ISBj5_B

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s) ISBj14
Accession numberTranspositionOriginHost
NC_004463 ND Bradyrhizobium japonicum
Bradyrhizobium japonicum USDA 110
DNA section
IS Length : 1524 bp

Ends


IR Length : 15/16

IRL : GTCGTCCGTGAAGAAGGACTAAGCCACTGATCGGGAATCTCGATTTGGGC
IRR : GTCGTCCGTTAAGAAGCCGGATTGATCGAGGCTGGCCGGGCGAGCGTGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CCCGTTCACGACGCTGTTCAACCGCTTCAG6

DNA sequence

GTCGTCCGTGAAGAAGGACTAAGCCACTGATCGGGAATCTCGATTTGGGCTAAGGGGCATTTCCAGATTGCAAGGTTTTGATGCTTTGGGCGTCAGAACC
TTGCGATTTGGTTTTCGTGGATTCCCTCGAAGCGGGAAGCATGATTCCTTGTCTGCATCGGAGGGAACGATGCGGCCGAAGAAGCACAAGACGACGGGAT
CGAACGATCTGTTCCGGGCTCGGCTCGACCAGATCATCAATATGAAGCACGAGCTGGTTCTGCTCGCCGGCAAGGTCGATTGGGACTGGATCGACGGCGA
GATCGCGCCGCTCTACAGCGAGAACGGCAGGCCCGGGATCGAGACGCGCTTCATGATCGGTCTGCTGTTGCTCAAGCACATTTACGGGCTGTCCGATGAG
GAGGTGTGCGAGCGCTGGGTCCATGACCCATACTTCCAGTTCTTCACCGGGGAAGAGTTCTTTCAGCACACGTTCCCGCACGAGCGCTCGGACCTGAGCC
ATTGGCGCAAGCGGCTTGGCGACAAGCTGGAGTTGCTGCTGGCCGAGAGCTTGCGGGTAGCGCACGAGGCCGGTGCATTACGCAGCCAGGACCTCAAGCG
GGTTACGGTCGACACCACGGTGCAGCCGAAGGCCATCACCTTTCCGACCGATGCCAAGCTGCTGCATGCGGCCATCAAGGGGCTCAACCGCCTGGCGATC
AGGCACGGCGTCAGGCTGCGGCAATCCTATGCTCGCATCGCCAAGGCCGCCGCGATGATGGCCGGCCGCTACGCCCATGCCAAACAGTTCAGGCGGCATC
AGCGGCAGTTGCGTATCCTGCGTAGCCGGCTGGGCCGGATCATCCGCGACATCCGCCGCAAGATCGAAGGCCAGCCAGCACTGGAGCAGGCGTTCGCCCT
CCCGCTCGGCCGGGCCACGCAGATCCGCTCGCAGCAGCAGCGCCAGCGCGGCTGGAAGCTCTATTCCTTCCATGCCCCGGAAGTGGAGTGCATCGGCAAG
GGCAAGGCCAGCGCGCCTTACGAGTTCGGCGTGAAGGCCTCCATCGTCACCAACAACCGCCGGGCTCCCGGTGGCCTGTTCGTGCTGCACGCCAGCGCAC
TGCCCGACAACCCCTACGACGGTCACACCTTGCGGGACGTCATTGACCGCACCGAGACACTCACCGGCTGTCCGATCGAGCGGGCCTATGTCGACAAGGG
ATACCGCGGCCACGACGCACAAAATCCCCGTCGCGTCTTCATCTCCGGCCAGAAGCGCGGCGTTTTCGGTGTCATCAAGCGCGAGCTGCGCCGCCGCTCC
GCCATCGAGCCCATCATCGGACACCTGAAGGCGGAAGGCCACCTCGGGCGCTGCTACCTCAAAGGCCGCGCCGGCGATGCCGCCAACGTCGTCCTCTCAG
CCGTCGGACACAACTTCCGCCGCATCCTCGCCTGGCTGAGATATCTCTTGTGCCTGTTCCTGGCCCAGCTATGGCGCACGCTCGCCCGGCCAGCCTCGAT
CAATCCGGCTTCTTAACGGACGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa1701516+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRPKKHKTTGSNDLFRARLDQIINMKHELVLLAGKVDWDWIDGEIAPLYSENGRPGIETRFMIGLLLLKHIYGLSDEEVCERWVHDPYFQFFTGEEFFQH
TFPHERSDLSHWRKRLGDKLELLLAESLRVAHEAGALRSQDLKRVTVDTTVQPKAITFPTDAKLLHAAIKGLNRLAIRHGVRLRQSYARIAKAAAMMAGR
YAHAKQFRRHQRQLRILRSRLGRIIRDIRRKIEGQPALEQAFALPLGRATQIRSQQQRQRGWKLYSFHAPEVECIGKGKASAPYEFGVKASIVTNNRRAP
GGLFVLHASALPDNPYDGHTLRDVIDRTETLTGCPIERAYVDKGYRGHDAQNPRRVFISGQKRGVFGVIKRELRRRSAIEPIIGHLKAEGHLGRCYLKGR
AGDAANVVLSAVGHNFRRILAWLRYLLCLFLAQLWRTLARPASINPAS

 

Blast result :
Comments
ISBj5_B is 68% aa similar to ISRm13.
References
1] ISfinder annotation (2008)
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S.(2002) DNA Res. 9 (6), 225-256