAAGCGTTCAAACAACAAAAATGCACAATCGAAGATTAAAATCAGCCAGTTAAGGTAGCCCGTATCAAAGAGTCTTGAACTC
GTCGTGTAGAATTATCAACTGGTTCGCGTAAATATCATAGAGCCTGAGTTCGCTACTCAATTGAGAGCTCGTACATAAGTTCGCATTTATTCTTTAAGAG
TGCCTGTTTGTTGTTGACACAGGGGAGTCCACATAAGATACGGCTGCGGGCTTCGATTTCAGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1038 bp | 345 aa | 82 | 1119 | + | No |
Chemistry : DEDD
ORF sequence :
MKGTIVGVDLAKNVIQVCVFTNNKVHSNTEMTPNEFIDWLANFATVTIVFEACGMSNYWKQKAMTFGHEAKLISAKLVSAVRQNQKTDKNDALAIVQAAL
LPEVNFITGKSVEQQQLQSIMRLRELAIKQKTAMTNQLTSLLAEFNLMTSTKHGGLRGVIESTLEDAENDFSSEFRNALAAAWQQYLAVVTSIATYDQCL
EKSLNTHPEAKKLLKIEGVGTLNAINLYIALGCADIGVVSTGKDASACIGLTPIQYSSGGKAKLGSIGKHVKNSILRSQLITGALSAVSQMVKREPKTTK
ERWVQALVERRGKKCAAVALANKTVRTAYAMLTQGTEYKAELISA
LPEVNFITGKSVEQQQLQSIMRLRELAIKQKTAMTNQLTSLLAEFNLMTSTKHGGLRGVIESTLEDAENDFSSEFRNALAAAWQQYLAVVTSIATYDQCL
EKSLNTHPEAKKLLKIEGVGTLNAINLYIALGCADIGVVSTGKDASACIGLTPIQYSSGGKAKLGSIGKHVKNSILRSQLITGALSAVSQMVKREPKTTK
ERWVQALVERRGKKCAAVALANKTVRTAYAMLTQGTEYKAELISA
Blast result :
Comments
There are 3 copies of ISSpe4 encoded in the Shewanella pealeana genome.
The transposase encoded by ISSpe4 has 44% identity to that encoded by ISCps1.
The transposase encoded by ISSpe4 has 44% identity to that encoded by ISCps1.
References
1] Romine, M. F. (2008) Direct submission.