ISfinder Mirror Site

ISMysp6

Family IS481
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008146	ND	Mycobacterium sp.	Mycobacterium sp. MCS

DNA section

IS Length : 1077 bp

Ends

IR Length : 19/21

IRL : TGTACCGAGACAGGACGTTGGTAGCGGGCGTGTTGGCTTGATGTGAGGAG
IRR : TGTACCGAGTCATGAGGTTGGTGTCAGTCGGCTGATCGGTGGGAGGCCGC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CGCTGCCGGCA	TCTAGC	GGCTGTCATCCCA	6

DNA sequence

TGTACCGAGACAGGACGTTGGTAGCGGGCGTGTTGGCTTGATGTGAGGAGAACCTCCGGGTGGGGTGTGGCTTGTCTAGGTCCATACCGTCCGGAGGTTC
TCGTGTCCCACCGTAATGCTCGTACGACGTTTCATGGTCGGCTGTTGATGGTGCGCCGCCATCAGGCCGGTTGGCCCAAGGCTCATATCGCCAGTGCGAT
GGGGGTGTCACGCAAGTGCGTGCACACCTGGATCAGCCGGTTCGAGGCCGACGGCGAGGCCGGGCTGATCGACCGCTCCTCGCGGCCCCACACCTCGCCA
ATGCGCACCGCGCAGCGGCTGGAGAACCAAATCGTGGCCTGGCGGCGCCGTCACCGTTGCGGCCCGGAGGAAATCGGCGCGAAGTTGGGGGTGTCGGCTC
GGACAGTGTCCCGGGTATTGCACCGCCGTGGTGCGCCCTACCTGCGGGATTGCGATCCGATGACCGGACAGGTCATCCGCGCCTCAAAGTCCACGGCGGT
GCGTTATGAGCGCGGCCGACCCGGCGAACTGGTCCACATGGACGTTAAGAAATTGGGCCGTATCCCTGACGGCGGTGGCTGGCGAGCCCACGGTCGAGGC
TGTGCACCTGACCGCAAGCGGTTGCGCGGCAATGGATTCGACTACATCCACTCACTTGTCGACGATCACAGCCGGCTGGCGTACTCCGAAATCCTGCCCG
ACGAGAAAGGCTCCACCTGCGCCGGGTTCCTCGAACGCGCAGCCCACTACTTCCGCGCCCACGGCATCACCACCATCGAGCAGGTCATGACCGACAACGC
CTGGGCCTACCGGTATTCCCTGCGCGATGTCTGCACCCAGCTCGGTGCCCGCCAAATCTTCATCAGGCCCCACTGCCCCTGGCAGAACGGCAAGGTAGAG
CGGCTCAACCGAACCCTGCAGACCGAATGGGCCTACAAGCGGGTCTTCACCTCCAATGCCCACCGCGCCGCCGCGCTTGCGCCCTGGCTCAAGCACTACA
ACACTCAACGCCGTCACAGTGCACTCGGCGGCCTCCCACCGATCAGCCGACTGACACCAACCTCATGACTCGGTACA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1002 bp	333 aa	67	1068	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFEADGEAGLIDRSSRPHTSPMRTAQRLENQIVAWRRRHRCGP
EEIGAKLGVSARTVSRVLHRRGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDVKKLGRIPDGGGWRAHGRGCAPDRKRLRGNGFDYIHSLVDD
HSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQVMTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHR
AAALAPWLKHYNTQRRHSALGGLPPISRLTPTS

Blast result :

Comments

ISMysp6 is 87% aa similar to ISMyma4.

References

1] ISfinder annotation (2008)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J., Sims,R.C. and Richardson,P. (2006) Direct submission GenBank.