ISSba18
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009999 | ND | Shewanella baltica | Shewanella baltica OS233 Shewanella baltica OS195 Shewanella baltica OS185 |
DNA section
IS Length : 829 bp
Ends
IR Length : 14/16
IRL : GGTTTTGTCGCAAAGTTGACGATGTAAATCATAATGTTAATACTATTCCG
IRR : GGTTCTGTCGCAAACTGATATCTTGCGGCTATAATTTGAGGGCGCAAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTAACATT | CCGTTTGCCA | 0 | |
CGCTTTATCT | CCGTTTGCCA | 0 |
DNA sequence
GGTTTTGTCGCAAAGTTGACGATGTAAATCATAATGTTAATACTATTCCGATATTTCTCCGAGTCTCAATAGCATGACAATCAACTTTTCAGGACGACAT
TATCCACCAGATATCATCATGATGGCGTTGCGTTATTACCTGGCTTATAAACTCAGTTATCGTGAAATAGAAGAAATATTCGCTGAGCGTCATATTCATT
TTGACCACTCAACCTTGAACCGGTGGGTGATTAAATACGCACCGCAACTCGATGCTATATTCAGGAATAAAAAACGTCGAGTCTCTGGCTCCTGGCGAAT
GGATGAAACCTACATCAAAGTAAAAGGTCGCTGGGTTTACTATTATCGAGCTGTCGATAAGTATGGTACTATTATTGACTTTTATTTGAGTGAAACCCGC
GACGAGTCAGCTGCTCAGGCATTTTTCAACAAAGCCATCAACCAACATGGGTTGCCAGAAAAGGTTGTTATTGATAAAAGCAGTGCTAATGCTGCTGCAT
TAGATACGGTCAACCTTCGCCTTTGGTTATCTGGGAATATGCTGTTTATGATTGAAGTATTGGCAATCAAATATCTGAATAATATTGTCGAGCAAAGCCA
TCGAAAAGTGAAGGGAAAAATGCATCAATGTCTAGGATGGAAATCTTGGCTTGGTGCAGAGGCAACATTAGCGGGTATTGAAGTGTGCGACATGATTAAA
AAAGGTCAGATGATGAGCGCTGAAAATATGACACCATGGGAGCAGTTTTATGCTTTGGCGGCATAGTTGTATCTGAGAGGGCTTGCGCCCTCAAATTATA
GCCGCAAGATATCAGTTTGCGACAGAACC
TATCCACCAGATATCATCATGATGGCGTTGCGTTATTACCTGGCTTATAAACTCAGTTATCGTGAAATAGAAGAAATATTCGCTGAGCGTCATATTCATT
TTGACCACTCAACCTTGAACCGGTGGGTGATTAAATACGCACCGCAACTCGATGCTATATTCAGGAATAAAAAACGTCGAGTCTCTGGCTCCTGGCGAAT
GGATGAAACCTACATCAAAGTAAAAGGTCGCTGGGTTTACTATTATCGAGCTGTCGATAAGTATGGTACTATTATTGACTTTTATTTGAGTGAAACCCGC
GACGAGTCAGCTGCTCAGGCATTTTTCAACAAAGCCATCAACCAACATGGGTTGCCAGAAAAGGTTGTTATTGATAAAAGCAGTGCTAATGCTGCTGCAT
TAGATACGGTCAACCTTCGCCTTTGGTTATCTGGGAATATGCTGTTTATGATTGAAGTATTGGCAATCAAATATCTGAATAATATTGTCGAGCAAAGCCA
TCGAAAAGTGAAGGGAAAAATGCATCAATGTCTAGGATGGAAATCTTGGCTTGGTGCAGAGGCAACATTAGCGGGTATTGAAGTGTGCGACATGATTAAA
AAAGGTCAGATGATGAGCGCTGAAAATATGACACCATGGGAGCAGTTTTATGCTTTGGCGGCATAGTTGTATCTGAGAGGGCTTGCGCCCTCAAATTATA
GCCGCAAGATATCAGTTTGCGACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
693 bp | 230 aa | 74 | 766 | + | No |
Chemistry : DDE
ORF sequence :
MTINFSGRHYPPDIIMMALRYYLAYKLSYREIEEIFAERHIHFDHSTLNRWVIKYAPQLDAIFRNKKRRVSGSWRMDETYIKVKGRWVYYYRAVDKYGTI
IDFYLSETRDESAAQAFFNKAINQHGLPEKVVIDKSSANAAALDTVNLRLWLSGNMLFMIEVLAIKYLNNIVEQSHRKVKGKMHQCLGWKSWLGAEATLA
GIEVCDMIKKGQMMSAENMTPWEQFYALAA
IDFYLSETRDESAAQAFFNKAINQHGLPEKVVIDKSSANAAALDTVNLRLWLSGNMLFMIEVLAIKYLNNIVEQSHRKVKGKMHQCLGWKSWLGAEATLA
GIEVCDMIKKGQMMSAENMTPWEQFYALAA
Blast result :
Comments
There is one copy of ISSba8 encoded by both S. baltica OS195 and S. baltica OS185. In each case the element is plasmid encoded. The transposase that it encodes has 89% ID to that encoded by ISSpu17.
References
1] Romine, M.F. (2008) Direct submission.