ISDssp1
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR695867 | ND | Desulfobacterium sp. | Desulfobacterium sp. |
DNA section
IS Length : 1305 bp
Ends
IR Length : 25/26
IRL : GGAGTTGTCACAAAATAACCTTTACATTTAAAACGTACATGCTATACTGC
IRR : GGAGTTGTCACAAAATAACGTTTACAATTTATCTGTTGATCGATATGGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTGAAAGC | TAA | GATGGAGACC | 3 |
AAAACATTAA | TTACGATTGA | 0 | |
ATAGCAGCTC | TTA | TTAATTATCG | 3 |
CCAACAATTA | TAAGGTTGTT | 0 | |
GAGGTACATA | TTAGTAATGA | 0 | |
TTTCCGTTAA | TTATTCAGAA | 0 | |
TGTTATGTAA | TTAGATGGGA | 0 | |
ATGTCAGTAA | TTAGATAATG | 0 | |
GATTGACCGC | TTA | ATCCAAAGTG | 3 |
DNA sequence
GGAGTTGTCACAAAATAACCTTTACATTTAAAACGTACATGCTATACTGCATGCATGGAAATAAGGTTGATAAAAAAACGCTTCGAAATGCTTGCGCCAA
TACTTGACGAGAAAACACTCAGACTTTTTGTCGCTACGGAAGCATTGGCCCTTGGACGTGGAGGAATATCTCTGGTTTCCAAAGCTACTGGAATTTCCAG
ACCAACAATAGCAAACGGATGCAAAGAGATTCTTAAAGCAGAAAACTTTGAAATTTCCGGCGCTTCTTCCGGACGAATCCGTAAGCATGGCGGAGGACGT
AAGCGTACCGTATATAACGATTCGACCCTTTGCAGTGATCTTGAAAGTTTGATAGAACCAGAAACAGCAGGAGACCCAGAGTCGCCGCTTCGATGGACTT
GCAAAAGCGTTCGGAACCTTGCTCAAGAATTGAAAAACATGGGGCATAACACAAGTCATCGAATGGTGGCTGAACTGCTTCATGAAATGGAATACAGCCT
TCAGGCAAACAGAAAGATTCTTGAAGGAGATTCCCACCCGGACCGTGATGAACAATTTGAGTTTATCCACCAGAAAGTTACAGATTTTCAATCGCGTAGC
CAACCCGTCATTTCTGTGGATACCAAGAAGAAAGAACTTGTTGGAGATTTCAGAAACAACGGCAGTGAACTTCACCCGAAGGGAAACCCCGAAAAAGTAC
GAGTTCATGATTTTATGATTCCAAGCCTTGGCAAGGTGGCCCCATATGGTGTTTATGATCAAACCCAAAACAGTGGATGGGTCAATATCGGCACCGATCA
CGACACGGCCGCTTTTGCTGTTGAAAGCATTCGACGATGGTGGAATATCATGGGTAACGAAGTACATCCAAAAGCTCATCAATTACTGATTACAGCTGAC
GGCGGCGGTAGTAATGGATCCAGAATAAGGCTGTGGAAAACGGAGCTGCAAAAGTTTTCTAATGAAACTAACCTCGAAGTATCTGTATGCCATTTTCCAC
CGGGTACAAGCAAATGGAACAAAATTGAACATAGACTTTTTTCCTATATCAGCCAAAACTGGAGAGGAAAACCACTTGTCAGCCATGAAGTGATCATAAA
TCTTATTGCCTCTACAACAACACGAAAAGGATTAACAGTAAAATGTCAACTTGACACCAATAAATATCCGAAAGGTATTAAAATATCAGATAAGTATCTT
CGCCGAGTAAATATCAGTCGTAATGAATTCCATGGAGATTGGAATTATACAATAATGCCATATCGATCAACAGATAAATTGTAAACGTTATTTTGTGACA
ACTCC
TACTTGACGAGAAAACACTCAGACTTTTTGTCGCTACGGAAGCATTGGCCCTTGGACGTGGAGGAATATCTCTGGTTTCCAAAGCTACTGGAATTTCCAG
ACCAACAATAGCAAACGGATGCAAAGAGATTCTTAAAGCAGAAAACTTTGAAATTTCCGGCGCTTCTTCCGGACGAATCCGTAAGCATGGCGGAGGACGT
AAGCGTACCGTATATAACGATTCGACCCTTTGCAGTGATCTTGAAAGTTTGATAGAACCAGAAACAGCAGGAGACCCAGAGTCGCCGCTTCGATGGACTT
GCAAAAGCGTTCGGAACCTTGCTCAAGAATTGAAAAACATGGGGCATAACACAAGTCATCGAATGGTGGCTGAACTGCTTCATGAAATGGAATACAGCCT
TCAGGCAAACAGAAAGATTCTTGAAGGAGATTCCCACCCGGACCGTGATGAACAATTTGAGTTTATCCACCAGAAAGTTACAGATTTTCAATCGCGTAGC
CAACCCGTCATTTCTGTGGATACCAAGAAGAAAGAACTTGTTGGAGATTTCAGAAACAACGGCAGTGAACTTCACCCGAAGGGAAACCCCGAAAAAGTAC
GAGTTCATGATTTTATGATTCCAAGCCTTGGCAAGGTGGCCCCATATGGTGTTTATGATCAAACCCAAAACAGTGGATGGGTCAATATCGGCACCGATCA
CGACACGGCCGCTTTTGCTGTTGAAAGCATTCGACGATGGTGGAATATCATGGGTAACGAAGTACATCCAAAAGCTCATCAATTACTGATTACAGCTGAC
GGCGGCGGTAGTAATGGATCCAGAATAAGGCTGTGGAAAACGGAGCTGCAAAAGTTTTCTAATGAAACTAACCTCGAAGTATCTGTATGCCATTTTCCAC
CGGGTACAAGCAAATGGAACAAAATTGAACATAGACTTTTTTCCTATATCAGCCAAAACTGGAGAGGAAAACCACTTGTCAGCCATGAAGTGATCATAAA
TCTTATTGCCTCTACAACAACACGAAAAGGATTAACAGTAAAATGTCAACTTGACACCAATAAATATCCGAAAGGTATTAAAATATCAGATAAGTATCTT
CGCCGAGTAAATATCAGTCGTAATGAATTCCATGGAGATTGGAATTATACAATAATGCCATATCGATCAACAGATAAATTGTAAACGTTATTTTGTGACA
ACTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 55 | 1284 | + | No |
Chemistry : Unknow
ORF sequence :
MEIRLIKKRFEMLAPILDEKTLRLFVATEALALGRGGISLVSKATGISRPTIANGCKEILKAENFEISGASSGRIRKHGGGRKRTVYNDSTLCSDLESLI
EPETAGDPESPLRWTCKSVRNLAQELKNMGHNTSHRMVAELLHEMEYSLQANRKILEGDSHPDRDEQFEFIHQKVTDFQSRSQPVISVDTKKKELVGDFR
NNGSELHPKGNPEKVRVHDFMIPSLGKVAPYGVYDQTQNSGWVNIGTDHDTAAFAVESIRRWWNIMGNEVHPKAHQLLITADGGGSNGSRIRLWKTELQK
FSNETNLEVSVCHFPPGTSKWNKIEHRLFSYISQNWRGKPLVSHEVIINLIASTTTRKGLTVKCQLDTNKYPKGIKISDKYLRRVNISRNEFHGDWNYTI
MPYRSTDKL
EPETAGDPESPLRWTCKSVRNLAQELKNMGHNTSHRMVAELLHEMEYSLQANRKILEGDSHPDRDEQFEFIHQKVTDFQSRSQPVISVDTKKKELVGDFR
NNGSELHPKGNPEKVRVHDFMIPSLGKVAPYGVYDQTQNSGWVNIGTDHDTAAFAVESIRRWWNIMGNEVHPKAHQLLITADGGGSNGSRIRLWKTELQK
FSNETNLEVSVCHFPPGTSKWNKIEHRLFSYISQNWRGKPLVSHEVIINLIASTTTRKGLTVKCQLDTNKYPKGIKISDKYLRRVNISRNEFHGDWNYTI
MPYRSTDKL
Blast result :
Comments
ISDssp1 is 76% aa similar to ISArch20.
This IS is found in several clones of Uncultured Desulfobacterium sp.
This IS is found in several clones of Uncultured Desulfobacterium sp.
References
1] ISfinder submission (2012)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137