ISPa27
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1361 bp
Ends
IR Length : 23/29
IRL : GAGGGTGTCAGAAATTTTGTGTTCGGGCATAACATGAGTAAGAGGTGCAT
IRR : GGGAAGTGTCAGATTTTTTGTGTGCGGGCCGGTAACGGCCTGCCGTCAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCAGGGCAC | CACCACC | AAGTCGCGCG | 7 |
DNA sequence
GAGGGTGTCAGAAATTTTGTGTTCGGGCATAACATGAGTAAGAGGTGCATGTACGCCAACCAAAAAGAAACCCTTGCGTGACCTGCCCAAAATCCCCAAA
GAGCTGCTGGAGCAGTTCGGTGAGGGTCTGATGACCGCAGAGGCTATCGAGGATGCCTCTGCGGCGTTCAAGAAGGCCTTGATCGAGCGCGCTCTGCATG
CCGAACTTGGCCACCACCTGGGCTATCCGCCGGGCGCGCAGCGCCCAGAGGATGAAACCAATCAGCGTAACGGCAAGAGTGGCCCGACGGTTTTGACCGG
TGATGGCCCGCTGCGGCTGGAAATTCCTCGTGACCGAGACGGCAGTTTTGCGCCCATTCTCATCCCCAAGCATGAGCGGCGGTACACCGGTTTCGATGAC
AAGATCATCGCCATGTACGCCCGTGGCATGACGGTCAGAGAGATCCGGGCCTTTCTGTCCGAGCAGTATGGAACAGAGGTCTCACCCGACTTCATCAGCT
CTGTGACAGACGAGGTCATGGAAGAGATTGGCACGTGGCAACAACGGCCACTGGAGCCGATGTACCCGGTTATTTTCTTCGATGCGCTGCGGGTGAAGAT
CCGCGAAGAAGGCTTGGTGCGCAGCAAGGCCATTTACTTGGCGCTGGGCGTTCTACCCGACGGGACGCGCGATATCTTGGGCATCTGGATCGAGAACACC
GAGGGTGCGAAGTTCTGGATGAAGGTCTTCAACGATCTCAAGACACGTTGTGTCGAGGATGTGCTGATTGCCGTGGCCGATGGCCTCAAAGGCATGCCAG
AGGCTCTCAGCGCCGTGTTTCCAGAGGGACGCTGCAGACCTGTATCGTGCACCTGATCCGCGACAGCCTGGACTACGCGGCCTGGGACAAGCGCCGGGCA
CTGGCCAAGGCGCTCAAGCCGATCTACCAGGCCATCAACGCCGAAACGGCTGAGCAGGCACTCGATGAGTTTGAAAACGGGCCCTGGGGCAAGCAGTATC
CAACGGTCGTTACGGCCTGGAGACGGCCTGGGATCGAGTGATTCCCTTCTTTGTCTTCCCGCCAGCCATCCGGAAAGTGATCTACACCACCAACGCCATC
GAGAGTATCAATGCCCAGCTGCGCAAGATCATTAAGACCCGAGGCCATTTCCCGAACGATGACGCAGCTACCAAGCTGATCTGGCTGGGGCTGCGAAACA
TCACGGCGAACTGGGGCTCAGCGGCGCATAATTGGAAAAGTGCAATGAATCAATTCGCGATTTTGTACGGAGATCGGTTCATCAGGGCGACTTGGTGAAA
GTCAGGGCCTGCCTGACGGCAGGCCGTTACCGGCCCGCACACAAAAAATCTGACACTTCCC
GAGCTGCTGGAGCAGTTCGGTGAGGGTCTGATGACCGCAGAGGCTATCGAGGATGCCTCTGCGGCGTTCAAGAAGGCCTTGATCGAGCGCGCTCTGCATG
CCGAACTTGGCCACCACCTGGGCTATCCGCCGGGCGCGCAGCGCCCAGAGGATGAAACCAATCAGCGTAACGGCAAGAGTGGCCCGACGGTTTTGACCGG
TGATGGCCCGCTGCGGCTGGAAATTCCTCGTGACCGAGACGGCAGTTTTGCGCCCATTCTCATCCCCAAGCATGAGCGGCGGTACACCGGTTTCGATGAC
AAGATCATCGCCATGTACGCCCGTGGCATGACGGTCAGAGAGATCCGGGCCTTTCTGTCCGAGCAGTATGGAACAGAGGTCTCACCCGACTTCATCAGCT
CTGTGACAGACGAGGTCATGGAAGAGATTGGCACGTGGCAACAACGGCCACTGGAGCCGATGTACCCGGTTATTTTCTTCGATGCGCTGCGGGTGAAGAT
CCGCGAAGAAGGCTTGGTGCGCAGCAAGGCCATTTACTTGGCGCTGGGCGTTCTACCCGACGGGACGCGCGATATCTTGGGCATCTGGATCGAGAACACC
GAGGGTGCGAAGTTCTGGATGAAGGTCTTCAACGATCTCAAGACACGTTGTGTCGAGGATGTGCTGATTGCCGTGGCCGATGGCCTCAAAGGCATGCCAG
AGGCTCTCAGCGCCGTGTTTCCAGAGGGACGCTGCAGACCTGTATCGTGCACCTGATCCGCGACAGCCTGGACTACGCGGCCTGGGACAAGCGCCGGGCA
CTGGCCAAGGCGCTCAAGCCGATCTACCAGGCCATCAACGCCGAAACGGCTGAGCAGGCACTCGATGAGTTTGAAAACGGGCCCTGGGGCAAGCAGTATC
CAACGGTCGTTACGGCCTGGAGACGGCCTGGGATCGAGTGATTCCCTTCTTTGTCTTCCCGCCAGCCATCCGGAAAGTGATCTACACCACCAACGCCATC
GAGAGTATCAATGCCCAGCTGCGCAAGATCATTAAGACCCGAGGCCATTTCCCGAACGATGACGCAGCTACCAAGCTGATCTGGCTGGGGCTGCGAAACA
TCACGGCGAACTGGGGCTCAGCGGCGCATAATTGGAAAAGTGCAATGAATCAATTCGCGATTTTGTACGGAGATCGGTTCATCAGGGCGACTTGGTGAAA
GTCAGGGCCTGCCTGACGGCAGGCCGTTACCGGCCCGCACACAAAAAATCTGACACTTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
726 bp | 241 aa | 131 | 856 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
The protein sequence is degenerate with insertion of stop codons and there is no other copies.
ISPa27 is 93% aa similar to ISPsy17.
ISPa27 is 93% aa similar to ISPsy17.
References
1]Poirel, L. (2008) Direct submission.