ISBj5_B
- Family IS5
- Group IS5
Isoform Synonym(s) ISBj14
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004463 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 110 |
DNA section
IS Length : 1524 bp
Ends
IR Length : 15/16
IRL : GTCGTCCGTGAAGAAGGACTAAGCCACTGATCGGGAATCTCGATTTGGGC
IRR : GTCGTCCGTTAAGAAGCCGGATTGATCGAGGCTGGCCGGGCGAGCGTGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCGTTCACGACGC | TGTTCA | ACCGCTTCAG | 6 |
DNA sequence
GTCGTCCGTGAAGAAGGACTAAGCCACTGATCGGGAATCTCGATTTGGGCTAAGGGGCATTTCCAGATTGCAAGGTTTTGATGCTTTGGGCGTCAGAACC
TTGCGATTTGGTTTTCGTGGATTCCCTCGAAGCGGGAAGCATGATTCCTTGTCTGCATCGGAGGGAACGATGCGGCCGAAGAAGCACAAGACGACGGGAT
CGAACGATCTGTTCCGGGCTCGGCTCGACCAGATCATCAATATGAAGCACGAGCTGGTTCTGCTCGCCGGCAAGGTCGATTGGGACTGGATCGACGGCGA
GATCGCGCCGCTCTACAGCGAGAACGGCAGGCCCGGGATCGAGACGCGCTTCATGATCGGTCTGCTGTTGCTCAAGCACATTTACGGGCTGTCCGATGAG
GAGGTGTGCGAGCGCTGGGTCCATGACCCATACTTCCAGTTCTTCACCGGGGAAGAGTTCTTTCAGCACACGTTCCCGCACGAGCGCTCGGACCTGAGCC
ATTGGCGCAAGCGGCTTGGCGACAAGCTGGAGTTGCTGCTGGCCGAGAGCTTGCGGGTAGCGCACGAGGCCGGTGCATTACGCAGCCAGGACCTCAAGCG
GGTTACGGTCGACACCACGGTGCAGCCGAAGGCCATCACCTTTCCGACCGATGCCAAGCTGCTGCATGCGGCCATCAAGGGGCTCAACCGCCTGGCGATC
AGGCACGGCGTCAGGCTGCGGCAATCCTATGCTCGCATCGCCAAGGCCGCCGCGATGATGGCCGGCCGCTACGCCCATGCCAAACAGTTCAGGCGGCATC
AGCGGCAGTTGCGTATCCTGCGTAGCCGGCTGGGCCGGATCATCCGCGACATCCGCCGCAAGATCGAAGGCCAGCCAGCACTGGAGCAGGCGTTCGCCCT
CCCGCTCGGCCGGGCCACGCAGATCCGCTCGCAGCAGCAGCGCCAGCGCGGCTGGAAGCTCTATTCCTTCCATGCCCCGGAAGTGGAGTGCATCGGCAAG
GGCAAGGCCAGCGCGCCTTACGAGTTCGGCGTGAAGGCCTCCATCGTCACCAACAACCGCCGGGCTCCCGGTGGCCTGTTCGTGCTGCACGCCAGCGCAC
TGCCCGACAACCCCTACGACGGTCACACCTTGCGGGACGTCATTGACCGCACCGAGACACTCACCGGCTGTCCGATCGAGCGGGCCTATGTCGACAAGGG
ATACCGCGGCCACGACGCACAAAATCCCCGTCGCGTCTTCATCTCCGGCCAGAAGCGCGGCGTTTTCGGTGTCATCAAGCGCGAGCTGCGCCGCCGCTCC
GCCATCGAGCCCATCATCGGACACCTGAAGGCGGAAGGCCACCTCGGGCGCTGCTACCTCAAAGGCCGCGCCGGCGATGCCGCCAACGTCGTCCTCTCAG
CCGTCGGACACAACTTCCGCCGCATCCTCGCCTGGCTGAGATATCTCTTGTGCCTGTTCCTGGCCCAGCTATGGCGCACGCTCGCCCGGCCAGCCTCGAT
CAATCCGGCTTCTTAACGGACGAC
TTGCGATTTGGTTTTCGTGGATTCCCTCGAAGCGGGAAGCATGATTCCTTGTCTGCATCGGAGGGAACGATGCGGCCGAAGAAGCACAAGACGACGGGAT
CGAACGATCTGTTCCGGGCTCGGCTCGACCAGATCATCAATATGAAGCACGAGCTGGTTCTGCTCGCCGGCAAGGTCGATTGGGACTGGATCGACGGCGA
GATCGCGCCGCTCTACAGCGAGAACGGCAGGCCCGGGATCGAGACGCGCTTCATGATCGGTCTGCTGTTGCTCAAGCACATTTACGGGCTGTCCGATGAG
GAGGTGTGCGAGCGCTGGGTCCATGACCCATACTTCCAGTTCTTCACCGGGGAAGAGTTCTTTCAGCACACGTTCCCGCACGAGCGCTCGGACCTGAGCC
ATTGGCGCAAGCGGCTTGGCGACAAGCTGGAGTTGCTGCTGGCCGAGAGCTTGCGGGTAGCGCACGAGGCCGGTGCATTACGCAGCCAGGACCTCAAGCG
GGTTACGGTCGACACCACGGTGCAGCCGAAGGCCATCACCTTTCCGACCGATGCCAAGCTGCTGCATGCGGCCATCAAGGGGCTCAACCGCCTGGCGATC
AGGCACGGCGTCAGGCTGCGGCAATCCTATGCTCGCATCGCCAAGGCCGCCGCGATGATGGCCGGCCGCTACGCCCATGCCAAACAGTTCAGGCGGCATC
AGCGGCAGTTGCGTATCCTGCGTAGCCGGCTGGGCCGGATCATCCGCGACATCCGCCGCAAGATCGAAGGCCAGCCAGCACTGGAGCAGGCGTTCGCCCT
CCCGCTCGGCCGGGCCACGCAGATCCGCTCGCAGCAGCAGCGCCAGCGCGGCTGGAAGCTCTATTCCTTCCATGCCCCGGAAGTGGAGTGCATCGGCAAG
GGCAAGGCCAGCGCGCCTTACGAGTTCGGCGTGAAGGCCTCCATCGTCACCAACAACCGCCGGGCTCCCGGTGGCCTGTTCGTGCTGCACGCCAGCGCAC
TGCCCGACAACCCCTACGACGGTCACACCTTGCGGGACGTCATTGACCGCACCGAGACACTCACCGGCTGTCCGATCGAGCGGGCCTATGTCGACAAGGG
ATACCGCGGCCACGACGCACAAAATCCCCGTCGCGTCTTCATCTCCGGCCAGAAGCGCGGCGTTTTCGGTGTCATCAAGCGCGAGCTGCGCCGCCGCTCC
GCCATCGAGCCCATCATCGGACACCTGAAGGCGGAAGGCCACCTCGGGCGCTGCTACCTCAAAGGCCGCGCCGGCGATGCCGCCAACGTCGTCCTCTCAG
CCGTCGGACACAACTTCCGCCGCATCCTCGCCTGGCTGAGATATCTCTTGTGCCTGTTCCTGGCCCAGCTATGGCGCACGCTCGCCCGGCCAGCCTCGAT
CAATCCGGCTTCTTAACGGACGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 170 | 1516 | + | No |
Chemistry : DDE
ORF sequence :
MRPKKHKTTGSNDLFRARLDQIINMKHELVLLAGKVDWDWIDGEIAPLYSENGRPGIETRFMIGLLLLKHIYGLSDEEVCERWVHDPYFQFFTGEEFFQH
TFPHERSDLSHWRKRLGDKLELLLAESLRVAHEAGALRSQDLKRVTVDTTVQPKAITFPTDAKLLHAAIKGLNRLAIRHGVRLRQSYARIAKAAAMMAGR
YAHAKQFRRHQRQLRILRSRLGRIIRDIRRKIEGQPALEQAFALPLGRATQIRSQQQRQRGWKLYSFHAPEVECIGKGKASAPYEFGVKASIVTNNRRAP
GGLFVLHASALPDNPYDGHTLRDVIDRTETLTGCPIERAYVDKGYRGHDAQNPRRVFISGQKRGVFGVIKRELRRRSAIEPIIGHLKAEGHLGRCYLKGR
AGDAANVVLSAVGHNFRRILAWLRYLLCLFLAQLWRTLARPASINPAS
TFPHERSDLSHWRKRLGDKLELLLAESLRVAHEAGALRSQDLKRVTVDTTVQPKAITFPTDAKLLHAAIKGLNRLAIRHGVRLRQSYARIAKAAAMMAGR
YAHAKQFRRHQRQLRILRSRLGRIIRDIRRKIEGQPALEQAFALPLGRATQIRSQQQRQRGWKLYSFHAPEVECIGKGKASAPYEFGVKASIVTNNRRAP
GGLFVLHASALPDNPYDGHTLRDVIDRTETLTGCPIERAYVDKGYRGHDAQNPRRVFISGQKRGVFGVIKRELRRRSAIEPIIGHLKAEGHLGRCYLKGR
AGDAANVVLSAVGHNFRRILAWLRYLLCLFLAQLWRTLARPASINPAS
Blast result :
Comments
ISBj5_B is 68% aa similar to ISRm13.
References
1] ISfinder annotation (2008)
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S.(2002) DNA Res. 9 (6), 225-256
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S.(2002) DNA Res. 9 (6), 225-256