ISStpr1

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NW_002063180 ND Streptomyces pristinaespiralis
Streptomyces pristinaespiralis ATCC 25486
DNA section
IS Length : 1052 bp

Ends


IR Length : 20/25

IRL : TGTATTGATCACGAGCGTTGTTGACACTGGCCGGGCTTGATCATGGCGAA
IRR : TGTATTGACCCGCAGCGTTGTTCACGCGGCTGATGGGTGGCTTGCCTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGCGCGCCGCCGGCTAGCGCGTCCCGCGGCGCCG6

DNA sequence

TGTATTGATCACGAGCGTTGTTGACACTGGCCGGGCTTGATCATGGCGAAGACCTCCGGTGTGGTGGAGCTGTCTAGGACTGCACCGCACGGAGGTCTTC
GTGTCCCACCGTAATGCCCGGCTGACCATTCACGGCAGGCGGCTGCTCGTCGAACGCGTCAGTGCAGGCCGTCCGGTCGCTCATGTCGCGGCCGAGATGG
GCATCTCGCGAGCCACGGCCCACAAGTGGATCCGCCGTTGGCGATCCGAGGGCGAGTCAGGGCTGCGCGACCGCTCCAGTCGGCCGCTGACGACTCCCCA
CCGCACGGCGGCAGCGGTGGAGGCCCGGGTGTGCCGATTGCGGCAGGCACGCAAGCTGGGACCGGCCCGTCTGGGGCCGATCCTGGGCTTGCCCGCCTCG
ACCGTGCACCGCGTCCTGGTTCGTCACGGCCTCAACCGGCTCGCGTTCATGGACCGGCCCACCGGTCAGGTCATCCGCCGCTACGAACGCGCCCACCCCG
GCGAACTCATCCACGTCGACGTCAAAAAACTCGGCCGGATACCCGACGGCGGCGGCCACAAGGTCCTGGGCCGCCAGGCCGGCCGCGCCAGGCGCAGCCA
GATGGGCTTCGACTACGTCCACTCCGCCGTCGACGACCACAGCCGGCTCGCCTACAGCGAGATCCACAGCGACGAGAAGGCCGCCACCTGCGCAGACTTC
CTCCGCCGGGCCGCAGCCTTCTTCACCACCGTGGGCATCGACCGCATCGAACGCGTCCTGACCGACAACGCCTGGCCGTACCGCAAGAGCTTCGCCTGGC
GCCAGGCGCTCACAGACCTCGGTGCGGCCGGCAAGCTCACCCGCGCCTACCGGCCGCAGACCAACGGCAAGGTCGAACGCTTCAACCGCACCCTGCTCGA
CGAATGGGCCTACCTGCGCCCCTACACCAGCAACACCGAACGCACCGACGCCCTGGCAAACTTCCTGCACACCTACAACCACCACCGCTGCCACACCGCA
CTCGGAGGCAAGCCACCCATCAGCCGCGTGAACAACGCTGCGGGTCAATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa591057+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MWWSCLGLHRTEVFVSHRNARLTIHGRRLLVERVSAGRPVAHVAAEMGISRATAHKWIRRWRSEGESGLRDRSSRPLTTPHRTAAAVEARVCRLRQARKL
GPARLGPILGLPASTVHRVLVRHGLNRLAFMDRPTGQVIRRYERAHPGELIHVDVKKLGRIPDGGGHKVLGRQAGRARRSQMGFDYVHSAVDDHSRLAYS
EIHSDEKAATCADFLRRAAAFFTTVGIDRIERVLTDNAWPYRKSFAWRQALTDLGAAGKLTRAYRPQTNGKVERFNRTLLDEWAYLRPYTSNTERTDALA
NFLHTYNHHRCHTALGGKPPISRVNNAAGQYS

 

Blast result :
Comments
ISStpr1 is 70% aa similar to IS1652. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2008)
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Gujja,S., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.