ISShwo2

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010506 ND Shewanella woodyii
Shewanella woodyii
DNA section
IS Length : 612 bp

Ends


Left end : TTTCAGCCCTAAACCACCTACTTCAGTAGGTGGTTATCATCAATTAGGCTTTGCCTGAATATCTACTCATGTTAATTGAACTCTAACTTTTAGCGAAGTA II struct. : Yes
Right end : GTTGAAAAACAGGAGCAGCCGCAATTAGATTTGAAGTAGACAACGCCCCCTTTTAGGGGGCTAATACAAAGCCACCTTCTTCAGAAGGTGGATTCTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TCTAAGGGCTTTTTGTTTTATAGTGGAttac
AAGGCTCCTTTTTTGTTTGAAATATTGttac
CAAGGGCGCTTTTTGTTTTGCTAAAAAttac
GCAAGCCCCATTTTGTTATCTGTGTACTTAC
CATGGCTCTTTTTTGTTTTTAAGCTAGTTAC
AAAGGCGCTTTTTTGTTTTGATTGGTATTAC
ATTGGGCGTTTTTTGTTGTTAATACCATTAC
ATGTGGGGCTTTTTGTTGGAAAAGAGATTAC
TAGGCTCCTTTTTTGTTTATCTTGGTATTAC
ATTGCTGGCATTTTGTTTGCTTCTCTTTTAC
AGGCTCCCTTTTTTGTTTAAAGCCTAATTAC
ATGAAGGCTTTTTTGTTTGTGTGGTTTTTAC
TATGGCTCCTTTTTGTTTTTTGATACTTTAC

DNA sequence

TTTCAGCCCTAAACCACCTACTTCAGTAGGTGGTTATCATCAATTAGGCTTTGCCTGAATATCTACTCATGTTAATTGAACTCTAACTTTTAGCGAAGTA
ATAGAGGATAAAAAACATGAGTAGATATGAGAAAGCATCGCATGTGTATTGGCGATGTCAATATCACATAGTTTGGACACCTAAGTATAGGTTTAGGATT
TTAAAGAATAAGTTAGGAAAAGATGTTTACCGATGTATTCATGTCTATAGTGAGCAGTTAGGGTGTGTGGTTGTAGAGTTGAATGTACAAATAGACCATG
TACATCTGGTTATCAAAGTTCCTCCGAAGCTATCGATTTCAAAGTTGATGGGTGCTTTAAAAGGTAAAATTGCTTTGAAAATGTTTAGCAAGTATCCGTA
TCTTCGGAAAAATAAGCTATGGGGAAATCACTTTTGGCAAAGAGGTTACTTTGTTGACACAGTGGGGATTAATGAGGAAGTGATTCGAAGATATGTAAGG
CATCAAGAAAAGGTTGAAAAACAGGAGCAGCCGCAATTAGATTTGAAGTAGACAACGCCCCCTTTTAGGGGGCTAATACAAAGCCACCTTCTTCAGAAGG
TGGATTCTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
435 bp144 aa117551+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSRYEKASHVYWRCQYHIVWTPKYRFRILKNKLGKDVYRCIHVYSEQLGCVVVELNVQIDHVHLVIKVPPKLSISKLMGALKGKIALKMFSKYPYLRKNK
LWGNHFWQRGYFVDTVGINEEVIRRYVRHQEKVEKQEQPQLDLK

 

Blast result :
Comments
There are 13 copies of ISShwo2 encoded in the Shewanella woodyii genome. The ISShwo2 transposase has 80% identity with the ISShes8 transposase.
References
1]Romine, M. (2008) Direct submission.