ISDha12
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 Desulfitobacterium hafniense Y51 |
DNA section
IS Length : 2022 bp
Ends
Left end : CCTCCTCGTATAATTGATTTAGTTCCTGCCCCACGAGTCCCAAAAACTAATGGAACGTGGGGTATTTAAATGACCATAGAAAACTGGAAATTCAGTAGAT
Right end : TTGGGAATGAGATGGTTTCTTGTTGCCTTTTTTGCCCACTGATTATTAGCTAACTGAAAATTTGACTCGCTTAGAGTCTTGACATATTACCGAAGGACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTGCCTTT | TATATTTGCA | 0 | |
CAATAATATC | AATATCAATT | 0 | |
CATAAAAGGA | AAATTTCACA | 0 | |
CATAGGGAAA | TTAACTTTTT | 0 | |
TTCATAGATA | AAAGTTATTC | 0 | |
CATGGTTCAT | AACGATTGAG | 0 | |
CATTATATTT | ATCATAAGGG | 0 | |
CATACCGATT | ATATAGATAG | 0 | |
CATTGCCATT | ATCATGAGTA | 0 | |
CATCTTAGGT | ATTTTAAGTG | 0 | |
CATATTTATT | CACATTATCA | 0 | |
CATTGAATTT | TATAATCAGA | 0 | |
TTTATGTTAT | AACTTAGGTC | 0 | |
CATGGGAATA | ATATCGGCAG | 0 | |
CATTTATTAC | AATTAAAATG | 0 | |
CACAATTTTT | ATTAAAAACG | 0 |
DNA sequence
CCTCCTCGTATAATTGATTTAGTTCCTGCCCCACGAGTCCCAAAAACTAATGGAACGTGGGGTATTTAAATGACCATAGAAAACTGGAAATTCAGTAGAT
ATGGTCAACCGCAACAAGATGCACACAGGATAACGCATACCCCATGCAGCCGTCGTGCCTGTGGGCAGTGTGGACAAGTCAACCCCAAGGCATACTTCAA
ATTCGACTTGTCCAAAGCCTGTTGGGAAAGCTCTTTTAGGACAGACCCCAAAGGGCTTTTCCACAGGCTGGCACTGTCCACAGGCTCAGGATGAGGAATA
CCTGAGATTCCTCAGATCGTTCTTTGACAACAAAAAAGTATTTAAGTTTGTTGGGATTTCAAGCAAAATGGTACCGTGAGGTTCGTTCTGGCAAAGCCTT
TTCCTCCTTGAGGCTCTGACCTCTTTTTAAGTCTGACTGCCAGCCCACAATTTGAACTTTTAACTCGAAGGTTGCACAGCTTAAAGGGAACTCCTCCGAT
AGTAGCAGATCGGTTGGATCCAAGGTCTTTTTAGGACAAGTGCTGATTCGGCGAGGTTGTTGACCTGTTGTGGTGCCTGGTCCCAACGTTAATCTTACAA
ATTGTTTGGCTCAGAAAGTGAGGTGATTTTAATTGAGTTTATTTGTCGGTATTGATGTGAGTTCCAGTGATTTTAAAGTGCGAATCTTAGATGAGCGTGG
TAATGAACCGGTTAAAAGGCTACGGGCTTTGAATGATCAGCCTGGTTGTGAGCAAGTTGCCCGATATCTCTTTGACGCCTGTGCTCAAGTGAATGTGGAC
CGGCTGGTTATTGGTTTAGAGGCCACTTCCGTATACAGTTGGCCGTTACAAATGTTCTTAGCGGAAGACCATTCTTTAGCCCCTTTGCAGCCCCAAATTT
ATTCCTTTAACCCCAAGGTCGTTGCTAATTTCAAGAAGGCTTATGTGGACCTTCCGAAAAACGATTGGATTGATGCCTGGGTCATTGCCGAACGTCTACG
CTTCGGTCGGCTCCCAGAGGGCTCTCAGGTCGATTTCCGCTACTTACCCTTACAGCGCCTCACTCGCTTTCGGTGTCATTTGATTGAGATGATTTCCAGA
GAGAAGAATTATTTTCTCACGAACTTGTTCTTGAAGTTTAGCACGCTTGCCCAAGGTGCGGTTTTTAGTAACACTTTCGGCGCTACTTCTGAATCCTTGA
CACTTGAGTTTTTTTCTCCAGAAGAGGTTGCGGCTCGACCGCTTGATGAACTGATTGATTTCCTCATGGAGAAAGGAAAACGTCATTTCGAGGATCCGGA
AACCAAAGCCAGAGAGTTGAAGGAAGCTGCCCGCAAGGCCCATCGACTGCGTGGAAGCCTATTGCAACCCATTAACCTTATCCTGGCCACGAGCATTGAA
ACCATCCACACCTTGGAGAAGCAGGTAAAGAAAATCGATAAGGCAATCGAAGCAGAAATCAGGCATTTCCCGAATACGCTCATTACCATTCCCGGTATTG
GCCCTGTGCTTTCAGCTGGTATTATTGCTGAGATCGGAGACATCCGTCGTTTTCCGAATGAAGGAGCCTTAGCAAAGTTTATTGGGTTAACCTGGCGTAC
CCACCAGTCAGGTGATTTTACAGCCGATGACACACCCTTAACCCGAACTGGCAACACCTACTTGCGCAGTTATATCATCCAGGCTGCTAACTTAGTACGC
CAAAAGGAACCAGAGTACAAGGTCTTCTACCAACGTAAATTTTCGGAAAGTAAGACTCATCATCATCGCCGTGCTCTCGTGCTTACTGCACGCAAACTCG
TCCGTATGGTTGATGCTCTGCTACGCAGCAACCAAATCTATAGGCCACATGGCAATAGGGGGAATGCAAACCAAGCATGAATTGCGCTAACCGATACTCC
ATTTTTGTAACTTTTTCCCACGATAGTTTGGGAATGAGATGGTTTCTTGTTGCCTTTTTTGCCCACTGATTATTAGCTAACTGAAAATTTGACTCGCTTA
GAGTCTTGACATATTACCGAAGGACTT
ATGGTCAACCGCAACAAGATGCACACAGGATAACGCATACCCCATGCAGCCGTCGTGCCTGTGGGCAGTGTGGACAAGTCAACCCCAAGGCATACTTCAA
ATTCGACTTGTCCAAAGCCTGTTGGGAAAGCTCTTTTAGGACAGACCCCAAAGGGCTTTTCCACAGGCTGGCACTGTCCACAGGCTCAGGATGAGGAATA
CCTGAGATTCCTCAGATCGTTCTTTGACAACAAAAAAGTATTTAAGTTTGTTGGGATTTCAAGCAAAATGGTACCGTGAGGTTCGTTCTGGCAAAGCCTT
TTCCTCCTTGAGGCTCTGACCTCTTTTTAAGTCTGACTGCCAGCCCACAATTTGAACTTTTAACTCGAAGGTTGCACAGCTTAAAGGGAACTCCTCCGAT
AGTAGCAGATCGGTTGGATCCAAGGTCTTTTTAGGACAAGTGCTGATTCGGCGAGGTTGTTGACCTGTTGTGGTGCCTGGTCCCAACGTTAATCTTACAA
ATTGTTTGGCTCAGAAAGTGAGGTGATTTTAATTGAGTTTATTTGTCGGTATTGATGTGAGTTCCAGTGATTTTAAAGTGCGAATCTTAGATGAGCGTGG
TAATGAACCGGTTAAAAGGCTACGGGCTTTGAATGATCAGCCTGGTTGTGAGCAAGTTGCCCGATATCTCTTTGACGCCTGTGCTCAAGTGAATGTGGAC
CGGCTGGTTATTGGTTTAGAGGCCACTTCCGTATACAGTTGGCCGTTACAAATGTTCTTAGCGGAAGACCATTCTTTAGCCCCTTTGCAGCCCCAAATTT
ATTCCTTTAACCCCAAGGTCGTTGCTAATTTCAAGAAGGCTTATGTGGACCTTCCGAAAAACGATTGGATTGATGCCTGGGTCATTGCCGAACGTCTACG
CTTCGGTCGGCTCCCAGAGGGCTCTCAGGTCGATTTCCGCTACTTACCCTTACAGCGCCTCACTCGCTTTCGGTGTCATTTGATTGAGATGATTTCCAGA
GAGAAGAATTATTTTCTCACGAACTTGTTCTTGAAGTTTAGCACGCTTGCCCAAGGTGCGGTTTTTAGTAACACTTTCGGCGCTACTTCTGAATCCTTGA
CACTTGAGTTTTTTTCTCCAGAAGAGGTTGCGGCTCGACCGCTTGATGAACTGATTGATTTCCTCATGGAGAAAGGAAAACGTCATTTCGAGGATCCGGA
AACCAAAGCCAGAGAGTTGAAGGAAGCTGCCCGCAAGGCCCATCGACTGCGTGGAAGCCTATTGCAACCCATTAACCTTATCCTGGCCACGAGCATTGAA
ACCATCCACACCTTGGAGAAGCAGGTAAAGAAAATCGATAAGGCAATCGAAGCAGAAATCAGGCATTTCCCGAATACGCTCATTACCATTCCCGGTATTG
GCCCTGTGCTTTCAGCTGGTATTATTGCTGAGATCGGAGACATCCGTCGTTTTCCGAATGAAGGAGCCTTAGCAAAGTTTATTGGGTTAACCTGGCGTAC
CCACCAGTCAGGTGATTTTACAGCCGATGACACACCCTTAACCCGAACTGGCAACACCTACTTGCGCAGTTATATCATCCAGGCTGCTAACTTAGTACGC
CAAAAGGAACCAGAGTACAAGGTCTTCTACCAACGTAAATTTTCGGAAAGTAAGACTCATCATCATCGCCGTGCTCTCGTGCTTACTGCACGCAAACTCG
TCCGTATGGTTGATGCTCTGCTACGCAGCAACCAAATCTATAGGCCACATGGCAATAGGGGGAATGCAAACCAAGCATGAATTGCGCTAACCGATACTCC
ATTTTTGTAACTTTTTCCCACGATAGTTTGGGAATGAGATGGTTTCTTGTTGCCTTTTTTGCCCACTGATTATTAGCTAACTGAAAATTTGACTCGCTTA
GAGTCTTGACATATTACCGAAGGACTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 633 | 1880 | + | No |
Chemistry : DEDD
ORF sequence :
MSLFVGIDVSSSDFKVRILDERGNEPVKRLRALNDQPGCEQVARYLFDACAQVNVDRLVIGLEATSVYSWPLQMFLAEDHSLAPLQPQIYSFNPKVVANF
KKAYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNYFLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVA
ARPLDELIDFLMEKGKRHFEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEIRHFPNTLITIPGIGPVLSAGIIAE
IGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDTPLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRMVDALLRSN
QIYRPHGNRGNANQA
KKAYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNYFLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVA
ARPLDELIDFLMEKGKRHFEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEIRHFPNTLITIPGIGPVLSAGIIAE
IGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDTPLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRMVDALLRSN
QIYRPHGNRGNANQA
Blast result :
Comments
ISDha12 is 64% aa similar to ISChy1.
References
1] Miriam Land (2008) Direct submission.
2] Maillard Julien (2009) Direct submission.
2] Maillard Julien (2009) Direct submission.