ISPa27

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1361 bp

Ends


IR Length : 23/29

IRL : GAGGGTGTCAGAAATTTTGTGTTCGGGCATAACATGAGTAAGAGGTGCAT
IRR : GGGAAGTGTCAGATTTTTTGTGTGCGGGCCGGTAACGGCCTGCCGTCAGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCAGGGCACCACCACCAAGTCGCGCG7

DNA sequence

GAGGGTGTCAGAAATTTTGTGTTCGGGCATAACATGAGTAAGAGGTGCATGTACGCCAACCAAAAAGAAACCCTTGCGTGACCTGCCCAAAATCCCCAAA
GAGCTGCTGGAGCAGTTCGGTGAGGGTCTGATGACCGCAGAGGCTATCGAGGATGCCTCTGCGGCGTTCAAGAAGGCCTTGATCGAGCGCGCTCTGCATG
CCGAACTTGGCCACCACCTGGGCTATCCGCCGGGCGCGCAGCGCCCAGAGGATGAAACCAATCAGCGTAACGGCAAGAGTGGCCCGACGGTTTTGACCGG
TGATGGCCCGCTGCGGCTGGAAATTCCTCGTGACCGAGACGGCAGTTTTGCGCCCATTCTCATCCCCAAGCATGAGCGGCGGTACACCGGTTTCGATGAC
AAGATCATCGCCATGTACGCCCGTGGCATGACGGTCAGAGAGATCCGGGCCTTTCTGTCCGAGCAGTATGGAACAGAGGTCTCACCCGACTTCATCAGCT
CTGTGACAGACGAGGTCATGGAAGAGATTGGCACGTGGCAACAACGGCCACTGGAGCCGATGTACCCGGTTATTTTCTTCGATGCGCTGCGGGTGAAGAT
CCGCGAAGAAGGCTTGGTGCGCAGCAAGGCCATTTACTTGGCGCTGGGCGTTCTACCCGACGGGACGCGCGATATCTTGGGCATCTGGATCGAGAACACC
GAGGGTGCGAAGTTCTGGATGAAGGTCTTCAACGATCTCAAGACACGTTGTGTCGAGGATGTGCTGATTGCCGTGGCCGATGGCCTCAAAGGCATGCCAG
AGGCTCTCAGCGCCGTGTTTCCAGAGGGACGCTGCAGACCTGTATCGTGCACCTGATCCGCGACAGCCTGGACTACGCGGCCTGGGACAAGCGCCGGGCA
CTGGCCAAGGCGCTCAAGCCGATCTACCAGGCCATCAACGCCGAAACGGCTGAGCAGGCACTCGATGAGTTTGAAAACGGGCCCTGGGGCAAGCAGTATC
CAACGGTCGTTACGGCCTGGAGACGGCCTGGGATCGAGTGATTCCCTTCTTTGTCTTCCCGCCAGCCATCCGGAAAGTGATCTACACCACCAACGCCATC
GAGAGTATCAATGCCCAGCTGCGCAAGATCATTAAGACCCGAGGCCATTTCCCGAACGATGACGCAGCTACCAAGCTGATCTGGCTGGGGCTGCGAAACA
TCACGGCGAACTGGGGCTCAGCGGCGCATAATTGGAAAAGTGCAATGAATCAATTCGCGATTTTGTACGGAGATCGGTTCATCAGGGCGACTTGGTGAAA
GTCAGGGCCTGCCTGACGGCAGGCCGTTACCGGCCCGCACACAAAAAATCTGACACTTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
726 bp241 aa131856+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
The protein sequence is degenerate with insertion of stop codons and there is no other copies.
ISPa27 is 93% aa similar to ISPsy17.
References
1]Poirel, L. (2008) Direct submission.