ISDha12

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011830 ND Desulfitobacterium hafniense
Desulfitobacterium hafniense DCB-2
Desulfitobacterium hafniense Y51
DNA section
IS Length : 2022 bp

Ends


Left end : CCTCCTCGTATAATTGATTTAGTTCCTGCCCCACGAGTCCCAAAAACTAATGGAACGTGGGGTATTTAAATGACCATAGAAAACTGGAAATTCAGTAGAT
Right end : TTGGGAATGAGATGGTTTCTTGTTGCCTTTTTTGCCCACTGATTATTAGCTAACTGAAAATTTGACTCGCTTAGAGTCTTGACATATTACCGAAGGACTT

Insertion site


Left flankDirect repeatRight flankDR Length
CATTGCCTTTTATATTTGCA0
CAATAATATCAATATCAATT0
CATAAAAGGAAAATTTCACA0
CATAGGGAAATTAACTTTTT0
TTCATAGATAAAAGTTATTC0
CATGGTTCATAACGATTGAG0
CATTATATTTATCATAAGGG0
CATACCGATTATATAGATAG0
CATTGCCATTATCATGAGTA0
CATCTTAGGTATTTTAAGTG0
CATATTTATTCACATTATCA0
CATTGAATTTTATAATCAGA0
TTTATGTTATAACTTAGGTC0
CATGGGAATAATATCGGCAG0
CATTTATTACAATTAAAATG0
CACAATTTTTATTAAAAACG0

DNA sequence

CCTCCTCGTATAATTGATTTAGTTCCTGCCCCACGAGTCCCAAAAACTAATGGAACGTGGGGTATTTAAATGACCATAGAAAACTGGAAATTCAGTAGAT
ATGGTCAACCGCAACAAGATGCACACAGGATAACGCATACCCCATGCAGCCGTCGTGCCTGTGGGCAGTGTGGACAAGTCAACCCCAAGGCATACTTCAA
ATTCGACTTGTCCAAAGCCTGTTGGGAAAGCTCTTTTAGGACAGACCCCAAAGGGCTTTTCCACAGGCTGGCACTGTCCACAGGCTCAGGATGAGGAATA
CCTGAGATTCCTCAGATCGTTCTTTGACAACAAAAAAGTATTTAAGTTTGTTGGGATTTCAAGCAAAATGGTACCGTGAGGTTCGTTCTGGCAAAGCCTT
TTCCTCCTTGAGGCTCTGACCTCTTTTTAAGTCTGACTGCCAGCCCACAATTTGAACTTTTAACTCGAAGGTTGCACAGCTTAAAGGGAACTCCTCCGAT
AGTAGCAGATCGGTTGGATCCAAGGTCTTTTTAGGACAAGTGCTGATTCGGCGAGGTTGTTGACCTGTTGTGGTGCCTGGTCCCAACGTTAATCTTACAA
ATTGTTTGGCTCAGAAAGTGAGGTGATTTTAATTGAGTTTATTTGTCGGTATTGATGTGAGTTCCAGTGATTTTAAAGTGCGAATCTTAGATGAGCGTGG
TAATGAACCGGTTAAAAGGCTACGGGCTTTGAATGATCAGCCTGGTTGTGAGCAAGTTGCCCGATATCTCTTTGACGCCTGTGCTCAAGTGAATGTGGAC
CGGCTGGTTATTGGTTTAGAGGCCACTTCCGTATACAGTTGGCCGTTACAAATGTTCTTAGCGGAAGACCATTCTTTAGCCCCTTTGCAGCCCCAAATTT
ATTCCTTTAACCCCAAGGTCGTTGCTAATTTCAAGAAGGCTTATGTGGACCTTCCGAAAAACGATTGGATTGATGCCTGGGTCATTGCCGAACGTCTACG
CTTCGGTCGGCTCCCAGAGGGCTCTCAGGTCGATTTCCGCTACTTACCCTTACAGCGCCTCACTCGCTTTCGGTGTCATTTGATTGAGATGATTTCCAGA
GAGAAGAATTATTTTCTCACGAACTTGTTCTTGAAGTTTAGCACGCTTGCCCAAGGTGCGGTTTTTAGTAACACTTTCGGCGCTACTTCTGAATCCTTGA
CACTTGAGTTTTTTTCTCCAGAAGAGGTTGCGGCTCGACCGCTTGATGAACTGATTGATTTCCTCATGGAGAAAGGAAAACGTCATTTCGAGGATCCGGA
AACCAAAGCCAGAGAGTTGAAGGAAGCTGCCCGCAAGGCCCATCGACTGCGTGGAAGCCTATTGCAACCCATTAACCTTATCCTGGCCACGAGCATTGAA
ACCATCCACACCTTGGAGAAGCAGGTAAAGAAAATCGATAAGGCAATCGAAGCAGAAATCAGGCATTTCCCGAATACGCTCATTACCATTCCCGGTATTG
GCCCTGTGCTTTCAGCTGGTATTATTGCTGAGATCGGAGACATCCGTCGTTTTCCGAATGAAGGAGCCTTAGCAAAGTTTATTGGGTTAACCTGGCGTAC
CCACCAGTCAGGTGATTTTACAGCCGATGACACACCCTTAACCCGAACTGGCAACACCTACTTGCGCAGTTATATCATCCAGGCTGCTAACTTAGTACGC
CAAAAGGAACCAGAGTACAAGGTCTTCTACCAACGTAAATTTTCGGAAAGTAAGACTCATCATCATCGCCGTGCTCTCGTGCTTACTGCACGCAAACTCG
TCCGTATGGTTGATGCTCTGCTACGCAGCAACCAAATCTATAGGCCACATGGCAATAGGGGGAATGCAAACCAAGCATGAATTGCGCTAACCGATACTCC
ATTTTTGTAACTTTTTCCCACGATAGTTTGGGAATGAGATGGTTTCTTGTTGCCTTTTTTGCCCACTGATTATTAGCTAACTGAAAATTTGACTCGCTTA
GAGTCTTGACATATTACCGAAGGACTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa6331880+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSLFVGIDVSSSDFKVRILDERGNEPVKRLRALNDQPGCEQVARYLFDACAQVNVDRLVIGLEATSVYSWPLQMFLAEDHSLAPLQPQIYSFNPKVVANF
KKAYVDLPKNDWIDAWVIAERLRFGRLPEGSQVDFRYLPLQRLTRFRCHLIEMISREKNYFLTNLFLKFSTLAQGAVFSNTFGATSESLTLEFFSPEEVA
ARPLDELIDFLMEKGKRHFEDPETKARELKEAARKAHRLRGSLLQPINLILATSIETIHTLEKQVKKIDKAIEAEIRHFPNTLITIPGIGPVLSAGIIAE
IGDIRRFPNEGALAKFIGLTWRTHQSGDFTADDTPLTRTGNTYLRSYIIQAANLVRQKEPEYKVFYQRKFSESKTHHHRRALVLTARKLVRMVDALLRSN
QIYRPHGNRGNANQA

 

Blast result :
Comments
ISDha12 is 64% aa similar to ISChy1.
References
1] Miriam Land (2008) Direct submission.
2] Maillard Julien (2009) Direct submission.