ISStpr1
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NW_002063180 | ND | Streptomyces pristinaespiralis | Streptomyces pristinaespiralis ATCC 25486 |
DNA section
IS Length : 1052 bp
Ends
IR Length : 20/25
IRL : TGTATTGATCACGAGCGTTGTTGACACTGGCCGGGCTTGATCATGGCGAA
IRR : TGTATTGACCCGCAGCGTTGTTCACGCGGCTGATGGGTGGCTTGCCTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGCGCGCCGCCG | GCTAGC | GCGTCCCGCGGCGCCG | 6 |
DNA sequence
TGTATTGATCACGAGCGTTGTTGACACTGGCCGGGCTTGATCATGGCGAAGACCTCCGGTGTGGTGGAGCTGTCTAGGACTGCACCGCACGGAGGTCTTC
GTGTCCCACCGTAATGCCCGGCTGACCATTCACGGCAGGCGGCTGCTCGTCGAACGCGTCAGTGCAGGCCGTCCGGTCGCTCATGTCGCGGCCGAGATGG
GCATCTCGCGAGCCACGGCCCACAAGTGGATCCGCCGTTGGCGATCCGAGGGCGAGTCAGGGCTGCGCGACCGCTCCAGTCGGCCGCTGACGACTCCCCA
CCGCACGGCGGCAGCGGTGGAGGCCCGGGTGTGCCGATTGCGGCAGGCACGCAAGCTGGGACCGGCCCGTCTGGGGCCGATCCTGGGCTTGCCCGCCTCG
ACCGTGCACCGCGTCCTGGTTCGTCACGGCCTCAACCGGCTCGCGTTCATGGACCGGCCCACCGGTCAGGTCATCCGCCGCTACGAACGCGCCCACCCCG
GCGAACTCATCCACGTCGACGTCAAAAAACTCGGCCGGATACCCGACGGCGGCGGCCACAAGGTCCTGGGCCGCCAGGCCGGCCGCGCCAGGCGCAGCCA
GATGGGCTTCGACTACGTCCACTCCGCCGTCGACGACCACAGCCGGCTCGCCTACAGCGAGATCCACAGCGACGAGAAGGCCGCCACCTGCGCAGACTTC
CTCCGCCGGGCCGCAGCCTTCTTCACCACCGTGGGCATCGACCGCATCGAACGCGTCCTGACCGACAACGCCTGGCCGTACCGCAAGAGCTTCGCCTGGC
GCCAGGCGCTCACAGACCTCGGTGCGGCCGGCAAGCTCACCCGCGCCTACCGGCCGCAGACCAACGGCAAGGTCGAACGCTTCAACCGCACCCTGCTCGA
CGAATGGGCCTACCTGCGCCCCTACACCAGCAACACCGAACGCACCGACGCCCTGGCAAACTTCCTGCACACCTACAACCACCACCGCTGCCACACCGCA
CTCGGAGGCAAGCCACCCATCAGCCGCGTGAACAACGCTGCGGGTCAATACA
GTGTCCCACCGTAATGCCCGGCTGACCATTCACGGCAGGCGGCTGCTCGTCGAACGCGTCAGTGCAGGCCGTCCGGTCGCTCATGTCGCGGCCGAGATGG
GCATCTCGCGAGCCACGGCCCACAAGTGGATCCGCCGTTGGCGATCCGAGGGCGAGTCAGGGCTGCGCGACCGCTCCAGTCGGCCGCTGACGACTCCCCA
CCGCACGGCGGCAGCGGTGGAGGCCCGGGTGTGCCGATTGCGGCAGGCACGCAAGCTGGGACCGGCCCGTCTGGGGCCGATCCTGGGCTTGCCCGCCTCG
ACCGTGCACCGCGTCCTGGTTCGTCACGGCCTCAACCGGCTCGCGTTCATGGACCGGCCCACCGGTCAGGTCATCCGCCGCTACGAACGCGCCCACCCCG
GCGAACTCATCCACGTCGACGTCAAAAAACTCGGCCGGATACCCGACGGCGGCGGCCACAAGGTCCTGGGCCGCCAGGCCGGCCGCGCCAGGCGCAGCCA
GATGGGCTTCGACTACGTCCACTCCGCCGTCGACGACCACAGCCGGCTCGCCTACAGCGAGATCCACAGCGACGAGAAGGCCGCCACCTGCGCAGACTTC
CTCCGCCGGGCCGCAGCCTTCTTCACCACCGTGGGCATCGACCGCATCGAACGCGTCCTGACCGACAACGCCTGGCCGTACCGCAAGAGCTTCGCCTGGC
GCCAGGCGCTCACAGACCTCGGTGCGGCCGGCAAGCTCACCCGCGCCTACCGGCCGCAGACCAACGGCAAGGTCGAACGCTTCAACCGCACCCTGCTCGA
CGAATGGGCCTACCTGCGCCCCTACACCAGCAACACCGAACGCACCGACGCCCTGGCAAACTTCCTGCACACCTACAACCACCACCGCTGCCACACCGCA
CTCGGAGGCAAGCCACCCATCAGCCGCGTGAACAACGCTGCGGGTCAATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 59 | 1057 | + | No |
Chemistry : DDE
ORF sequence :
MWWSCLGLHRTEVFVSHRNARLTIHGRRLLVERVSAGRPVAHVAAEMGISRATAHKWIRRWRSEGESGLRDRSSRPLTTPHRTAAAVEARVCRLRQARKL
GPARLGPILGLPASTVHRVLVRHGLNRLAFMDRPTGQVIRRYERAHPGELIHVDVKKLGRIPDGGGHKVLGRQAGRARRSQMGFDYVHSAVDDHSRLAYS
EIHSDEKAATCADFLRRAAAFFTTVGIDRIERVLTDNAWPYRKSFAWRQALTDLGAAGKLTRAYRPQTNGKVERFNRTLLDEWAYLRPYTSNTERTDALA
NFLHTYNHHRCHTALGGKPPISRVNNAAGQYS
GPARLGPILGLPASTVHRVLVRHGLNRLAFMDRPTGQVIRRYERAHPGELIHVDVKKLGRIPDGGGHKVLGRQAGRARRSQMGFDYVHSAVDDHSRLAYS
EIHSDEKAATCADFLRRAAAFFTTVGIDRIERVLTDNAWPYRKSFAWRQALTDLGAAGKLTRAYRPQTNGKVERFNRTLLDEWAYLRPYTSNTERTDALA
NFLHTYNHHRCHTALGGKPPISRVNNAAGQYS
Blast result :
Comments
ISStpr1 is 70% aa similar to IS1652. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2008)
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Gujja,S., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A., Heiman,D., Hepburn,T., Sykes,S., Gujja,S., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B. (2008) Direct submission GenBank.