ISDha11
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense |
DNA section
IS Length : 1567 bp
Ends
IR Length : 13/15
IRL : GAATTAGTTTCATAACTTGAACCCATTGATATTTCTACTTTTTTTGACAA
IRR : GAGTTAATTTCATAATGTTAGTCCGAAAATAAAACAGACTAACAGAATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAATACACT | ACAAATTCCGAAA | 0 | |
AATTTAATCTTTTGGC | AAAT | ACATATAAAATTATTT | 4 |
CCGGACTATTTTTAGT | ATAT | ATCATAAAAATTGGTA | 4 |
CCCGATAATTTCATAT | AGTT | CAAATAATCATACCGG | 4 |
AACGAATAAAGTATTT | AACT | ATTAAGGTT ATTCAAC | 4 |
DNA sequence
GAATTAGTTTCATAACTTGAACCCATTGATATTTCTACTTTTTTTGACAACTAAAAAAGGAGTACCTCCCCAACATCTCGAAATTGTAGTCGTCCAAAAC
ACAAACACCGAGAGGTGGGAAAGGAGTACTCCCTGATGTTTAATATTCGCCAAGAACGTCTATTTTCCTTGGAGGAAATTTTAGAAACTTCTCCAAGAGA
TTCATATTCTCTAATTCTTGGGTCTTTGGACATTATTCCTTTACTCAATGCAGTTTCTAAAAAGGCTATCTTTGGAGCCCCAACTCAACTAAACTATTCT
GCTATGATCTACTCATTAATCATTCGAGTAATTGAAAGAATCCCTACAATTAAGGATTTGCGTAAGCGGTTAAAGAACAGCTTAGAGTTTCGATTCGACT
GTGGATTCACTCTTGCTGACTCTGTTCCTAGTGAAGCATCCTATTGCCGGATGATTAAGAAAATCCAAGATTCCTCTGCCTTGGCAAATTCTCAGGATGA
TTTGGTGCTTCAGGCATTCAAAGAAGGGTTTATCGGTCCGAAATGTGCTGTTGCAATCGATGCTACCCATATCGAAGCCAGAGATCGCAAGCCTGAAAAA
AAGAAGGAAAAAACAGTGGTTGAGCAAGCTCCCAAAAAGCGTGGTCGAAAGCCCAAAGCAGAACGCGAGGCTTGGCTCAAAGAACAGGAGGAGCTAGAAA
AGAATCGCCCCATATTTGAAAAGAAGATTGAAGATCAACTTCCCTACAGCTTTACAGAATTAGTACAACACATCCCACTTGATCCTCAATGGGGTATTAA
GAAGAATTCAGAAGGTAAAAACGTGTTCTGGTATGGCTTCAAAGGGCACCTCCTTGTCGATTGTAAGGGCCAATACGTTTTAAGCTCCTTACTCTCTTCG
GGGAATATAAATGACGGAAAAATGGCCATTCCTCTAATTAAAGCTCTGAGTGAAAAGCACCCTTATTTGAACCCCTCCCATATCCTTGCGGATGCAGGAT
ATGACTATGCTCCAATTTACGAGCAAGCTAGAAGTATAGGAGCACAAGCGCTGATTGATTACAATCGACGAAATGAGCAACTTCCAGAGGGCAAAGATAA
ATATTTTCGTCCAATATGCCAGAAGGGTTATTCATACCGCTACGACAGCTATGATCCATGCTATGACACTGTAAAATATACTCAACCCAAGGAATGCAAG
GAGTGTTCACTTAGGGAAAGCAATACCTGTCAAAGGGTGTTTAAGATGAAGGTTTCATCAGATCCTAGAAAATACACTGTACCAGCTAGGGGAAGTGACC
GTTACTTTGAACTTTACAAACAACGAACTGCTGTAGAGCGAGTCAATGCGTATCTCAAGGAGTATTTCCAGCTCAACAATATCCGTCATCGTGGAAAACG
TGCCCAAGTAGATTTTCAGTTTTCAATCTTGGCCTATACCCTATGCAAATTAGCTGTCGATCGCCTAAATAAGTCAACGAGTATGGCCGCTTAGTTTTTT
AAAAAACGGAAATTCCGAAATTCTGTTAGTCTGTTTTATTTTCGGACTAACATTATGAAATTAACTC
ACAAACACCGAGAGGTGGGAAAGGAGTACTCCCTGATGTTTAATATTCGCCAAGAACGTCTATTTTCCTTGGAGGAAATTTTAGAAACTTCTCCAAGAGA
TTCATATTCTCTAATTCTTGGGTCTTTGGACATTATTCCTTTACTCAATGCAGTTTCTAAAAAGGCTATCTTTGGAGCCCCAACTCAACTAAACTATTCT
GCTATGATCTACTCATTAATCATTCGAGTAATTGAAAGAATCCCTACAATTAAGGATTTGCGTAAGCGGTTAAAGAACAGCTTAGAGTTTCGATTCGACT
GTGGATTCACTCTTGCTGACTCTGTTCCTAGTGAAGCATCCTATTGCCGGATGATTAAGAAAATCCAAGATTCCTCTGCCTTGGCAAATTCTCAGGATGA
TTTGGTGCTTCAGGCATTCAAAGAAGGGTTTATCGGTCCGAAATGTGCTGTTGCAATCGATGCTACCCATATCGAAGCCAGAGATCGCAAGCCTGAAAAA
AAGAAGGAAAAAACAGTGGTTGAGCAAGCTCCCAAAAAGCGTGGTCGAAAGCCCAAAGCAGAACGCGAGGCTTGGCTCAAAGAACAGGAGGAGCTAGAAA
AGAATCGCCCCATATTTGAAAAGAAGATTGAAGATCAACTTCCCTACAGCTTTACAGAATTAGTACAACACATCCCACTTGATCCTCAATGGGGTATTAA
GAAGAATTCAGAAGGTAAAAACGTGTTCTGGTATGGCTTCAAAGGGCACCTCCTTGTCGATTGTAAGGGCCAATACGTTTTAAGCTCCTTACTCTCTTCG
GGGAATATAAATGACGGAAAAATGGCCATTCCTCTAATTAAAGCTCTGAGTGAAAAGCACCCTTATTTGAACCCCTCCCATATCCTTGCGGATGCAGGAT
ATGACTATGCTCCAATTTACGAGCAAGCTAGAAGTATAGGAGCACAAGCGCTGATTGATTACAATCGACGAAATGAGCAACTTCCAGAGGGCAAAGATAA
ATATTTTCGTCCAATATGCCAGAAGGGTTATTCATACCGCTACGACAGCTATGATCCATGCTATGACACTGTAAAATATACTCAACCCAAGGAATGCAAG
GAGTGTTCACTTAGGGAAAGCAATACCTGTCAAAGGGTGTTTAAGATGAAGGTTTCATCAGATCCTAGAAAATACACTGTACCAGCTAGGGGAAGTGACC
GTTACTTTGAACTTTACAAACAACGAACTGCTGTAGAGCGAGTCAATGCGTATCTCAAGGAGTATTTCCAGCTCAACAATATCCGTCATCGTGGAAAACG
TGCCCAAGTAGATTTTCAGTTTTCAATCTTGGCCTATACCCTATGCAAATTAGCTGTCGATCGCCTAAATAAGTCAACGAGTATGGCCGCTTAGTTTTTT
AAAAAACGGAAATTCCGAAATTCTGTTAGTCTGTTTTATTTTCGGACTAACATTATGAAATTAACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 136 | 1494 | + | No |
Chemistry : DDE
ORF sequence :
MFNIRQERLFSLEEILETSPRDSYSLILGSLDIIPLLNAVSKKAIFGAPTQLNYSAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSE
ASYCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKTVVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIED
QLPYSFTELVQHIPLDPQWGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHPYLNPSHILADAGYDYAPIYEQARS
IGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSYRYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFELYKQRTAV
ERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSMAA
ASYCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKTVVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIED
QLPYSFTELVQHIPLDPQWGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHPYLNPSHILADAGYDYAPIYEQARS
IGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSYRYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFELYKQRTAV
ERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSMAA
Blast result :
Comments
ISDha11 is 94% aa similar to ISDha8.
References
1] Miriam Land (2008) Direct submission.