ISThsp7

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1920 bp

Ends


IR Length : 12/13

IRL : CTGAGTTCGACAGTTCGAAGCCGTTGCGCAGCCACAAACAATCGCCGGGG
IRR : CCGAGTTCGACACCAACTGTCGTAAGTGCTTGATCTGTCTATGGCAGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCGAGAGGTCGCCCGCCCGCCGCCTCAGTGGCCA4

DNA sequence

CTGAGTTCGACAGTTCGAAGCCGTTGCGCAGCCACAAACAATCGCCGGGGTCCTATGAATCAATCACTTGCAAGCGCTCAGAAGGGCGTTTTCAGATTTC
TTTGTAGTGCCAATTTACTACCGTGAAGTAGTTCATCTGCGCGTGCGCAGCGCTATACTTGGTGCATGTTCCTCAAGATCTCCTCCTCGGGCGGTCACCG
CTACGTTCGGCTGGTGGAGTCGTTCCGCAACGCGGATGGCCAACCCCGGCAACGCACGATCGCAACCCTCGGGCGTCTGGACGAACAGGGCGGACCGCTC
GATGCCCTGCTGGGGGCCTTGCTGCGGGCCAAGGGTCGGCCTTCGGGCGACAGTGATCCGTCTCAGGTGCGCTTCGAGTCGGCGCTGACGTTGGGCGATG
TTTGGGCCCTGCACGCCTTGTGGCACGAACTCGGATTCCATGGCCTGGGCGCCATCTTCCGGCGCGCCCGGTTCACCACTGCGGTCGAGCACGCGATCCG
TGTGATGGTCTTCAACCGACTGTGCGACCCAGACTCCAAGCTGGGCGTGCTGCGCTGGCTGCAGACCGTCAGCATGCCCGGCATCGACGTGGACAAGCTG
ACGCATCAGCACTTGCTGCGCAGCATGGATGCCCTGATGGACCACCAGCAAGCCGTCGACGACTGCGTGGCCCAGTTGCTGCGCCCGCTCATTGATGAAG
ACCTCTCGGTGGTCTTTTACGATCTGACCACCATCCGCGCCGAAGGTCTCAGCCAGCAAGACGGTGATGTACGCCACTTCGGCCTGTCCAAGGAGGGCGT
GATCGCCCGGCAGTTCCTGCTGGGCGTGGTGCAGACAGCCGACGGCATGCCGATCTTCCACGAGGTGTTCGACGGCAACGCCGCCGAGGCGCCGACCCTG
GAGCCCACCTTGAAGAAGGTGCTCTCGCGCTACCCGCACATCAGGCGCCTGGTGGTGGTGGCCGACCGCGGGCTACTTTCGCTTGACAACATCGAGGCGT
TGTCCAAGTTGCATGGGGCTGGAGATCGGCCGCTGGAGTTCATCCTGGCGGTGCCGGGGCGACGCTACGGTGAGTTTGTCGATCTTCTCGAGCCCATGAG
CGAGCGTGCTGCCCAGGCCAACCAGGAGATCGTCGAAGAGGCGCAGTGGCAAGGCCATCGCCTGGTGGTGGTCCACAGCCCCGTGCGAGCGACCGAGCAA
ACCCAGGAGCGCCTTGCACGCATCCATGCCTTGCAGCAACGCGCCGATCAGTTGGCCGGCAAGCTCGACGCCCAGGACGAAGGCAAAGTCCAGCGCGGGC
GCAAGCTCTCGGATTCCGGCGCCAAGGCCCGCTTCTTCCACGAAGTCAGCGACGCCCGCCTGGCGCGCATCATCAAGGTGGACCTGCAGTCCGATCTGTT
CACCTATGCGATCGATGAAACCGCACTCGCGCGAGCGCAACTCATGGACGGCAAGCTGATGCTGGTCACCAATGTCCAGGATCTGAGCCCGGCCGAGGTG
GTGCGGCGCTACAAGTCGCTGGCCGACATCGAGCGTGGCTTCAAGGTGCTCAAGTCCGAGATCGAGATCGCCCCGGTGTTCCACCGCCGGCCCGAGCGCA
TCAAGGCCCACGCCAGCCTGTGCTTCATCGCGCTGATCCTGTACCGCGTCATGCGCCAGCGCCTCAAACTCGCCAGCAGCGAACTGTCTCCAGAAACCGC
CCTGGCCGACCTGCGCCGCATCCAGCGCCACACCGTGCGCATCGACAGCGGCGCCCCCATCCACGGCATCTCCACCATCCAACCTCGCCAGGCCGATGTC
CTGGCCGCACTCAACATCAAAAAACCCACCCAAGACACCCAACTGCCCCTGCTGTAGTGGCAATTTCAACAACCTGCCATAGACAGATCAAGCACTTACG
ACAGTTGGTGTCGAACTCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1692 bp563 aa1661857+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFLKISSSGGHRYVRLVESFRNADGQPRQRTIATLGRLDEQGGPLDALLGALLRAKGRPSGDSDPSQVRFESALTLGDVWALHALWHELGFHGLGAIFRR
ARFTTAVEHAIRVMVFNRLCDPDSKLGVLRWLQTVSMPGIDVDKLTHQHLLRSMDALMDHQQAVDDCVAQLLRPLIDEDLSVVFYDLTTIRAEGLSQQDG
DVRHFGLSKEGVIARQFLLGVVQTADGMPIFHEVFDGNAAEAPTLEPTLKKVLSRYPHIRRLVVVADRGLLSLDNIEALSKLHGAGDRPLEFILAVPGRR
YGEFVDLLEPMSERAAQANQEIVEEAQWQGHRLVVVHSPVRATEQTQERLARIHALQQRADQLAGKLDAQDEGKVQRGRKLSDSGAKARFFHEVSDARLA
RIIKVDLQSDLFTYAIDETALARAQLMDGKLMLVTNVQDLSPAEVVRRYKSLADIERGFKVLKSEIEIAPVFHRRPERIKAHASLCFIALILYRVMRQRL
KLASSELSPETALADLRRIQRHTVRIDSGAPIHGISTIQPRQADVLAALNIKKPTQDTQLPLL

 

Blast result :
Comments
ISThsp7 is 75% aa similar to ISAzo6.
References
1] Stephanie Weiss (2008) Direct submission.