ISDha11

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011830 ND Desulfitobacterium hafniense
Desulfitobacterium hafniense
DNA section
IS Length : 1567 bp

Ends


IR Length : 13/15

IRL : GAATTAGTTTCATAACTTGAACCCATTGATATTTCTACTTTTTTTGACAA
IRR : GAGTTAATTTCATAATGTTAGTCCGAAAATAAAACAGACTAACAGAATTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTAATACACTACAAATTCCGAAA0
AATTTAATCTTTTGGCAAATACATATAAAATTATTT4
CCGGACTATTTTTAGTATATATCATAAAAATTGGTA4
CCCGATAATTTCATATAGTTCAAATAATCATACCGG4
AACGAATAAAGTATTTAACTATTAAGGTT ATTCAAC4

DNA sequence

GAATTAGTTTCATAACTTGAACCCATTGATATTTCTACTTTTTTTGACAACTAAAAAAGGAGTACCTCCCCAACATCTCGAAATTGTAGTCGTCCAAAAC
ACAAACACCGAGAGGTGGGAAAGGAGTACTCCCTGATGTTTAATATTCGCCAAGAACGTCTATTTTCCTTGGAGGAAATTTTAGAAACTTCTCCAAGAGA
TTCATATTCTCTAATTCTTGGGTCTTTGGACATTATTCCTTTACTCAATGCAGTTTCTAAAAAGGCTATCTTTGGAGCCCCAACTCAACTAAACTATTCT
GCTATGATCTACTCATTAATCATTCGAGTAATTGAAAGAATCCCTACAATTAAGGATTTGCGTAAGCGGTTAAAGAACAGCTTAGAGTTTCGATTCGACT
GTGGATTCACTCTTGCTGACTCTGTTCCTAGTGAAGCATCCTATTGCCGGATGATTAAGAAAATCCAAGATTCCTCTGCCTTGGCAAATTCTCAGGATGA
TTTGGTGCTTCAGGCATTCAAAGAAGGGTTTATCGGTCCGAAATGTGCTGTTGCAATCGATGCTACCCATATCGAAGCCAGAGATCGCAAGCCTGAAAAA
AAGAAGGAAAAAACAGTGGTTGAGCAAGCTCCCAAAAAGCGTGGTCGAAAGCCCAAAGCAGAACGCGAGGCTTGGCTCAAAGAACAGGAGGAGCTAGAAA
AGAATCGCCCCATATTTGAAAAGAAGATTGAAGATCAACTTCCCTACAGCTTTACAGAATTAGTACAACACATCCCACTTGATCCTCAATGGGGTATTAA
GAAGAATTCAGAAGGTAAAAACGTGTTCTGGTATGGCTTCAAAGGGCACCTCCTTGTCGATTGTAAGGGCCAATACGTTTTAAGCTCCTTACTCTCTTCG
GGGAATATAAATGACGGAAAAATGGCCATTCCTCTAATTAAAGCTCTGAGTGAAAAGCACCCTTATTTGAACCCCTCCCATATCCTTGCGGATGCAGGAT
ATGACTATGCTCCAATTTACGAGCAAGCTAGAAGTATAGGAGCACAAGCGCTGATTGATTACAATCGACGAAATGAGCAACTTCCAGAGGGCAAAGATAA
ATATTTTCGTCCAATATGCCAGAAGGGTTATTCATACCGCTACGACAGCTATGATCCATGCTATGACACTGTAAAATATACTCAACCCAAGGAATGCAAG
GAGTGTTCACTTAGGGAAAGCAATACCTGTCAAAGGGTGTTTAAGATGAAGGTTTCATCAGATCCTAGAAAATACACTGTACCAGCTAGGGGAAGTGACC
GTTACTTTGAACTTTACAAACAACGAACTGCTGTAGAGCGAGTCAATGCGTATCTCAAGGAGTATTTCCAGCTCAACAATATCCGTCATCGTGGAAAACG
TGCCCAAGTAGATTTTCAGTTTTCAATCTTGGCCTATACCCTATGCAAATTAGCTGTCGATCGCCTAAATAAGTCAACGAGTATGGCCGCTTAGTTTTTT
AAAAAACGGAAATTCCGAAATTCTGTTAGTCTGTTTTATTTTCGGACTAACATTATGAAATTAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa1361494+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFNIRQERLFSLEEILETSPRDSYSLILGSLDIIPLLNAVSKKAIFGAPTQLNYSAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSE
ASYCRMIKKIQDSSALANSQDDLVLQAFKEGFIGPKCAVAIDATHIEARDRKPEKKKEKTVVEQAPKKRGRKPKAEREAWLKEQEELEKNRPIFEKKIED
QLPYSFTELVQHIPLDPQWGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLIKALSEKHPYLNPSHILADAGYDYAPIYEQARS
IGAQALIDYNRRNEQLPEGKDKYFRPICQKGYSYRYDSYDPCYDTVKYTQPKECKECSLRESNTCQRVFKMKVSSDPRKYTVPARGSDRYFELYKQRTAV
ERVNAYLKEYFQLNNIRHRGKRAQVDFQFSILAYTLCKLAVDRLNKSTSMAA

 

Blast result :
Comments
ISDha11 is 94% aa similar to ISDha8.
References
1] Miriam Land (2008) Direct submission.