ISSba18

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009999 ND Shewanella baltica
Shewanella baltica OS233
Shewanella baltica OS195
Shewanella baltica OS185
DNA section
IS Length : 829 bp

Ends


IR Length : 14/16

IRL : GGTTTTGTCGCAAAGTTGACGATGTAAATCATAATGTTAATACTATTCCG
IRR : GGTTCTGTCGCAAACTGATATCTTGCGGCTATAATTTGAGGGCGCAAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
GATTAACATTCCGTTTGCCA0
CGCTTTATCTCCGTTTGCCA0

DNA sequence

GGTTTTGTCGCAAAGTTGACGATGTAAATCATAATGTTAATACTATTCCGATATTTCTCCGAGTCTCAATAGCATGACAATCAACTTTTCAGGACGACAT
TATCCACCAGATATCATCATGATGGCGTTGCGTTATTACCTGGCTTATAAACTCAGTTATCGTGAAATAGAAGAAATATTCGCTGAGCGTCATATTCATT
TTGACCACTCAACCTTGAACCGGTGGGTGATTAAATACGCACCGCAACTCGATGCTATATTCAGGAATAAAAAACGTCGAGTCTCTGGCTCCTGGCGAAT
GGATGAAACCTACATCAAAGTAAAAGGTCGCTGGGTTTACTATTATCGAGCTGTCGATAAGTATGGTACTATTATTGACTTTTATTTGAGTGAAACCCGC
GACGAGTCAGCTGCTCAGGCATTTTTCAACAAAGCCATCAACCAACATGGGTTGCCAGAAAAGGTTGTTATTGATAAAAGCAGTGCTAATGCTGCTGCAT
TAGATACGGTCAACCTTCGCCTTTGGTTATCTGGGAATATGCTGTTTATGATTGAAGTATTGGCAATCAAATATCTGAATAATATTGTCGAGCAAAGCCA
TCGAAAAGTGAAGGGAAAAATGCATCAATGTCTAGGATGGAAATCTTGGCTTGGTGCAGAGGCAACATTAGCGGGTATTGAAGTGTGCGACATGATTAAA
AAAGGTCAGATGATGAGCGCTGAAAATATGACACCATGGGAGCAGTTTTATGCTTTGGCGGCATAGTTGTATCTGAGAGGGCTTGCGCCCTCAAATTATA
GCCGCAAGATATCAGTTTGCGACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
693 bp230 aa74766+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTINFSGRHYPPDIIMMALRYYLAYKLSYREIEEIFAERHIHFDHSTLNRWVIKYAPQLDAIFRNKKRRVSGSWRMDETYIKVKGRWVYYYRAVDKYGTI
IDFYLSETRDESAAQAFFNKAINQHGLPEKVVIDKSSANAAALDTVNLRLWLSGNMLFMIEVLAIKYLNNIVEQSHRKVKGKMHQCLGWKSWLGAEATLA
GIEVCDMIKKGQMMSAENMTPWEQFYALAA

 

Blast result :
Comments
There is one copy of ISSba8 encoded by both S. baltica OS195 and S. baltica OS185. In each case the element is plasmid encoded. The transposase that it encodes has 89% ID to that encoded by ISSpu17.
References
1] Romine, M.F. (2008) Direct submission.