ISDssp1

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR695867 ND Desulfobacterium sp.
Desulfobacterium sp.
DNA section
IS Length : 1305 bp

Ends


IR Length : 25/26

IRL : GGAGTTGTCACAAAATAACCTTTACATTTAAAACGTACATGCTATACTGC
IRR : GGAGTTGTCACAAAATAACGTTTACAATTTATCTGTTGATCGATATGGCA

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTGAAAGCTAAGATGGAGACC3
AAAACATTAATTACGATTGA0
ATAGCAGCTCTTATTAATTATCG3
CCAACAATTATAAGGTTGTT0
GAGGTACATATTAGTAATGA0
TTTCCGTTAATTATTCAGAA0
TGTTATGTAATTAGATGGGA0
ATGTCAGTAATTAGATAATG0
GATTGACCGCTTAATCCAAAGTG3

DNA sequence

GGAGTTGTCACAAAATAACCTTTACATTTAAAACGTACATGCTATACTGCATGCATGGAAATAAGGTTGATAAAAAAACGCTTCGAAATGCTTGCGCCAA
TACTTGACGAGAAAACACTCAGACTTTTTGTCGCTACGGAAGCATTGGCCCTTGGACGTGGAGGAATATCTCTGGTTTCCAAAGCTACTGGAATTTCCAG
ACCAACAATAGCAAACGGATGCAAAGAGATTCTTAAAGCAGAAAACTTTGAAATTTCCGGCGCTTCTTCCGGACGAATCCGTAAGCATGGCGGAGGACGT
AAGCGTACCGTATATAACGATTCGACCCTTTGCAGTGATCTTGAAAGTTTGATAGAACCAGAAACAGCAGGAGACCCAGAGTCGCCGCTTCGATGGACTT
GCAAAAGCGTTCGGAACCTTGCTCAAGAATTGAAAAACATGGGGCATAACACAAGTCATCGAATGGTGGCTGAACTGCTTCATGAAATGGAATACAGCCT
TCAGGCAAACAGAAAGATTCTTGAAGGAGATTCCCACCCGGACCGTGATGAACAATTTGAGTTTATCCACCAGAAAGTTACAGATTTTCAATCGCGTAGC
CAACCCGTCATTTCTGTGGATACCAAGAAGAAAGAACTTGTTGGAGATTTCAGAAACAACGGCAGTGAACTTCACCCGAAGGGAAACCCCGAAAAAGTAC
GAGTTCATGATTTTATGATTCCAAGCCTTGGCAAGGTGGCCCCATATGGTGTTTATGATCAAACCCAAAACAGTGGATGGGTCAATATCGGCACCGATCA
CGACACGGCCGCTTTTGCTGTTGAAAGCATTCGACGATGGTGGAATATCATGGGTAACGAAGTACATCCAAAAGCTCATCAATTACTGATTACAGCTGAC
GGCGGCGGTAGTAATGGATCCAGAATAAGGCTGTGGAAAACGGAGCTGCAAAAGTTTTCTAATGAAACTAACCTCGAAGTATCTGTATGCCATTTTCCAC
CGGGTACAAGCAAATGGAACAAAATTGAACATAGACTTTTTTCCTATATCAGCCAAAACTGGAGAGGAAAACCACTTGTCAGCCATGAAGTGATCATAAA
TCTTATTGCCTCTACAACAACACGAAAAGGATTAACAGTAAAATGTCAACTTGACACCAATAAATATCCGAAAGGTATTAAAATATCAGATAAGTATCTT
CGCCGAGTAAATATCAGTCGTAATGAATTCCATGGAGATTGGAATTATACAATAATGCCATATCGATCAACAGATAAATTGTAAACGTTATTTTGTGACA
ACTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa551284+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEIRLIKKRFEMLAPILDEKTLRLFVATEALALGRGGISLVSKATGISRPTIANGCKEILKAENFEISGASSGRIRKHGGGRKRTVYNDSTLCSDLESLI
EPETAGDPESPLRWTCKSVRNLAQELKNMGHNTSHRMVAELLHEMEYSLQANRKILEGDSHPDRDEQFEFIHQKVTDFQSRSQPVISVDTKKKELVGDFR
NNGSELHPKGNPEKVRVHDFMIPSLGKVAPYGVYDQTQNSGWVNIGTDHDTAAFAVESIRRWWNIMGNEVHPKAHQLLITADGGGSNGSRIRLWKTELQK
FSNETNLEVSVCHFPPGTSKWNKIEHRLFSYISQNWRGKPLVSHEVIINLIASTTTRKGLTVKCQLDTNKYPKGIKISDKYLRRVNISRNEFHGDWNYTI
MPYRSTDKL

 

Blast result :
Comments
ISDssp1 is 76% aa similar to ISArch20.
This IS is found in several clones of Uncultured Desulfobacterium sp.
References
1] ISfinder submission (2012)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137