ISShwo2
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010506 | ND | Shewanella woodyii | Shewanella woodyii |
DNA section
IS Length : 612 bp
Ends
Left end : TTTCAGCCCTAAACCACCTACTTCAGTAGGTGGTTATCATCAATTAGGCTTTGCCTGAATATCTACTCATGTTAATTGAACTCTAACTTTTAGCGAAGTA II struct. : Yes
Right end : GTTGAAAAACAGGAGCAGCCGCAATTAGATTTGAAGTAGACAACGCCCCCTTTTAGGGGGCTAATACAAAGCCACCTTCTTCAGAAGGTGGATTCTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCTAAGGGCTTT | TTGT | TTTATAGTGGA | ttac |
AAGGCTCCTTTT | TTGT | TTGAAATATTG | ttac |
CAAGGGCGCTTT | TTGT | TTTGCTAAAAA | ttac |
GCAAGCCCCATT | TTGT | TATCTGTGTAC | TTAC |
CATGGCTCTTTT | TTGT | TTTTAAGCTAG | TTAC |
AAAGGCGCTTTT | TTGT | TTTGATTGGTA | TTAC |
ATTGGGCGTTTT | TTGT | TGTTAATACCA | TTAC |
ATGTGGGGCTTT | TTGT | TGGAAAAGAGA | TTAC |
TAGGCTCCTTTT | TTGT | TTATCTTGGTA | TTAC |
ATTGCTGGCATT | TTGT | TTGCTTCTCTT | TTAC |
AGGCTCCCTTTT | TTGT | TTAAAGCCTAA | TTAC |
ATGAAGGCTTTT | TTGT | TTGTGTGGTTT | TTAC |
TATGGCTCCTTT | TTGT | TTTTTGATACT | TTAC |
DNA sequence
TTTCAGCCCTAAACCACCTACTTCAGTAGGTGGTTATCATCAATTAGGCTTTGCCTGAATATCTACTCATGTTAATTGAACTCTAACTTTTAGCGAAGTA
ATAGAGGATAAAAAACATGAGTAGATATGAGAAAGCATCGCATGTGTATTGGCGATGTCAATATCACATAGTTTGGACACCTAAGTATAGGTTTAGGATT
TTAAAGAATAAGTTAGGAAAAGATGTTTACCGATGTATTCATGTCTATAGTGAGCAGTTAGGGTGTGTGGTTGTAGAGTTGAATGTACAAATAGACCATG
TACATCTGGTTATCAAAGTTCCTCCGAAGCTATCGATTTCAAAGTTGATGGGTGCTTTAAAAGGTAAAATTGCTTTGAAAATGTTTAGCAAGTATCCGTA
TCTTCGGAAAAATAAGCTATGGGGAAATCACTTTTGGCAAAGAGGTTACTTTGTTGACACAGTGGGGATTAATGAGGAAGTGATTCGAAGATATGTAAGG
CATCAAGAAAAGGTTGAAAAACAGGAGCAGCCGCAATTAGATTTGAAGTAGACAACGCCCCCTTTTAGGGGGCTAATACAAAGCCACCTTCTTCAGAAGG
TGGATTCTTTAC
ATAGAGGATAAAAAACATGAGTAGATATGAGAAAGCATCGCATGTGTATTGGCGATGTCAATATCACATAGTTTGGACACCTAAGTATAGGTTTAGGATT
TTAAAGAATAAGTTAGGAAAAGATGTTTACCGATGTATTCATGTCTATAGTGAGCAGTTAGGGTGTGTGGTTGTAGAGTTGAATGTACAAATAGACCATG
TACATCTGGTTATCAAAGTTCCTCCGAAGCTATCGATTTCAAAGTTGATGGGTGCTTTAAAAGGTAAAATTGCTTTGAAAATGTTTAGCAAGTATCCGTA
TCTTCGGAAAAATAAGCTATGGGGAAATCACTTTTGGCAAAGAGGTTACTTTGTTGACACAGTGGGGATTAATGAGGAAGTGATTCGAAGATATGTAAGG
CATCAAGAAAAGGTTGAAAAACAGGAGCAGCCGCAATTAGATTTGAAGTAGACAACGCCCCCTTTTAGGGGGCTAATACAAAGCCACCTTCTTCAGAAGG
TGGATTCTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
435 bp | 144 aa | 117 | 551 | + | No |
Chemistry : Y1
ORF sequence :
MSRYEKASHVYWRCQYHIVWTPKYRFRILKNKLGKDVYRCIHVYSEQLGCVVVELNVQIDHVHLVIKVPPKLSISKLMGALKGKIALKMFSKYPYLRKNK
LWGNHFWQRGYFVDTVGINEEVIRRYVRHQEKVEKQEQPQLDLK
LWGNHFWQRGYFVDTVGINEEVIRRYVRHQEKVEKQEQPQLDLK
Blast result :
Comments
There are 13 copies of ISShwo2 encoded in the Shewanella woodyii genome. The ISShwo2 transposase has 80% identity with the ISShes8 transposase.
References
1]Romine, M. (2008) Direct submission.